Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46911 * 2 1 4 4 H 1.08998 * 109.47759 * 305.00344 * 3 2 1 5 5 C 1.53007 * 109.47299 * 65.00307 * 3 2 1 6 6 C 1.50703 * 109.47487 * 184.99923 * 3 2 1 7 7 O 1.21286 * 119.99423 * 0.02562 * 6 3 2 8 8 N 1.34768 * 120.00430 * 179.97438 * 6 3 2 9 9 C 1.46500 * 120.00017 * 180.02562 * 8 6 3 10 10 H 1.08997 * 110.97276 * 322.30672 * 9 8 6 11 11 C 1.55017 * 111.10472 * 86.45728 * 9 8 6 12 12 O 1.43903 * 105.18344 * 81.91758 * 11 9 8 13 13 C 1.42402 * 109.55801 * 24.28930 * 12 11 9 14 14 C 1.52704 * 116.14002 * 129.84919 * 13 12 11 15 15 N 1.47210 * 87.86272 * 90.73415 * 14 13 12 16 16 C 1.36935 * 135.97302 * 206.39269 * 15 14 13 17 17 H 1.07997 * 120.00351 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00246 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99470 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00365 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46988 * 60.00300 * 20 18 16 22 22 H 1.48499 * 109.47164 * 179.97438 * 20 18 16 23 23 H 1.48489 * 109.47247 * 300.00345 * 20 18 16 24 24 C 1.47209 * 88.05579 * 26.42335 * 15 14 13 25 25 C 1.53659 * 108.53339 * 358.09243 * 13 12 11 26 26 H 1.08999 * 109.47183 * 59.99903 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47248 * 299.99780 * 1 2 3 29 29 H 1.08999 * 109.47248 * 240.00220 * 2 1 3 30 30 H 1.08999 * 109.47183 * 120.00097 * 2 1 3 31 31 H 1.08998 * 109.47711 * 179.97438 * 5 3 2 32 32 H 1.09001 * 109.46824 * 300.00293 * 5 3 2 33 33 H 1.08998 * 109.46685 * 59.99379 * 5 3 2 34 34 H 0.97001 * 119.99836 * 0.02562 * 8 6 3 35 35 H 1.09000 * 110.30114 * 322.99023 * 11 9 8 36 36 H 1.09001 * 110.37667 * 200.88656 * 11 9 8 37 37 H 1.09002 * 113.50144 * 335.96920 * 14 13 12 38 38 H 1.08997 * 113.49644 * 205.49348 * 14 13 12 39 39 H 0.97002 * 119.99761 * 180.02562 * 19 18 16 40 40 H 1.09001 * 113.49691 * 88.26969 * 24 15 14 41 41 H 1.08995 * 113.50212 * 218.74855 * 24 15 14 42 42 H 1.09002 * 110.93075 * 97.29470 * 25 13 12 43 43 H 1.09002 * 110.93025 * 220.95868 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4444 -0.1238 7 8 4.1450 0.3953 -0.2046 8 7 4.2148 2.6119 -0.1458 9 6 5.6748 2.6137 -0.2667 10 1 6.1140 1.7913 0.2978 11 6 6.1118 2.5667 -1.7533 12 8 6.0253 3.9270 -2.2148 13 6 6.1434 4.8145 -1.1074 14 6 7.1615 5.9430 -1.2553 15 7 6.0799 6.7713 -1.8132 16 6 5.9975 7.8365 -2.6697 17 1 6.8953 8.2524 -3.1023 18 6 4.7597 8.3820 -2.9819 19 7 3.6653 7.8748 -2.4550 20 14 4.6472 9.8356 -4.1496 21 1 5.2149 9.4562 -5.4684 22 1 3.2245 10.2265 -4.3178 23 1 5.4127 10.9791 -3.5917 24 6 5.1259 5.9533 -1.0465 25 6 6.2716 3.9796 0.1761 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9989 3.1541 1.3077 32 1 0.5489 2.1252 1.3970 33 1 2.0699 1.5874 2.1492 34 1 3.7324 3.4510 -0.0815 35 1 5.4376 1.9295 -2.3257 36 1 7.1362 2.2035 -1.8364 37 1 7.9536 5.7227 -1.9710 38 1 7.5437 6.3110 -0.3032 39 1 2.8004 8.2557 -2.6734 40 1 4.9496 6.3235 -0.0365 41 1 4.2024 5.7427 -1.5857 42 1 7.3163 3.8718 0.4679 43 1 5.6860 4.4165 0.9850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755060221.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = -31.223750 kcal Electronic energy + Delta-G solvation = -23137.522692 eV Core-core repulsion = 19798.501519 eV Total energy + Delta-G solvation = -3339.021173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45360 -39.29544 -36.39246 -35.42729 -34.21683 -32.12657 -30.88358 -29.45492 -28.12013 -25.70490 -25.42852 -24.77366 -22.72517 -21.81557 -20.83156 -19.79977 -19.02018 -17.15849 -16.86272 -16.47094 -15.59957 -15.31381 -15.05375 -14.62680 -14.58330 -14.06420 -13.76548 -13.63672 -13.30903 -13.13762 -12.96466 -12.65523 -12.28754 -12.08325 -11.82461 -11.75637 -11.50437 -11.40350 -11.35784 -11.09335 -10.92509 -10.81555 -10.80346 -10.50619 -10.27666 -9.82604 -9.65118 -9.49314 -9.08233 -8.82375 -8.54981 -6.87447 -5.75264 -3.06240 2.67793 3.19171 3.41599 3.45322 3.46441 4.17741 4.45918 4.53905 4.61951 4.71477 4.80700 5.03746 5.08416 5.18950 5.24861 5.26768 5.35065 5.37521 5.45339 5.49370 5.59526 5.70433 5.75449 5.81188 5.86688 5.89700 5.93481 5.96375 6.05234 6.12888 6.22851 6.37644 6.52101 6.55262 6.63442 6.90033 7.17337 7.50636 7.57602 7.80199 7.99912 8.26913 9.05246 9.72137 10.64498 11.42913 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019272 B = 0.004392 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.502923 B = 6373.179874 C = 7312.014470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.113 4.113 4 H 0.100 0.900 5 C -0.146 4.146 6 C 0.520 3.480 7 O -0.548 6.548 8 N -0.712 5.712 9 C 0.112 3.888 10 H 0.102 0.898 11 C 0.039 3.961 12 O -0.335 6.335 13 C 0.053 3.947 14 C 0.110 3.890 15 N -0.601 5.601 16 C -0.214 4.214 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.153 3.847 25 C -0.144 4.144 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.253 0.747 40 H 0.034 0.966 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 -13.356 8.811 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.135 4.135 4 H 0.118 0.882 5 C -0.203 4.203 6 C 0.306 3.694 7 O -0.426 6.426 8 N -0.364 5.364 9 C 0.006 3.994 10 H 0.120 0.880 11 C -0.039 4.039 12 O -0.253 6.253 13 C 0.012 3.988 14 C -0.016 4.016 15 N -0.327 5.327 16 C -0.342 4.342 17 H 0.098 0.902 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.027 3.973 25 C -0.183 4.183 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.375 -13.748 8.323 16.246 hybrid contribution -0.231 1.277 -0.391 1.356 sum -2.606 -12.471 7.932 15.007 Atomic orbital electron populations 1.21851 0.95559 1.01726 1.02023 1.21321 0.95278 0.94235 1.03302 1.21376 0.91809 0.99374 1.00914 0.88186 1.21832 1.02395 1.00503 0.95603 1.20698 0.90027 0.83416 0.75214 1.90669 1.70397 1.31490 1.50009 1.45953 1.07087 1.09197 1.74139 1.22547 0.80859 0.98938 0.97041 0.88045 1.23831 1.00503 0.85653 0.93881 1.88459 1.93537 1.13585 1.29752 1.23464 1.01260 0.90126 0.83957 1.22705 0.93216 0.88977 0.96737 1.45340 1.01816 1.35996 1.49508 1.18869 0.93116 1.04766 1.17406 0.90169 1.24755 0.95211 0.99820 1.00585 1.69802 0.97082 1.42955 1.47079 0.86176 0.76658 0.82069 0.80731 1.21055 1.21540 1.21204 1.22383 0.95291 0.84986 0.94657 1.23214 1.02149 0.93829 0.99061 0.92579 0.92620 0.92423 0.91204 0.91484 0.91820 0.91162 0.92219 0.75743 0.89996 0.91739 0.93610 0.93964 0.93683 0.94838 0.90522 0.89157 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 37.16 0.36 -0.89 16 2 C -0.10 -1.05 4.75 -26.73 -0.13 -1.17 16 3 C -0.11 -1.20 2.72 -91.77 -0.25 -1.45 16 4 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 5 C -0.15 -1.28 8.85 37.16 0.33 -0.95 16 6 C 0.52 7.01 7.15 -10.99 -0.08 6.93 16 7 O -0.55 -8.99 15.67 5.55 0.09 -8.91 16 8 N -0.71 -9.40 5.13 -51.50 -0.26 -9.66 16 9 C 0.11 1.51 3.37 -65.54 -0.22 1.29 16 10 H 0.10 1.30 7.74 -51.93 -0.40 0.90 16 11 C 0.04 0.62 7.49 38.22 0.29 0.90 16 12 O -0.33 -6.77 11.17 -35.23 -0.39 -7.16 16 13 C 0.05 1.00 1.75 -90.52 -0.16 0.84 16 14 C 0.11 2.30 8.20 -8.07 -0.07 2.23 16 15 N -0.60 -15.76 3.79 -184.48 -0.70 -16.46 16 16 C -0.21 -6.16 10.74 -15.06 -0.16 -6.32 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.36 11.51 55.49 0.64 -26.72 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 C 0.15 3.51 6.88 -8.00 -0.05 3.46 16 25 C -0.14 -1.95 5.97 -25.06 -0.15 -2.10 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 29 H 0.07 0.79 7.95 -51.93 -0.41 0.38 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.55 7.56 -51.93 -0.39 0.16 16 32 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.41 5.20 8.04 -40.82 -0.33 4.87 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 39 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.03 0.75 7.95 -51.93 -0.41 0.33 16 41 H 0.08 1.99 7.15 -51.93 -0.37 1.61 16 42 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 43 H 0.09 1.11 7.82 -51.93 -0.41 0.71 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -33.62 346.06 -8.01 -41.63 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.18 Total: 2.24 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -0.39 Total: 2.46 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.32 Total: -52.84 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.31 Total: -16.07 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.62 -8.01 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755060221.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.407 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds