Wall clock time and date at job start Tue Mar 31 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.99328 * 2 1 4 4 O 1.43747 * 109.87808 * 121.08885 * 2 1 3 5 5 C 1.44381 * 106.97791 * 145.93385 * 4 2 1 6 6 C 1.55005 * 103.48932 * 319.94058 * 5 4 2 7 7 C 1.54103 * 109.87627 * 238.91493 * 2 1 3 8 8 H 1.09004 * 110.48611 * 119.74304 * 7 2 1 9 9 C 1.50697 * 110.49064 * 357.22546 * 7 2 1 10 10 O 1.21282 * 120.00081 * 272.61622 * 9 7 2 11 11 N 1.34782 * 119.99833 * 92.33374 * 9 7 2 12 12 C 1.46501 * 119.99723 * 180.27924 * 11 9 7 13 13 C 1.53047 * 109.46028 * 275.02917 * 12 11 9 14 14 C 1.53186 * 109.31347 * 178.60220 * 13 12 11 15 15 N 1.46932 * 108.76285 * 54.65597 * 14 13 12 16 16 C 1.36941 * 120.62809 * 126.41062 * 15 14 13 17 17 H 1.08001 * 119.99381 * 207.98352 * 16 15 14 18 18 C 1.38811 * 120.00290 * 27.96895 * 16 15 14 19 19 N 1.31618 * 119.99896 * 18.63098 * 18 16 15 20 20 Si 1.86800 * 119.99914 * 198.62455 * 18 16 15 21 21 H 1.48497 * 109.47109 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46785 * 120.00508 * 20 18 16 23 23 H 1.48498 * 109.46973 * 240.00335 * 20 18 16 24 24 C 1.46925 * 118.74072 * 306.38154 * 15 14 13 25 25 C 1.53043 * 109.45972 * 154.97884 * 12 11 9 26 26 H 1.08998 * 109.47342 * 180.95613 * 1 2 3 27 27 H 1.08999 * 109.46826 * 300.96054 * 1 2 3 28 28 H 1.08996 * 109.46826 * 60.95324 * 1 2 3 29 29 H 1.08999 * 110.61846 * 78.43294 * 5 4 2 30 30 H 1.08994 * 110.62387 * 201.27719 * 5 4 2 31 31 H 1.08994 * 110.90427 * 278.82187 * 6 5 4 32 32 H 1.08995 * 110.90763 * 155.22157 * 6 5 4 33 33 H 0.97000 * 120.00024 * 0.28601 * 11 9 7 34 34 H 1.08999 * 109.46549 * 35.00289 * 12 11 9 35 35 H 1.08998 * 109.49532 * 298.56941 * 13 12 11 36 36 H 1.08997 * 109.49736 * 58.66351 * 13 12 11 37 37 H 1.08999 * 109.60033 * 294.86860 * 14 13 12 38 38 H 1.08997 * 109.58730 * 174.43310 * 14 13 12 39 39 H 0.97000 * 119.99620 * 179.97438 * 19 18 16 40 40 H 1.08995 * 109.58332 * 293.82340 * 24 15 14 41 41 H 1.08992 * 109.58474 * 173.39846 * 24 15 14 42 42 H 1.09007 * 109.49386 * 301.33465 * 25 12 11 43 43 H 1.09004 * 109.49755 * 61.42829 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 8 2.0188 -0.6980 1.1577 5 6 3.2379 -1.3643 0.7647 6 6 2.9194 -1.8916 -0.6577 7 6 2.0539 -0.7483 -1.2411 8 1 2.6601 -0.0853 -1.8586 9 6 0.9073 -1.3104 -2.0412 10 8 0.4626 -2.4071 -1.7756 11 7 0.3723 -0.5921 -3.0484 12 6 -0.7464 -1.1360 -3.8222 13 6 -0.2058 -2.0293 -4.9412 14 6 -1.3790 -2.6240 -5.7263 15 7 -2.2398 -1.5281 -6.1921 16 6 -2.5690 -1.4142 -7.5165 17 1 -2.7891 -0.4438 -7.9365 18 6 -2.6194 -2.5456 -8.3190 19 7 -2.7178 -3.7379 -7.7702 20 14 -2.5477 -2.3761 -10.1779 21 1 -2.4383 -0.9402 -10.5402 22 1 -1.3645 -3.1085 -10.6964 23 1 -3.7827 -2.9450 -10.7748 24 6 -2.7412 -0.5573 -5.2099 25 6 -1.5527 0.0139 -4.4303 26 1 -0.3634 -1.0275 0.0171 27 1 -0.3633 0.5287 0.8813 28 1 -0.3633 0.4989 -0.8984 29 1 4.0685 -0.6591 0.7355 30 1 3.4599 -2.1892 1.4416 31 1 2.3539 -2.8221 -0.6100 32 1 3.8330 -2.0226 -1.2376 33 1 0.7279 0.2850 -3.2608 34 1 -1.3895 -1.7237 -3.1671 35 1 0.4173 -1.4366 -5.6109 36 1 0.3879 -2.8348 -4.5089 37 1 -1.9518 -3.2891 -5.0801 38 1 -1.0003 -3.1807 -6.5835 39 1 -2.7534 -4.5285 -8.3311 40 1 -3.4250 -1.0539 -4.5216 41 1 -3.2612 0.2495 -5.7263 42 1 -1.9178 0.6630 -3.6343 43 1 -0.9167 0.5873 -5.1049 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094177510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:59 Heat of formation + Delta-G solvation = -68.500784 kcal Electronic energy + Delta-G solvation = -23219.274510 eV Core-core repulsion = 19878.636883 eV Total energy + Delta-G solvation = -3340.637627 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71610 -38.75591 -37.21539 -34.44426 -32.86197 -31.95372 -31.62248 -30.05013 -29.45516 -26.60853 -25.01944 -22.89995 -22.37365 -22.26138 -21.34557 -19.90992 -19.09030 -17.26212 -17.00698 -16.46704 -16.00419 -15.76157 -15.13628 -14.71329 -14.70831 -13.94645 -13.68804 -13.53008 -13.11551 -13.04201 -12.68822 -12.57163 -12.45612 -12.30829 -12.14191 -11.50044 -11.42383 -11.18684 -11.17140 -11.09416 -10.90588 -10.74994 -10.42060 -10.24189 -10.11204 -10.04149 -9.77429 -9.73366 -9.41504 -8.72202 -8.43859 -6.70493 -5.80361 -3.22452 2.69687 3.27380 3.36607 3.44269 3.46340 3.61788 4.23717 4.48410 4.48702 4.65390 4.83104 4.95606 5.05264 5.14777 5.25546 5.31627 5.37442 5.41414 5.44216 5.51905 5.60839 5.67499 5.78059 5.80610 5.95809 6.05409 6.10026 6.22054 6.33737 6.40703 6.58286 6.63232 6.65691 6.74942 6.89376 6.92286 7.34546 7.63323 7.69387 7.78972 8.37754 8.43306 9.19202 9.82908 10.39715 11.28343 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039372 B = 0.003591 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.990653 B = 7795.569698 C = 8104.770760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 H 0.076 0.924 4 O -0.371 6.371 5 C 0.048 3.952 6 C -0.143 4.143 7 C -0.146 4.146 8 H 0.100 0.900 9 C 0.526 3.474 10 O -0.534 6.534 11 N -0.725 5.725 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.174 3.826 15 N -0.592 5.592 16 C -0.256 4.256 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.899 5.899 20 Si 0.901 3.099 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.148 3.852 25 C -0.138 4.138 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.394 0.606 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.087 0.913 39 H 0.254 0.746 40 H 0.020 0.980 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 8.931 13.906 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.093 0.907 4 O -0.290 6.290 5 C -0.028 4.028 6 C -0.181 4.181 7 C -0.168 4.168 8 H 0.118 0.882 9 C 0.311 3.689 10 O -0.410 6.410 11 N -0.374 5.374 12 C 0.047 3.953 13 C -0.186 4.186 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.543 5.543 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.021 3.979 25 C -0.178 4.178 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.015 7.973 14.198 19.659 hybrid contribution 0.437 0.473 -1.366 1.510 sum 11.452 8.446 12.832 19.161 Atomic orbital electron populations 1.22135 0.93294 1.04195 1.02702 1.22561 0.95661 0.94942 0.83406 0.90668 1.88908 1.39761 1.67672 1.32625 1.23546 0.87500 0.96381 0.95384 1.23159 0.99825 0.99299 0.95815 1.22841 0.96833 0.99271 0.97865 0.88192 1.20024 0.83643 0.85333 0.79896 1.90710 1.61824 1.20393 1.68109 1.46399 1.36189 1.20947 1.33913 1.21046 0.86579 0.95357 0.92284 1.22550 1.00657 0.98638 0.96764 1.20732 0.88160 0.89356 0.96966 1.44115 1.54428 1.29301 1.03681 1.19203 1.42752 0.92382 0.84210 0.91603 1.25050 1.00541 0.95659 0.98307 1.70067 1.52822 0.97380 1.34037 0.86257 0.77324 0.77572 0.85813 1.20245 1.21557 1.21709 1.20836 0.92300 0.93139 0.91615 1.22336 0.99499 0.96813 0.99191 0.90704 0.91599 0.90807 0.92161 0.88684 0.88296 0.89874 0.77258 0.90039 0.92702 0.92926 0.96114 0.89496 0.93623 0.96207 0.92333 0.92652 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 8.41 37.16 0.31 -1.57 16 2 C 0.09 0.96 4.05 -26.15 -0.11 0.85 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 O -0.37 -4.42 11.19 -35.23 -0.39 -4.82 16 5 C 0.05 0.44 7.72 38.22 0.30 0.73 16 6 C -0.14 -1.45 6.65 -24.72 -0.16 -1.61 16 7 C -0.15 -1.52 3.43 -90.24 -0.31 -1.83 16 8 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 9 C 0.53 7.39 4.76 -10.98 -0.05 7.34 16 10 O -0.53 -9.82 14.67 5.56 0.08 -9.73 16 11 N -0.72 -9.59 4.54 -53.76 -0.24 -9.83 16 12 C 0.15 2.54 2.42 -67.88 -0.16 2.38 16 13 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 14 C 0.17 4.22 5.31 -3.71 -0.02 4.20 16 15 N -0.59 -14.69 2.99 -172.33 -0.52 -15.21 16 16 C -0.26 -6.96 9.57 -15.06 -0.14 -7.10 16 17 H 0.07 1.75 7.90 -52.49 -0.41 1.34 16 18 C 0.00 0.09 4.87 -17.43 -0.08 0.01 16 19 N -0.90 -26.25 11.30 55.49 0.63 -25.62 16 20 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 25 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 26 H 0.07 1.06 6.95 -51.93 -0.36 0.70 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.78 7.19 -51.93 -0.37 0.41 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 1.26 6.88 -51.93 -0.36 0.90 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.39 4.02 8.60 -40.82 -0.35 3.67 16 34 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 2.35 6.11 -51.93 -0.32 2.04 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 335.65 15.07 5.06 5.06 Total: -1.00 -32.05 335.65 -8.37 -40.42 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.19 Total: 2.24 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -0.76 Total: 0.99 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.13 Total: -50.66 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.31 Total: -14.55 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.05 -8.37 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094177510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.085 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds