Wall clock time and date at job start Tue Mar 31 2020 06:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.47025 * 2 1 4 4 H 1.08997 * 109.46921 * 55.00526 * 3 2 1 5 5 C 1.52994 * 109.46892 * 295.00178 * 3 2 1 6 6 C 1.50699 * 109.46814 * 175.00062 * 3 2 1 7 7 O 1.21290 * 120.00233 * 0.02562 * 6 3 2 8 8 N 1.34769 * 119.99947 * 180.02562 * 6 3 2 9 9 C 1.46500 * 120.00187 * 179.97438 * 8 6 3 10 10 H 1.08995 * 111.00745 * 322.28689 * 9 8 6 11 11 C 1.55021 * 111.10622 * 86.45481 * 9 8 6 12 12 O 1.43913 * 105.18059 * 81.91384 * 11 9 8 13 13 C 1.42399 * 109.55582 * 24.30066 * 12 11 9 14 14 C 1.52704 * 116.14227 * 129.84146 * 13 12 11 15 15 N 1.47209 * 87.79370 * 90.69712 * 14 13 12 16 16 C 1.36932 * 135.97517 * 206.45240 * 15 14 13 17 17 H 1.07998 * 120.00016 * 7.52898 * 16 15 14 18 18 C 1.38816 * 120.00198 * 187.53215 * 16 15 14 19 19 N 1.31624 * 119.99715 * 174.12560 * 18 16 15 20 20 Si 1.86799 * 119.99955 * 353.85209 * 18 16 15 21 21 H 1.48502 * 109.46788 * 175.44014 * 20 18 16 22 22 H 1.48501 * 109.46809 * 295.43926 * 20 18 16 23 23 H 1.48506 * 109.47175 * 55.43980 * 20 18 16 24 24 C 1.47216 * 88.05335 * 26.71482 * 15 14 13 25 25 C 1.53656 * 108.53458 * 358.07784 * 13 12 11 26 26 H 1.08995 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46402 * 299.99757 * 1 2 3 28 28 H 1.08993 * 109.46943 * 59.99805 * 1 2 3 29 29 H 1.09004 * 109.46402 * 240.00243 * 2 1 3 30 30 H 1.09002 * 109.46993 * 120.00396 * 2 1 3 31 31 H 1.09007 * 109.46563 * 180.02562 * 5 3 2 32 32 H 1.08997 * 109.47622 * 299.99919 * 5 3 2 33 33 H 1.08996 * 109.47424 * 60.00062 * 5 3 2 34 34 H 0.97006 * 120.00232 * 0.02562 * 8 6 3 35 35 H 1.09001 * 110.29733 * 322.99382 * 11 9 8 36 36 H 1.08995 * 110.30211 * 200.84719 * 11 9 8 37 37 H 1.08999 * 113.49854 * 335.97102 * 14 13 12 38 38 H 1.08996 * 113.55281 * 205.43970 * 14 13 12 39 39 H 0.96994 * 120.00373 * 354.64904 * 19 18 16 40 40 H 1.09000 * 113.50045 * 88.01578 * 24 15 14 41 41 H 1.09010 * 113.49412 * 218.55610 * 24 15 14 42 42 H 1.09004 * 110.92610 * 97.29729 * 25 13 12 43 43 H 1.08997 * 110.93411 * 220.96396 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5420 1.4443 0.1238 7 8 4.1452 0.3951 0.2037 8 7 4.2149 2.6117 0.1458 9 6 5.6749 2.6135 0.2667 10 1 6.0120 1.8273 0.9422 11 6 6.3503 2.4832 -1.1225 12 8 6.3473 3.8144 -1.6694 13 6 6.2861 4.7645 -0.6105 14 6 7.3201 5.8874 -0.6535 15 7 6.3482 6.6756 -1.4289 16 6 6.4118 7.6881 -2.3486 17 1 7.3675 7.9999 -2.7433 18 6 5.2478 8.3139 -2.7736 19 7 5.3161 9.3614 -3.5677 20 14 3.5845 7.6647 -2.2247 21 1 2.5134 8.5659 -2.7204 22 1 3.3788 6.3013 -2.7761 23 1 3.5391 7.6109 -0.7413 24 6 5.2777 5.9030 -0.7776 25 6 6.1973 4.0053 0.7224 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 1.9990 3.1541 -1.3074 32 1 2.0698 1.5876 -2.1492 33 1 0.5490 2.1252 -1.3969 34 1 3.7325 3.4510 0.0823 35 1 5.7763 1.8110 -1.7604 36 1 7.3726 2.1213 -1.0136 37 1 8.2179 5.6301 -1.2154 38 1 7.5423 6.3125 0.3252 39 1 6.1786 9.7434 -3.7935 40 1 4.9458 6.3318 0.1680 41 1 4.4505 5.6589 -1.4443 42 1 7.1793 3.9194 1.1877 43 1 5.4888 4.4853 1.3975 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755060224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:13 Heat of formation + Delta-G solvation = -26.199276 kcal Electronic energy + Delta-G solvation = -23377.923157 eV Core-core repulsion = 20039.119861 eV Total energy + Delta-G solvation = -3338.803296 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69203 -39.53654 -36.73084 -35.55752 -34.41976 -32.36093 -31.08397 -29.61536 -28.41420 -25.73809 -25.58112 -25.40076 -22.81434 -21.41709 -20.97069 -19.92157 -19.33905 -17.51892 -17.33153 -16.85108 -15.87012 -15.61559 -15.33425 -15.02554 -14.46467 -14.26219 -13.78990 -13.75604 -13.67459 -13.31631 -13.00498 -12.89721 -12.72128 -12.33202 -12.03124 -11.90304 -11.80271 -11.62560 -11.58283 -11.15429 -11.01743 -10.89863 -10.81845 -10.47422 -10.35702 -9.83710 -9.71388 -9.20671 -9.13820 -8.90716 -8.72472 -7.16537 -6.27741 -3.20623 2.52154 3.02280 3.34972 3.42435 3.62699 3.92176 4.31596 4.49192 4.58866 4.60294 4.70721 4.74625 4.82762 4.87148 5.02650 5.09527 5.16063 5.26192 5.31911 5.38942 5.47372 5.60796 5.66936 5.70137 5.70609 5.73334 5.78602 5.84243 5.85940 6.06296 6.10374 6.13669 6.16478 6.23217 6.35720 6.42004 6.44043 7.11264 7.37384 7.49023 8.10612 8.25520 8.99347 9.51262 10.36843 11.22575 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.005265 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.064409 B = 5316.532861 C = 6424.810102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.112 4.112 4 H 0.097 0.903 5 C -0.150 4.150 6 C 0.519 3.481 7 O -0.544 6.544 8 N -0.716 5.716 9 C 0.110 3.890 10 H 0.105 0.895 11 C 0.039 3.961 12 O -0.335 6.335 13 C 0.067 3.933 14 C 0.116 3.884 15 N -0.619 5.619 16 C -0.299 4.299 17 H 0.083 0.917 18 C -0.026 4.026 19 N -0.936 5.936 20 Si 1.069 2.931 21 H -0.295 1.295 22 H -0.291 1.291 23 H -0.288 1.288 24 C 0.090 3.910 25 C -0.145 4.145 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.404 0.596 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.261 0.739 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 -17.217 11.293 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.207 4.207 6 C 0.306 3.694 7 O -0.421 6.421 8 N -0.368 5.368 9 C 0.005 3.995 10 H 0.123 0.877 11 C -0.039 4.039 12 O -0.253 6.253 13 C 0.025 3.975 14 C -0.011 4.011 15 N -0.347 5.347 16 C -0.425 4.425 17 H 0.101 0.899 18 C -0.224 4.224 19 N -0.579 5.579 20 Si 0.902 3.098 21 H -0.222 1.222 22 H -0.219 1.219 23 H -0.216 1.216 24 C -0.035 4.035 25 C -0.184 4.184 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.239 0.761 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.494 -17.484 10.738 21.844 hybrid contribution 1.580 0.291 0.359 1.646 sum -5.914 -17.193 11.097 21.301 Atomic orbital electron populations 1.21850 0.95484 1.01827 1.01992 1.21334 0.95344 0.94119 1.03396 1.21374 0.91601 0.99494 1.00827 0.88465 1.21867 1.02484 1.00685 0.95674 1.20736 0.90093 0.83374 0.75165 1.90682 1.70459 1.31354 1.49595 1.45972 1.07018 1.09176 1.74602 1.22577 0.80483 0.98734 0.97691 0.87663 1.23887 0.99927 0.86001 0.94099 1.88460 1.94313 1.13363 1.29185 1.23247 0.99858 0.89383 0.84971 1.22651 0.94409 0.88690 0.95372 1.45800 1.01316 1.42410 1.45172 1.20150 0.96348 1.09093 1.16895 0.89922 1.25696 1.01770 0.96251 0.98706 1.70905 1.27329 1.21853 1.37767 0.83742 0.76157 0.74576 0.75341 1.22224 1.21929 1.21565 1.23148 0.94193 0.89262 0.96937 1.23249 1.03000 0.93945 0.98243 0.92536 0.92721 0.92290 0.91310 0.91243 0.91802 0.91873 0.90999 0.76069 0.89690 0.91330 0.93012 0.93369 0.92947 0.92811 0.92401 0.88590 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.10 -0.95 4.75 -26.72 -0.13 -1.08 16 3 C -0.11 -1.05 2.72 -91.77 -0.25 -1.30 16 4 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.39 8.84 37.15 0.33 -1.06 16 6 C 0.52 6.35 7.15 -10.99 -0.08 6.27 16 7 O -0.54 -8.28 15.67 5.55 0.09 -8.20 16 8 N -0.72 -8.44 5.13 -51.50 -0.26 -8.70 16 9 C 0.11 1.34 3.37 -65.54 -0.22 1.12 16 10 H 0.11 1.21 7.74 -51.93 -0.40 0.80 16 11 C 0.04 0.55 7.49 38.23 0.29 0.84 16 12 O -0.33 -6.26 11.18 -35.23 -0.39 -6.66 16 13 C 0.07 1.15 1.75 -90.44 -0.16 0.99 16 14 C 0.12 2.29 8.20 -8.07 -0.07 2.22 16 15 N -0.62 -15.53 3.70 -184.59 -0.68 -16.21 16 16 C -0.30 -8.83 11.08 -15.06 -0.17 -9.00 16 17 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 18 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 19 N -0.94 -29.98 13.70 55.49 0.76 -29.22 16 20 Si 1.07 26.74 25.16 -169.99 -4.28 22.46 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.29 -6.95 6.51 56.52 0.37 -6.59 16 23 H -0.29 -6.51 6.19 56.52 0.35 -6.16 16 24 C 0.09 1.87 5.18 -7.91 -0.04 1.82 16 25 C -0.15 -1.76 5.97 -25.07 -0.15 -1.91 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.69 7.96 -51.93 -0.41 0.27 16 31 H 0.06 0.62 7.57 -51.93 -0.39 0.23 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.55 6.56 -51.93 -0.34 0.21 16 34 H 0.40 4.45 8.04 -40.82 -0.33 4.12 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 40 H 0.05 1.03 7.44 -51.93 -0.39 0.64 16 41 H 0.06 1.26 4.75 -51.92 -0.25 1.02 16 42 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 43 H 0.09 0.97 7.81 -51.93 -0.41 0.57 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -35.22 338.65 -7.19 -42.41 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.14 Total: 1.69 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.38 Total: -2.68 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.19 Total: -54.13 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.31 Total: -14.85 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.28 Total: 22.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.22 -7.19 -42.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755060224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.209 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds