Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47121 * 2 1 4 4 H 1.08998 * 109.47136 * 305.00008 * 3 2 1 5 5 C 1.53002 * 109.47058 * 65.00140 * 3 2 1 6 6 C 1.50700 * 109.47148 * 185.00128 * 3 2 1 7 7 O 1.21281 * 119.99775 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00076 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99984 * 180.02562 * 8 6 3 10 10 H 1.09003 * 110.97215 * 37.68338 * 9 8 6 11 11 C 1.55018 * 111.10027 * 273.54147 * 9 8 6 12 12 O 1.43907 * 105.17882 * 205.98613 * 11 9 8 13 13 C 1.42400 * 109.55645 * 24.29419 * 12 11 9 14 14 C 1.52704 * 116.14129 * 129.84207 * 13 12 11 15 15 N 1.47222 * 87.79376 * 90.70293 * 14 13 12 16 16 C 1.36937 * 135.97133 * 206.45900 * 15 14 13 17 17 H 1.07993 * 120.00169 * 6.77626 * 16 15 14 18 18 C 1.38809 * 119.99539 * 186.77829 * 16 15 14 19 19 N 1.31618 * 119.99814 * 172.31801 * 18 16 15 20 20 Si 1.86796 * 120.00369 * 352.32350 * 18 16 15 21 21 H 1.48501 * 109.47329 * 55.35125 * 20 18 16 22 22 H 1.48502 * 109.47501 * 175.35771 * 20 18 16 23 23 H 1.48508 * 109.46893 * 295.35345 * 20 18 16 24 24 C 1.47213 * 88.05059 * 26.71219 * 15 14 13 25 25 C 1.53656 * 108.53101 * 358.08647 * 13 12 11 26 26 H 1.08998 * 109.47269 * 300.00220 * 1 2 3 27 27 H 1.09009 * 109.47133 * 59.99510 * 1 2 3 28 28 H 1.08999 * 109.47465 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46693 * 240.00093 * 2 1 3 30 30 H 1.08993 * 109.46835 * 120.00324 * 2 1 3 31 31 H 1.08998 * 109.46880 * 59.99260 * 5 3 2 32 32 H 1.08994 * 109.47207 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.46499 * 299.99953 * 5 3 2 34 34 H 0.96996 * 119.99915 * 359.97438 * 8 6 3 35 35 H 1.09000 * 110.30196 * 87.06222 * 11 9 8 36 36 H 1.08994 * 110.30312 * 324.91572 * 11 9 8 37 37 H 1.09008 * 113.49708 * 335.97580 * 14 13 12 38 38 H 1.08994 * 113.50350 * 205.43488 * 14 13 12 39 39 H 0.97000 * 120.00337 * 4.90552 * 19 18 16 40 40 H 1.08998 * 113.49804 * 88.01829 * 24 15 14 41 41 H 1.08992 * 113.49745 * 218.55298 * 24 15 14 42 42 H 1.09001 * 110.93074 * 97.30240 * 25 13 12 43 43 H 1.08999 * 110.92636 * 220.95645 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5419 1.4443 -0.1239 7 8 4.1449 0.3952 -0.2047 8 7 4.2149 2.6118 -0.1448 9 6 5.6750 2.6136 -0.2658 10 1 6.0114 1.8274 -0.9417 11 6 6.3502 2.4820 1.1234 12 8 7.6420 3.0985 0.9743 13 6 7.6011 4.0383 -0.0947 14 6 8.1445 5.4318 0.2133 15 7 9.4613 4.9570 -0.2427 16 6 10.7671 5.2836 0.0092 17 1 11.0052 5.9995 0.7819 18 6 11.7845 4.6945 -0.7287 19 7 13.0241 5.1160 -0.5939 20 14 11.3946 3.3038 -1.9132 21 1 10.3530 3.7488 -2.8736 22 1 12.6240 2.9266 -2.6559 23 1 10.8967 2.1300 -1.1517 24 6 8.7592 3.9817 -1.0930 25 6 6.1983 4.0051 -0.7208 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8901 30 1 1.8932 -0.5139 0.8899 31 1 2.0698 1.5874 2.1491 32 1 1.9982 3.1543 1.3072 33 1 0.5489 2.1252 1.3969 34 1 3.7326 3.4509 -0.0805 35 1 6.4613 1.4315 1.3919 36 1 5.7657 3.0066 1.8792 37 1 8.1168 5.6845 1.2734 38 1 7.7214 6.2128 -0.4184 39 1 13.2381 5.7884 0.0716 40 1 8.5026 4.3698 -2.0787 41 1 9.2506 3.0098 -1.1364 42 1 5.5747 4.8052 -0.3219 43 1 6.2556 4.0633 -1.8077 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755060222.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -24.810748 kcal Electronic energy + Delta-G solvation = -22758.182482 eV Core-core repulsion = 19419.439397 eV Total energy + Delta-G solvation = -3338.743084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64385 -39.68352 -36.75063 -35.70872 -34.68895 -32.32686 -31.09974 -29.74146 -28.32372 -25.76361 -25.59895 -25.46325 -22.89041 -21.38443 -21.18660 -20.07170 -19.31486 -17.62282 -17.33123 -16.73423 -16.02881 -15.75952 -15.39519 -14.92885 -14.55945 -14.19812 -13.89832 -13.84608 -13.68476 -13.47777 -13.12895 -13.00750 -12.62718 -12.50706 -12.17999 -12.06042 -11.92331 -11.72447 -11.59939 -11.19519 -11.04114 -10.92309 -10.83406 -10.46847 -10.28665 -9.93416 -9.67443 -9.23120 -9.15872 -8.80536 -8.75336 -7.10252 -6.26454 -3.16238 2.40936 2.84189 3.44866 3.52636 3.70298 3.96795 4.24482 4.34454 4.48133 4.53743 4.65194 4.74314 4.81838 4.87245 4.91983 4.99160 5.08702 5.10924 5.15898 5.18601 5.41356 5.48794 5.54078 5.58346 5.65598 5.70776 5.72768 5.84455 5.85527 5.89799 6.00287 6.14802 6.17443 6.22261 6.33236 6.41089 6.47250 7.14419 7.24395 7.46862 7.99697 8.28760 9.03123 9.55614 10.40676 11.26595 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040337 B = 0.003480 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.980418 B = 8044.226217 C = 8375.475229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.097 0.903 5 C -0.146 4.146 6 C 0.515 3.485 7 O -0.535 6.535 8 N -0.718 5.718 9 C 0.111 3.889 10 H 0.106 0.894 11 C 0.040 3.960 12 O -0.333 6.333 13 C 0.070 3.930 14 C 0.118 3.882 15 N -0.621 5.621 16 C -0.300 4.300 17 H 0.083 0.917 18 C -0.026 4.026 19 N -0.936 5.936 20 Si 1.070 2.930 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.094 3.906 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.401 0.599 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.260 0.740 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.325 -5.302 0.694 28.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.132 4.132 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.302 3.698 7 O -0.411 6.411 8 N -0.371 5.371 9 C 0.005 3.995 10 H 0.124 0.876 11 C -0.038 4.038 12 O -0.251 6.251 13 C 0.028 3.972 14 C -0.009 4.009 15 N -0.349 5.349 16 C -0.426 4.426 17 H 0.100 0.900 18 C -0.224 4.224 19 N -0.578 5.578 20 Si 0.903 3.097 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.219 1.219 24 C -0.031 4.031 25 C -0.182 4.182 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -26.725 -7.037 -0.306 27.637 hybrid contribution -1.052 1.607 1.114 2.221 sum -27.777 -5.430 0.808 28.314 Atomic orbital electron populations 1.21847 0.95462 1.01964 1.01832 1.21350 0.95335 0.94105 1.03646 1.21366 0.91610 0.99599 1.00620 0.88469 1.21842 1.02432 1.00225 0.95897 1.20775 0.90034 0.83554 0.75467 1.90728 1.70325 1.31329 1.48686 1.45920 1.06965 1.08944 1.75274 1.22746 0.79627 0.99103 0.97996 0.87593 1.23803 0.85075 0.98884 0.96010 1.88486 1.29428 1.55510 1.51655 1.23188 0.92466 0.92401 0.89148 1.22627 0.86536 0.92720 0.99000 1.45817 1.00526 1.39300 1.49210 1.20108 0.78870 1.24620 1.19004 0.89955 1.25720 0.92737 1.02553 1.01397 1.70926 1.18439 1.33180 1.35289 0.83704 0.74115 0.75925 0.75968 1.21495 1.22253 1.21885 1.23123 0.90793 0.95295 0.93938 1.23154 0.96650 0.95781 1.02643 0.92429 0.92721 0.92431 0.91065 0.91237 0.91915 0.92129 0.91100 0.76369 0.89413 0.92194 0.93047 0.93341 0.93006 0.92576 0.92344 0.89730 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.11 -0.81 4.75 -26.73 -0.13 -0.94 16 3 C -0.11 -0.77 2.72 -91.77 -0.25 -1.02 16 4 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 5 C -0.15 -0.78 8.84 37.16 0.33 -0.46 16 6 C 0.52 5.42 7.15 -10.99 -0.08 5.34 16 7 O -0.53 -7.96 15.67 5.56 0.09 -7.87 16 8 N -0.72 -6.62 5.13 -51.50 -0.26 -6.88 16 9 C 0.11 1.37 3.37 -65.55 -0.22 1.14 16 10 H 0.11 1.49 7.74 -51.93 -0.40 1.09 16 11 C 0.04 0.58 7.49 38.22 0.29 0.87 16 12 O -0.33 -6.46 11.18 -35.23 -0.39 -6.85 16 13 C 0.07 1.25 1.75 -90.44 -0.16 1.09 16 14 C 0.12 2.37 8.20 -8.06 -0.07 2.30 16 15 N -0.62 -16.00 3.70 -184.56 -0.68 -16.68 16 16 C -0.30 -9.03 11.08 -15.06 -0.17 -9.20 16 17 H 0.08 2.59 8.05 -52.49 -0.42 2.17 16 18 C -0.03 -0.80 5.50 -17.43 -0.10 -0.89 16 19 N -0.94 -30.46 13.70 55.49 0.76 -29.70 16 20 Si 1.07 27.99 25.13 -169.99 -4.27 23.72 16 21 H -0.29 -6.87 6.11 56.52 0.35 -6.52 16 22 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 23 H -0.29 -7.42 6.64 56.52 0.38 -7.04 16 24 C 0.09 2.07 5.19 -7.91 -0.04 2.02 16 25 C -0.14 -1.76 6.03 -25.08 -0.15 -1.91 16 26 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 27 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.64 7.96 -51.93 -0.41 0.23 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.26 7.56 -51.93 -0.39 -0.13 16 33 H 0.07 0.29 6.56 -51.93 -0.34 -0.05 16 34 H 0.40 2.48 7.93 -40.82 -0.32 2.16 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 38 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 39 H 0.26 8.34 8.73 -40.82 -0.36 7.98 16 40 H 0.06 1.14 7.50 -51.93 -0.39 0.75 16 41 H 0.06 1.38 4.70 -51.93 -0.24 1.13 16 42 H 0.08 0.82 7.97 -51.93 -0.41 0.41 16 43 H 0.09 1.04 7.81 -51.93 -0.41 0.64 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -36.49 338.45 -7.17 -43.66 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.13 Total: -2.38 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.38 Total: -2.11 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.19 Total: -53.26 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.31 Total: -14.73 kcal Atomic # 14 Polarization: 27.99 SS G_CDS: -4.27 Total: 23.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.49 -7.17 -43.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755060222.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.854 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds