Wall clock time and date at job start Tue Mar 31 2020 06:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47106 * 2 1 4 4 O 1.21280 * 120.00128 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99583 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.63338 * 359.97438 * 5 3 2 7 7 C 1.53188 * 108.77163 * 233.60783 * 6 5 3 8 8 C 1.53040 * 109.31742 * 305.36335 * 7 6 5 9 9 C 1.53046 * 109.53453 * 61.37023 * 8 7 6 10 10 H 1.08995 * 109.50124 * 58.61680 * 9 8 7 11 11 C 1.50704 * 109.49709 * 178.68505 * 9 8 7 12 12 O 1.21296 * 119.99436 * 24.74296 * 11 9 8 13 13 N 1.34770 * 120.00065 * 204.74761 * 11 9 8 14 14 C 1.37104 * 119.99771 * 354.05501 * 13 11 9 15 15 H 1.08003 * 120.00065 * 347.51128 * 14 13 11 16 16 C 1.38953 * 119.99757 * 167.50959 * 14 13 11 17 17 N 1.31407 * 119.99741 * 4.30761 * 16 14 13 18 18 Si 1.86797 * 119.99884 * 184.30867 * 16 14 13 19 19 H 1.48498 * 109.47077 * 59.99943 * 18 16 14 20 20 H 1.48499 * 109.47180 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47151 * 300.00228 * 18 16 14 22 22 C 1.46495 * 120.00031 * 174.06008 * 13 11 9 23 23 C 1.53000 * 109.46784 * 265.00974 * 22 13 11 24 24 C 1.46942 * 120.59918 * 180.02562 * 5 3 2 25 25 H 1.08999 * 109.47526 * 59.99849 * 1 2 3 26 26 H 1.09003 * 109.47252 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47439 * 300.00000 * 1 2 3 28 28 H 1.08999 * 109.46759 * 239.99700 * 2 1 3 29 29 H 1.09001 * 109.46648 * 119.99931 * 2 1 3 30 30 H 1.08996 * 109.58302 * 113.82323 * 6 5 3 31 31 H 1.08996 * 109.58258 * 353.39435 * 6 5 3 32 32 H 1.09004 * 109.49498 * 185.41384 * 7 6 5 33 33 H 1.09003 * 109.52567 * 65.34033 * 7 6 5 34 34 H 1.08997 * 109.45907 * 301.35035 * 8 7 6 35 35 H 1.08995 * 109.44832 * 181.37855 * 8 7 6 36 36 H 0.97003 * 119.99729 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.47216 * 145.01805 * 22 13 11 38 38 H 1.09003 * 109.47258 * 25.01047 * 22 13 11 39 39 H 1.09004 * 109.47381 * 67.48714 * 23 22 13 40 40 H 1.08999 * 109.47695 * 307.47906 * 23 22 13 41 41 H 1.09010 * 109.47243 * 187.47896 * 23 22 13 42 42 H 1.08997 * 109.61755 * 6.61591 * 24 5 3 43 43 H 1.08997 * 109.55809 * 246.19150 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3244 0.5608 -0.0005 7 6 5.2971 0.7564 1.1666 8 6 5.9315 2.1457 1.0696 9 6 4.8403 3.2144 1.1662 10 1 4.3047 3.1034 2.1089 11 6 5.4692 4.5825 1.1030 12 8 6.5444 4.7312 0.5617 13 7 4.8369 5.6406 1.6479 14 6 3.5696 5.4973 2.1510 15 1 3.0006 4.6050 1.9353 16 6 3.0172 6.5001 2.9384 17 7 3.6749 7.6213 3.1312 18 14 1.3398 6.2544 3.7228 19 1 1.3825 5.0740 4.6229 20 1 0.9788 7.4620 4.5079 21 1 0.3250 6.0313 2.6618 22 6 5.5037 6.9439 1.7026 23 6 6.1831 7.1123 3.0631 24 6 3.8618 3.0472 0.0000 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 4.8768 0.5585 -0.9401 31 1 3.7968 -0.3856 0.1181 32 1 6.0772 -0.0037 1.1213 33 1 4.7574 0.6678 2.1095 34 1 6.4508 2.2420 0.1161 35 1 6.6423 2.2778 1.8852 36 1 3.2891 8.3216 3.6806 37 1 4.7669 7.7351 1.5641 38 1 6.2526 7.0023 0.9127 39 1 7.0087 6.4055 3.1470 40 1 5.4601 6.9224 3.8564 41 1 6.5648 8.1292 3.1552 42 1 3.0295 3.7409 0.1192 43 1 4.3760 3.2481 -0.9398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068232181.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:13 Heat of formation + Delta-G solvation = -65.689140 kcal Electronic energy + Delta-G solvation = -23830.850933 eV Core-core repulsion = 20490.335229 eV Total energy + Delta-G solvation = -3340.515704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13408 -38.68503 -36.82386 -35.05682 -33.09286 -32.24189 -31.49936 -31.06554 -29.29840 -25.79050 -24.90013 -24.30541 -22.97041 -21.95879 -20.34553 -18.99849 -18.62527 -17.32795 -16.52366 -16.11583 -15.64848 -15.53221 -14.49795 -14.33638 -14.29521 -13.93449 -13.61319 -13.26296 -13.06184 -12.97752 -12.52645 -12.47278 -12.28007 -11.91777 -11.76908 -11.50041 -11.43050 -11.19567 -11.08770 -10.92640 -10.82300 -10.69855 -10.49770 -10.32141 -10.13714 -10.05398 -9.80907 -9.56305 -8.81686 -8.50371 -8.20595 -7.72347 -6.21427 -3.88946 2.83581 3.12996 3.19660 3.22989 3.28359 3.89818 4.11198 4.58802 4.70236 4.95731 5.03318 5.05065 5.09096 5.11585 5.22278 5.41023 5.54023 5.64390 5.70995 5.72612 5.81127 5.90646 6.01123 6.04970 6.19523 6.25205 6.31123 6.36152 6.59037 6.65252 6.72425 6.82293 6.87060 6.95588 7.12562 7.37378 7.57768 7.63246 7.80557 7.89458 8.40644 8.49640 9.09623 9.56635 9.95192 10.64591 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.006898 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.552965 B = 4058.167438 C = 5499.211157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C 0.508 3.492 4 O -0.536 6.536 5 N -0.611 5.611 6 C 0.107 3.893 7 C -0.135 4.135 8 C -0.098 4.098 9 C -0.102 4.102 10 H 0.090 0.910 11 C 0.455 3.545 12 O -0.612 6.612 13 N -0.437 5.437 14 C -0.324 4.324 15 H 0.100 0.900 16 C 0.033 3.967 17 N -0.867 5.867 18 Si 0.922 3.078 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.129 3.871 23 C -0.127 4.127 24 C 0.124 3.876 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.266 0.734 37 H 0.109 0.891 38 H 0.035 0.965 39 H 0.012 0.988 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.104 0.896 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 -14.074 -2.941 14.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.296 3.704 4 O -0.413 6.413 5 N -0.345 5.345 6 C -0.016 4.016 7 C -0.173 4.173 8 C -0.136 4.136 9 C -0.124 4.124 10 H 0.109 0.891 11 C 0.243 3.757 12 O -0.500 6.500 13 N -0.153 5.153 14 C -0.452 4.452 15 H 0.118 0.882 16 C -0.170 4.170 17 N -0.507 5.507 18 Si 0.749 3.251 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.195 1.195 22 C 0.006 3.994 23 C -0.186 4.186 24 C 0.002 3.998 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.127 0.873 38 H 0.053 0.947 39 H 0.031 0.969 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.122 0.878 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.626 -13.256 -3.085 13.707 hybrid contribution -0.722 -0.058 0.616 0.951 sum -2.348 -13.314 -2.469 13.743 Atomic orbital electron populations 1.21535 0.93232 1.01195 1.03501 1.21646 0.98429 0.94313 1.03829 1.20752 0.81812 0.91747 0.76131 1.90729 1.54665 1.46487 1.49380 1.48214 1.05441 1.07592 1.73246 1.21753 0.91201 0.89429 0.99204 1.21953 0.98573 0.98302 0.98482 1.21308 0.97101 0.92069 1.03146 1.21362 0.96612 0.94269 1.00203 0.89150 1.19775 0.85975 0.85651 0.84344 1.90507 1.23771 1.85533 1.50173 1.43887 1.13790 1.07496 1.50161 1.19756 0.90709 1.05869 1.28893 0.88189 1.25260 0.99651 0.95376 0.96724 1.70222 1.37146 1.05511 1.37773 0.86044 0.81960 0.77694 0.79423 1.19988 1.20852 1.19537 1.21453 0.96133 0.86470 0.95318 1.21986 0.98301 0.97716 1.00549 1.21554 0.98345 0.82292 0.97630 0.92033 0.92375 0.91897 0.89253 0.89115 0.91331 0.90013 0.90819 0.91551 0.91126 0.91686 0.92296 0.87291 0.94660 0.96873 0.90145 0.94669 0.87818 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.20 37.16 0.34 -1.12 16 2 C -0.14 -1.50 4.77 -27.88 -0.13 -1.63 16 3 C 0.51 7.96 7.70 -10.99 -0.08 7.87 16 4 O -0.54 -10.85 15.39 5.56 0.09 -10.76 16 5 N -0.61 -9.28 2.97 -172.79 -0.51 -9.79 16 6 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 7 C -0.13 -1.61 6.08 -26.61 -0.16 -1.77 16 8 C -0.10 -1.61 4.67 -26.69 -0.12 -1.73 16 9 C -0.10 -2.02 1.82 -91.67 -0.17 -2.19 16 10 H 0.09 1.88 6.96 -51.93 -0.36 1.52 16 11 C 0.45 11.07 6.74 -10.99 -0.07 11.00 16 12 O -0.61 -16.23 15.61 5.54 0.09 -16.14 16 13 N -0.44 -11.22 2.63 -114.81 -0.30 -11.52 16 14 C -0.32 -8.34 8.82 -14.93 -0.13 -8.47 16 15 H 0.10 2.52 5.20 -52.48 -0.27 2.25 16 16 C 0.03 0.84 5.21 -17.47 -0.09 0.75 16 17 N -0.87 -22.10 7.36 55.50 0.41 -21.69 16 18 Si 0.92 20.35 29.55 -169.99 -5.02 15.32 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 C 0.13 3.27 5.49 -4.04 -0.02 3.24 16 23 C -0.13 -3.04 9.30 37.16 0.35 -2.69 16 24 C 0.12 2.33 5.50 -3.73 -0.02 2.31 16 25 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 28 H 0.09 0.73 7.94 -51.93 -0.41 0.32 16 29 H 0.09 0.79 7.69 -51.93 -0.40 0.39 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.20 7.92 -51.93 -0.41 0.79 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 37 H 0.11 2.88 5.94 -51.93 -0.31 2.57 16 38 H 0.04 0.90 7.21 -51.93 -0.37 0.53 16 39 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 2.05 6.12 -51.93 -0.32 1.73 16 41 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 42 H 0.10 2.25 5.72 -51.93 -0.30 1.95 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -30.63 332.78 -7.41 -38.05 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.82 Total: 4.79 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.35 Total: 6.73 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.41 Total: -43.00 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: 0.17 Total: -26.90 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.63 -7.41 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068232181.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.643 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds