Wall clock time and date at job start Tue Mar 31 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46890 * 2 1 4 4 H 1.09001 * 109.46676 * 55.00081 * 3 2 1 5 5 O 1.42901 * 109.46942 * 294.99873 * 3 2 1 6 6 C 1.42901 * 113.99451 * 149.99893 * 5 3 2 7 7 C 1.50696 * 109.46900 * 174.99996 * 3 2 1 8 8 O 1.21281 * 119.99949 * 114.99944 * 7 3 2 9 9 N 1.34770 * 120.00294 * 294.99992 * 7 3 2 10 10 C 1.46496 * 120.00409 * 180.02562 * 9 7 3 11 11 C 1.50704 * 109.47393 * 179.97438 * 10 9 7 12 12 C 1.29456 * 117.69087 * 95.00285 * 11 10 9 13 13 C 1.50320 * 123.64757 * 180.85992 * 12 11 10 14 14 N 1.47010 * 109.16677 * 349.02099 * 13 12 11 15 15 C 1.36936 * 121.37518 * 222.97102 * 14 13 12 16 16 H 1.08000 * 120.00458 * 155.97250 * 15 14 13 17 17 C 1.38820 * 119.99781 * 335.97905 * 15 14 13 18 18 N 1.31619 * 119.99954 * 344.49146 * 17 15 14 19 19 Si 1.86801 * 119.99761 * 164.49817 * 17 15 14 20 20 H 1.48504 * 109.47158 * 94.45231 * 19 17 15 21 21 H 1.48506 * 109.46846 * 214.44960 * 19 17 15 22 22 H 1.48499 * 109.47222 * 334.44736 * 19 17 15 23 23 C 1.47337 * 117.25195 * 42.94547 * 14 13 12 24 24 C 1.49964 * 117.69150 * 274.74001 * 11 10 9 25 25 H 1.08999 * 109.47165 * 299.99766 * 1 2 3 26 26 H 1.09004 * 109.46813 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47359 * 59.99985 * 1 2 3 28 28 H 1.08998 * 109.47359 * 120.00015 * 2 1 3 29 29 H 1.08999 * 109.47165 * 240.00234 * 2 1 3 30 30 H 1.09013 * 109.46893 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.47721 * 299.99571 * 6 5 3 32 32 H 1.08996 * 109.47311 * 60.00651 * 6 5 3 33 33 H 0.97006 * 119.99862 * 0.02562 * 9 7 3 34 34 H 1.09005 * 109.47202 * 300.00425 * 10 9 7 35 35 H 1.09003 * 109.47102 * 60.00083 * 10 9 7 36 36 H 1.07995 * 118.17301 * 0.87713 * 12 11 10 37 37 H 1.09002 * 109.52143 * 108.92598 * 13 12 11 38 38 H 1.09002 * 109.52553 * 229.11490 * 13 12 11 39 39 H 0.97003 * 119.99990 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.77196 * 57.81103 * 23 14 13 41 41 H 1.08993 * 109.77897 * 178.61912 * 23 14 13 42 42 H 1.08999 * 109.31490 * 281.28679 * 24 11 10 43 43 H 1.08995 * 109.31918 * 40.72163 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 1.4558 3.4903 -1.1002 7 6 3.5419 1.4444 0.1238 8 8 4.2250 1.8611 -0.7875 9 7 4.1260 0.9829 1.2473 10 6 5.5860 0.9851 1.3679 11 6 5.9801 0.4234 2.7096 12 6 6.2727 -0.8361 2.7721 13 6 6.6641 -1.5383 4.0423 14 7 6.9099 -0.5377 5.0909 15 6 7.9816 -0.6404 5.9372 16 1 8.3754 0.2420 6.4195 17 6 8.5619 -1.8788 6.1750 18 7 7.9201 -2.9802 5.8473 19 14 10.2537 -1.9821 6.9604 20 1 10.1083 -2.1511 8.4286 21 1 10.9900 -3.1431 6.3989 22 1 11.0076 -0.7343 6.6779 23 6 5.9560 0.5805 5.1933 24 6 6.0115 1.3642 3.8771 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.1713 3.9003 -2.0694 31 1 0.6617 3.6808 -0.3784 32 1 2.3767 3.9645 -0.7610 33 1 3.5797 0.6492 1.9761 34 1 6.0170 0.3723 0.5761 35 1 5.9563 2.0065 1.2791 36 1 6.2337 -1.4144 1.8609 37 1 5.8583 -2.2026 4.3544 38 1 7.5710 -2.1188 3.8730 39 1 8.3255 -3.8456 6.0138 40 1 4.9499 0.1933 5.3543 41 1 6.2383 1.2314 6.0207 42 1 6.9287 1.9521 3.8417 43 1 5.1542 2.0351 3.8227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755883036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:29 Heat of formation + Delta-G solvation = -52.164754 kcal Electronic energy + Delta-G solvation = -22420.164405 eV Core-core repulsion = 19080.235161 eV Total energy + Delta-G solvation = -3339.929243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.15278 -38.13241 -37.32870 -34.97482 -33.91355 -32.76512 -30.92449 -29.78208 -28.38269 -27.00870 -25.89325 -24.02363 -22.78550 -22.28274 -21.13801 -20.45376 -17.97944 -17.54570 -17.21911 -15.92431 -15.77888 -15.37611 -15.15854 -14.76785 -14.63291 -14.22260 -13.95018 -13.70584 -13.63112 -13.41107 -13.05331 -12.66517 -12.32324 -12.21997 -12.08180 -11.78752 -11.60176 -11.44800 -11.35072 -11.04577 -10.94747 -10.75882 -10.71083 -10.42960 -10.34602 -9.86879 -9.67066 -9.38594 -8.99347 -8.71488 -8.09308 -6.78838 -5.83796 -3.22527 2.52024 2.57791 3.29720 3.35483 3.42877 3.45281 3.65628 4.46250 4.53874 4.61472 4.71571 4.98313 5.05419 5.10889 5.20656 5.25768 5.31811 5.36395 5.46368 5.49097 5.54472 5.68432 5.78620 5.80122 5.91201 5.99865 6.02800 6.12172 6.27989 6.41295 6.49432 6.68523 6.77807 6.82114 7.12279 7.21272 7.28303 7.55224 7.69062 7.78324 8.21926 8.33922 9.15422 9.78165 10.35896 11.26712 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034396 B = 0.003192 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.841692 B = 8770.623310 C = 9049.420669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.086 0.914 5 O -0.357 6.357 6 C 0.029 3.971 7 C 0.485 3.515 8 O -0.532 6.532 9 N -0.718 5.718 10 C 0.157 3.843 11 C -0.167 4.167 12 C -0.123 4.123 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.247 4.247 16 H 0.069 0.931 17 C -0.001 4.001 18 N -0.909 5.909 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.144 3.856 24 C -0.090 4.090 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.401 0.599 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.329 8.031 -9.577 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.103 0.897 5 O -0.274 6.274 6 C -0.067 4.067 7 C 0.270 3.730 8 O -0.408 6.408 9 N -0.372 5.372 10 C 0.034 3.966 11 C -0.168 4.168 12 C -0.144 4.144 13 C 0.069 3.931 14 N -0.319 5.319 15 C -0.376 4.376 16 H 0.086 0.914 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.017 3.983 24 C -0.129 4.129 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.235 0.765 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.772 8.082 -10.395 19.053 hybrid contribution 0.759 -0.103 0.906 1.187 sum -13.012 7.979 -9.489 17.973 Atomic orbital electron populations 1.21724 0.94407 1.02182 1.02302 1.21603 0.97301 0.92800 1.03840 1.22139 0.90936 0.96497 0.89169 0.89663 1.87977 1.88082 1.20829 1.30511 1.22850 0.99762 0.81470 1.02630 1.21404 0.91176 0.77967 0.82470 1.90701 1.65117 1.46135 1.38895 1.46260 1.08330 1.64323 1.18254 1.20459 0.79169 1.01085 0.95844 1.20496 1.06345 0.95734 0.94217 1.23294 0.95150 0.95388 1.00576 1.19764 1.00567 0.90081 0.82696 1.44129 1.27434 1.25433 1.34862 1.19180 1.04929 0.92506 1.21009 0.91368 1.24989 0.99414 0.95451 1.00029 1.70005 1.36635 0.96829 1.51991 0.86244 0.84207 0.77281 0.78849 1.21477 1.21541 1.20459 1.20988 0.92870 0.90410 0.93992 1.20787 1.00354 0.96732 0.95021 0.92690 0.92122 0.91856 0.89854 0.90352 0.89319 0.93993 0.93684 0.76475 0.91662 0.91699 0.88758 0.94071 0.88864 0.93589 0.95868 0.92462 0.91724 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.81 37.16 0.36 -0.74 16 2 C -0.12 -1.05 5.61 -26.73 -0.15 -1.20 16 3 C 0.07 0.78 2.51 -27.88 -0.07 0.71 16 4 H 0.09 0.70 7.79 -51.93 -0.40 0.30 16 5 O -0.36 -4.27 9.42 -55.09 -0.52 -4.79 16 6 C 0.03 0.27 10.81 101.05 1.09 1.36 16 7 C 0.48 6.66 7.13 -10.99 -0.08 6.59 16 8 O -0.53 -9.58 16.51 -14.30 -0.24 -9.81 16 9 N -0.72 -9.13 5.45 -61.47 -0.33 -9.46 16 10 C 0.16 2.34 5.66 -5.19 -0.03 2.31 16 11 C -0.17 -2.79 5.22 -100.99 -0.53 -3.32 16 12 C -0.12 -2.28 9.47 -35.78 -0.34 -2.62 16 13 C 0.19 4.47 5.23 -5.10 -0.03 4.44 16 14 N -0.60 -14.54 3.01 -173.56 -0.52 -15.06 16 15 C -0.25 -6.66 9.71 -15.06 -0.15 -6.80 16 16 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 17 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 18 N -0.91 -25.76 11.08 55.49 0.61 -25.15 16 19 Si 0.90 21.45 29.58 -169.99 -5.03 16.42 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.14 2.87 6.59 -3.43 -0.02 2.85 16 24 C -0.09 -1.51 5.95 -28.09 -0.17 -1.68 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 7.82 -51.93 -0.41 0.10 16 28 H 0.08 0.66 7.77 -51.93 -0.40 0.26 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.40 4.30 8.17 -40.82 -0.33 3.96 16 34 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 35 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 36 H 0.09 1.58 7.73 -52.49 -0.41 1.17 16 37 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 39 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -31.73 352.17 -8.20 -39.93 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.30 Total: 0.83 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -0.19 Total: 1.78 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.24 Total: -49.67 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.76 Total: -14.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.73 -8.20 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755883036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.235 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds