Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 109.46994 * 2 1 4 4 O 1.21288 * 120.00008 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99924 * 180.02562 * 3 2 1 6 6 C 1.46921 * 120.62899 * 0.02562 * 5 3 2 7 7 C 1.53191 * 108.77418 * 126.37265 * 6 5 3 8 8 C 1.53041 * 109.31343 * 54.63110 * 7 6 5 9 9 C 1.53038 * 109.53846 * 298.63394 * 8 7 6 10 10 H 1.09001 * 109.52225 * 301.39848 * 9 8 7 11 11 C 1.50698 * 109.49787 * 181.31589 * 9 8 7 12 12 O 1.21291 * 119.99881 * 345.84750 * 11 9 8 13 13 N 1.34776 * 120.00243 * 165.84858 * 11 9 8 14 14 C 1.46492 * 119.99750 * 4.54043 * 13 11 9 15 15 C 1.46503 * 120.00053 * 184.54801 * 13 11 9 16 16 C 1.50701 * 109.46691 * 269.99427 * 15 13 11 17 17 H 1.07999 * 120.00306 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99866 * 179.97438 * 16 15 13 19 19 N 1.31512 * 120.00072 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99782 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47148 * 89.99932 * 20 18 16 22 22 H 1.48502 * 109.46786 * 209.99329 * 20 18 16 23 23 H 1.48497 * 109.47219 * 329.99310 * 20 18 16 24 24 C 1.46919 * 120.62769 * 179.97438 * 5 3 2 25 25 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47318 * 300.00126 * 1 2 3 27 27 H 1.08998 * 109.46885 * 60.00380 * 1 2 3 28 28 H 1.08996 * 109.47318 * 239.99874 * 2 1 3 29 29 H 1.08998 * 109.46885 * 119.99620 * 2 1 3 30 30 H 1.08997 * 109.58430 * 246.15454 * 6 5 3 31 31 H 1.08996 * 109.59085 * 6.43871 * 6 5 3 32 32 H 1.08998 * 109.49670 * 174.58877 * 7 6 5 33 33 H 1.09004 * 109.49841 * 294.67877 * 7 6 5 34 34 H 1.09007 * 109.45874 * 178.61479 * 8 7 6 35 35 H 1.09001 * 109.45638 * 58.65807 * 8 7 6 36 36 H 1.09000 * 109.47867 * 264.52007 * 14 13 11 37 37 H 1.09000 * 109.47367 * 24.51731 * 14 13 11 38 38 H 1.09003 * 109.47323 * 144.51682 * 14 13 11 39 39 H 1.08997 * 109.46704 * 150.00078 * 15 13 11 40 40 H 1.08992 * 109.47060 * 29.99603 * 15 13 11 41 41 H 0.97001 * 119.99996 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.59077 * 113.84382 * 24 5 3 43 43 H 1.09006 * 109.70829 * 353.48619 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3575 1.6671 -0.0005 6 6 4.3244 0.5610 -0.0017 7 6 5.2959 0.7566 -1.1699 8 6 5.9303 2.1460 -1.0734 9 6 4.8390 3.2146 -1.1687 10 1 4.3019 3.1038 -2.1107 11 6 5.4679 4.5827 -1.1061 12 8 6.6186 4.7051 -0.7429 13 7 4.7516 5.6702 -1.4537 14 6 3.3339 5.5345 -1.7966 15 6 5.3909 6.9879 -1.4888 16 6 5.2611 7.6452 -0.1389 17 1 4.7536 7.1326 0.6648 18 6 5.7913 8.9007 0.0703 19 7 5.6784 9.4741 1.2484 20 14 6.6697 9.7871 -1.3197 21 1 5.6907 10.5998 -2.0854 22 1 7.7174 10.6758 -0.7559 23 1 7.2994 8.7904 -2.2226 24 6 3.8623 3.0469 -0.0011 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.8779 0.5586 0.9373 31 1 3.7967 -0.3857 -0.1171 32 1 6.0759 -0.0035 -1.1255 33 1 4.7546 0.6684 -2.1119 34 1 6.6405 2.2784 -1.8898 35 1 6.4506 2.2422 -0.1205 36 1 3.2280 5.4497 -2.8781 37 1 2.9288 4.6414 -1.3208 38 1 2.7897 6.4115 -1.4460 39 1 4.9052 7.6073 -2.2427 40 1 6.4460 6.8733 -1.7372 41 1 6.0511 10.3575 1.3955 42 1 4.3781 3.2477 0.9379 43 1 3.0311 3.7424 -0.1174 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077570374.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -71.427673 kcal Electronic energy + Delta-G solvation = -23232.651090 eV Core-core repulsion = 19891.886544 eV Total energy + Delta-G solvation = -3340.764546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.57696 -39.15399 -37.10336 -34.97303 -33.45523 -32.59628 -32.52021 -31.31674 -28.36533 -26.27698 -25.90074 -24.62467 -23.26076 -22.41583 -20.79679 -18.99183 -18.44127 -17.32743 -16.93308 -16.44987 -16.04215 -15.87737 -15.32772 -14.93320 -14.41282 -14.12868 -13.96569 -13.81789 -13.32586 -13.20838 -12.95741 -12.73312 -12.47381 -12.36705 -12.04449 -11.97129 -11.88323 -11.52973 -11.47894 -11.38385 -11.10399 -10.93441 -10.86925 -10.54886 -10.43693 -10.09164 -9.89798 -9.51926 -9.05324 -8.70213 -8.56774 -7.68848 -6.05861 -4.04405 2.51987 2.77800 3.28694 3.34069 3.36590 3.40580 3.82999 4.30153 4.41888 4.56663 4.74081 4.75913 4.81402 4.86127 4.99439 5.05111 5.14551 5.25742 5.29854 5.35080 5.46983 5.53509 5.55455 5.68493 5.70991 5.75249 5.79452 5.89857 5.97124 6.01454 6.12202 6.31449 6.32956 6.34973 6.68622 6.97178 7.27289 7.34167 7.63379 8.07213 8.24701 8.49378 8.93237 8.99574 9.54195 11.07619 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.004282 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.643059 B = 6537.499640 C = 7131.451277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.511 3.489 4 O -0.538 6.538 5 N -0.612 5.612 6 C 0.104 3.896 7 C -0.134 4.134 8 C -0.101 4.101 9 C -0.119 4.119 10 H 0.091 0.909 11 C 0.512 3.488 12 O -0.535 6.535 13 N -0.595 5.595 14 C 0.071 3.929 15 C 0.215 3.785 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.115 3.885 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.026 0.974 40 H 0.040 0.960 41 H 0.264 0.736 42 H 0.076 0.924 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 -22.243 -5.966 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.299 3.701 4 O -0.415 6.415 5 N -0.346 5.346 6 C -0.019 4.019 7 C -0.172 4.172 8 C -0.139 4.139 9 C -0.142 4.142 10 H 0.109 0.891 11 C 0.297 3.703 12 O -0.412 6.412 13 N -0.326 5.326 14 C -0.072 4.072 15 C 0.095 3.905 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.189 1.189 24 C -0.008 4.008 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.025 -21.483 -5.671 23.021 hybrid contribution 0.513 0.660 -0.624 1.043 sum -5.512 -20.823 -6.295 22.441 Atomic orbital electron populations 1.21542 0.93019 1.01443 1.03517 1.21656 0.98589 0.93937 1.04044 1.20815 0.81556 0.91958 0.75762 1.90720 1.54671 1.46549 1.49510 1.48176 1.05657 1.07235 1.73511 1.21815 0.91172 0.89420 0.99444 1.21945 0.98762 0.98054 0.98448 1.21336 0.96613 0.91847 1.04073 1.21669 0.97834 0.94238 1.00443 0.89102 1.20118 0.86646 0.85331 0.78176 1.90674 1.17986 1.86316 1.46242 1.47851 1.09985 1.08618 1.66193 1.21932 0.82530 1.03375 0.99376 1.19668 0.94015 0.78959 0.97869 1.21326 1.37319 1.01508 0.96399 0.90727 1.24861 0.95474 0.97117 0.95600 1.69900 1.45890 1.15742 1.22074 0.86858 0.80096 0.80058 0.82785 1.20108 1.20953 1.18907 1.21730 0.98069 0.83060 0.97912 0.92196 0.91908 0.91926 0.88999 0.89014 0.90948 0.89617 0.90258 0.91489 0.91006 0.90487 0.93641 0.91041 0.90524 0.95652 0.94234 0.92594 0.90568 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 2 C -0.14 -1.09 4.77 -27.88 -0.13 -1.22 16 3 C 0.51 6.19 7.70 -10.98 -0.08 6.11 16 4 O -0.54 -8.73 15.40 5.55 0.09 -8.65 16 5 N -0.61 -7.07 2.97 -172.81 -0.51 -7.58 16 6 C 0.10 0.84 6.34 -3.71 -0.02 0.82 16 7 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 8 C -0.10 -1.26 4.54 -26.69 -0.12 -1.38 16 9 C -0.12 -1.76 1.84 -91.68 -0.17 -1.93 16 10 H 0.09 1.22 7.65 -51.93 -0.40 0.82 16 11 C 0.51 10.44 6.91 -10.99 -0.08 10.36 16 12 O -0.54 -13.08 15.65 5.55 0.09 -12.99 16 13 N -0.60 -12.60 2.86 -182.96 -0.52 -13.13 16 14 C 0.07 1.20 10.01 59.84 0.60 1.80 16 15 C 0.22 5.39 4.22 -5.19 -0.02 5.37 16 16 C -0.53 -15.47 9.94 -34.44 -0.34 -15.81 16 17 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 20 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 24 C 0.11 1.67 5.39 -3.74 -0.02 1.65 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.09 0.52 7.69 -51.93 -0.40 0.12 16 29 H 0.09 0.54 7.94 -51.93 -0.41 0.12 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.45 5.93 -51.93 -0.31 0.14 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.07 7.99 -51.93 -0.41 0.65 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.10 3.98 -51.93 -0.21 0.90 16 38 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 39 H 0.03 0.60 7.50 -51.93 -0.39 0.21 16 40 H 0.04 1.06 6.55 -51.93 -0.34 0.72 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.11 1.74 4.37 -51.93 -0.23 1.52 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -36.10 338.74 -6.87 -42.97 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.91 Total: -1.30 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.31 Total: 5.74 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.26 Total: -48.06 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.10 -6.87 -42.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077570374.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.457 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds