Wall clock time and date at job start Tue Mar 31 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.67238 * 2 1 4 4 O 1.44384 * 110.62115 * 237.03263 * 2 1 3 5 5 C 1.43737 * 106.97304 * 201.43843 * 4 2 1 6 6 C 1.54101 * 107.29920 * 26.50879 * 5 4 2 7 7 C 1.54809 * 104.18341 * 357.97494 * 6 5 4 8 8 H 1.08997 * 110.91190 * 97.35411 * 7 6 5 9 9 C 1.50710 * 110.90318 * 220.91995 * 7 6 5 10 10 O 1.21276 * 120.00283 * 118.54824 * 9 7 6 11 11 N 1.34775 * 119.99619 * 298.54398 * 9 7 6 12 12 C 1.46504 * 119.99908 * 180.02562 * 11 9 7 13 13 C 1.53041 * 109.46089 * 155.00121 * 12 11 9 14 14 C 1.53193 * 109.31105 * 181.38454 * 13 12 11 15 15 N 1.46928 * 108.77520 * 305.36495 * 14 13 12 16 16 C 1.36940 * 120.62959 * 233.58553 * 15 14 13 17 17 H 1.07992 * 119.99796 * 152.32566 * 16 15 14 18 18 C 1.38808 * 119.99786 * 332.32286 * 16 15 14 19 19 N 1.31614 * 120.00335 * 342.64662 * 18 16 15 20 20 Si 1.86804 * 119.99838 * 162.64095 * 18 16 15 21 21 H 1.48499 * 109.47184 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47205 * 300.00434 * 20 18 16 23 23 H 1.48499 * 109.46877 * 60.00347 * 20 18 16 24 24 C 1.46923 * 118.74171 * 53.85993 * 15 14 13 25 25 C 1.53038 * 109.45612 * 275.06643 * 12 11 9 26 26 H 1.08997 * 109.47603 * 297.03823 * 1 2 3 27 27 H 1.09003 * 109.47287 * 57.04203 * 1 2 3 28 28 H 1.09003 * 109.47026 * 177.03884 * 1 2 3 29 29 H 1.09005 * 109.88008 * 267.08453 * 5 4 2 30 30 H 1.09003 * 109.87836 * 145.93734 * 5 4 2 31 31 H 1.08994 * 110.48896 * 239.29420 * 6 5 4 32 32 H 1.09003 * 110.48671 * 116.64757 * 6 5 4 33 33 H 0.97006 * 120.00455 * 359.97438 * 11 9 7 34 34 H 1.08997 * 109.45670 * 35.02525 * 12 11 9 35 35 H 1.08999 * 109.49799 * 61.43441 * 13 12 11 36 36 H 1.08995 * 109.49434 * 301.33273 * 13 12 11 37 37 H 1.08999 * 109.58803 * 185.57393 * 14 13 12 38 38 H 1.09003 * 109.70237 * 65.22112 * 14 13 12 39 39 H 0.97006 * 120.00347 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.59145 * 65.92479 * 24 15 14 41 41 H 1.08998 * 109.59312 * 186.35605 * 24 15 14 42 42 H 1.08994 * 109.50474 * 298.56637 * 25 12 11 43 43 H 1.09005 * 109.49773 * 58.66371 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0385 -0.7353 -1.1337 5 6 3.3839 -1.1254 -0.8117 6 6 3.4795 -1.2165 0.7237 7 6 2.0758 -0.7892 1.2172 8 1 1.4552 -1.6604 1.4266 9 6 2.1796 0.0982 2.4308 10 8 1.7551 1.2335 2.3901 11 7 2.7441 -0.3700 3.5616 12 6 2.8445 0.4925 4.7416 13 6 2.9155 -0.3735 6.0015 14 6 2.9855 0.5319 7.2352 15 7 4.1131 1.4605 7.0769 16 6 5.0734 1.5639 8.0477 17 1 6.0771 1.8632 7.7846 18 6 4.7566 1.2840 9.3699 19 7 3.4978 1.2555 9.7532 20 14 6.1169 0.9475 10.6052 21 1 5.5198 0.6773 11.9377 22 1 6.9027 -0.2337 10.1667 23 1 7.0095 2.1310 10.6930 24 6 4.1876 2.2805 5.8601 25 6 4.1070 1.3514 4.6392 26 1 -0.3634 0.4671 0.9153 27 1 -0.3634 0.5591 -0.8623 28 1 -0.3633 -1.0263 -0.0531 29 1 4.0854 -0.3782 -1.1830 30 1 3.6045 -2.0964 -1.2551 31 1 4.2406 -0.5330 1.0997 32 1 3.6976 -2.2389 1.0323 33 1 3.0833 -1.2782 3.5944 34 1 1.9687 1.1392 4.7942 35 1 3.8047 -1.0026 5.9609 36 1 2.0270 -1.0019 6.0614 37 1 3.1356 -0.0766 8.1270 38 1 2.0578 1.0964 7.3300 39 1 3.2764 1.0603 10.6772 40 1 3.3557 2.9846 5.8424 41 1 5.1311 2.8261 5.8442 42 1 4.9849 0.7062 4.6115 43 1 4.0665 1.9507 3.7296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094177511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:03 Heat of formation + Delta-G solvation = -72.973383 kcal Electronic energy + Delta-G solvation = -22979.713159 eV Core-core repulsion = 19638.881586 eV Total energy + Delta-G solvation = -3340.831573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.56079 -38.84177 -37.24975 -34.49490 -32.88066 -32.02205 -31.60739 -30.12934 -29.39384 -26.77324 -24.97758 -22.85637 -22.29328 -22.09530 -21.38010 -20.04700 -19.31194 -17.65585 -16.76771 -16.32976 -16.04072 -15.39066 -15.10894 -14.74344 -14.62550 -14.07342 -13.87203 -13.59077 -13.41948 -12.99089 -12.86287 -12.53918 -12.51723 -12.40124 -12.06685 -11.58423 -11.48535 -11.30056 -11.15458 -10.97296 -10.87918 -10.73671 -10.53114 -10.33014 -10.07440 -9.97982 -9.85151 -9.71172 -9.46588 -8.76965 -8.48083 -6.72045 -5.82291 -3.24398 2.66170 3.21257 3.36558 3.42270 3.43247 3.61860 4.24443 4.40555 4.47144 4.55161 4.80164 4.94870 5.03167 5.20371 5.30346 5.33978 5.39164 5.39565 5.46983 5.50032 5.55621 5.66639 5.67705 5.83055 5.88006 6.03181 6.03820 6.21791 6.29519 6.48909 6.50846 6.55237 6.65953 6.75896 6.86410 6.95428 7.28086 7.55297 7.66340 7.76799 8.30929 8.41566 9.17774 9.81029 10.37897 11.26518 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039823 B = 0.003400 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.941958 B = 8232.804747 C = 8434.565990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.094 3.906 3 H 0.084 0.916 4 O -0.376 6.376 5 C 0.050 3.950 6 C -0.148 4.148 7 C -0.144 4.144 8 H 0.110 0.890 9 C 0.521 3.479 10 O -0.538 6.538 11 N -0.721 5.721 12 C 0.150 3.850 13 C -0.146 4.146 14 C 0.174 3.826 15 N -0.593 5.593 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.290 1.290 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.147 3.853 25 C -0.138 4.138 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.021 0.979 39 H 0.255 0.745 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -7.555 -17.559 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.036 3.964 3 H 0.102 0.898 4 O -0.295 6.295 5 C -0.027 4.027 6 C -0.186 4.186 7 C -0.166 4.166 8 H 0.128 0.872 9 C 0.306 3.694 10 O -0.415 6.415 11 N -0.371 5.371 12 C 0.047 3.953 13 C -0.186 4.186 14 C 0.047 3.953 15 N -0.315 5.315 16 C -0.384 4.384 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.216 1.216 22 H -0.211 1.211 23 H -0.209 1.209 24 C 0.020 3.980 25 C -0.179 4.179 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.229 0.771 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.729 -6.787 -17.581 19.042 hybrid contribution 1.028 -0.690 0.943 1.557 sum -1.701 -7.477 -16.638 18.320 Atomic orbital electron populations 1.21758 0.92594 1.02564 1.03152 1.22941 0.95639 0.95442 0.82350 0.89827 1.88883 1.27627 1.73899 1.39141 1.23104 0.84911 1.00620 0.94109 1.22948 0.96114 1.03258 0.96269 1.22979 0.98716 0.99956 0.94917 0.87166 1.20146 0.77605 0.87687 0.83931 1.90710 1.48154 1.19141 1.83491 1.46369 1.60799 1.17113 1.12788 1.21071 0.99069 0.91986 0.83213 1.22530 1.00587 0.99086 0.96399 1.20745 0.89659 0.90847 0.94010 1.44103 1.27156 1.42357 1.17912 1.19157 0.89832 1.42988 0.86418 0.91653 1.25044 0.96000 1.01694 0.96862 1.70016 1.15978 1.52194 1.16559 0.86360 0.81451 0.78461 0.80438 1.21619 1.21054 1.20860 1.20962 0.99105 0.91896 0.86015 1.22444 0.96973 0.98984 0.99461 0.90399 0.91722 0.92053 0.92134 0.89617 0.89940 0.89572 0.77094 0.90017 0.92181 0.92756 0.88987 0.96105 0.93519 0.96135 0.92542 0.92349 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.66 37.16 0.36 -1.12 16 2 C 0.09 1.07 3.02 -25.68 -0.08 0.99 16 3 H 0.08 1.08 7.53 -51.93 -0.39 0.69 16 4 O -0.38 -4.29 11.22 -35.23 -0.40 -4.68 16 5 C 0.05 0.43 7.70 37.73 0.29 0.72 16 6 C -0.15 -1.24 6.55 -25.20 -0.16 -1.40 16 7 C -0.14 -1.49 2.95 -89.76 -0.26 -1.75 16 8 H 0.11 0.98 8.06 -51.93 -0.42 0.56 16 9 C 0.52 7.13 7.01 -10.98 -0.08 7.05 16 10 O -0.54 -9.41 15.35 5.56 0.09 -9.33 16 11 N -0.72 -9.56 5.03 -53.76 -0.27 -9.83 16 12 C 0.15 2.53 2.41 -67.89 -0.16 2.37 16 13 C -0.15 -2.61 5.55 -26.61 -0.15 -2.75 16 14 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 15 N -0.59 -14.64 2.99 -172.05 -0.51 -15.16 16 16 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 19 N -0.90 -25.83 11.19 55.49 0.62 -25.21 16 20 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.15 3.14 6.54 -3.48 -0.02 3.11 16 25 C -0.14 -2.47 5.67 -26.38 -0.15 -2.62 16 26 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.74 7.85 -51.93 -0.41 0.34 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.40 4.18 8.60 -40.82 -0.35 3.83 16 34 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -30.91 340.91 -8.34 -39.24 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.30 Total: 1.97 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.67 Total: 1.54 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.16 Total: -50.20 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.31 Total: -14.01 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.91 -8.34 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094177511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.729 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds