Wall clock time and date at job start Tue Mar 31 2020 07:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.42325 * 2 1 4 4 O 1.44420 * 110.37434 * 122.31467 * 2 1 3 5 5 C 1.44427 * 105.27952 * 159.33930 * 4 2 1 6 6 C 1.54473 * 104.80123 * 319.48931 * 5 4 2 7 7 C 1.54483 * 110.36911 * 237.69270 * 2 1 3 8 8 H 1.08996 * 110.62917 * 335.88830 * 7 2 1 9 9 C 1.50700 * 110.51175 * 98.54678 * 7 2 1 10 10 O 1.21284 * 119.99997 * 356.09449 * 9 7 2 11 11 N 1.34770 * 120.00075 * 176.09084 * 9 7 2 12 12 C 1.46498 * 120.00080 * 179.97438 * 11 9 7 13 13 C 1.53039 * 109.46168 * 155.00472 * 12 11 9 14 14 C 1.53198 * 109.31539 * 181.37204 * 13 12 11 15 15 N 1.46921 * 108.77287 * 305.36582 * 14 13 12 16 16 C 1.36943 * 120.62829 * 233.58363 * 15 14 13 17 17 H 1.07999 * 120.00088 * 29.31689 * 16 15 14 18 18 C 1.38813 * 119.99794 * 209.31821 * 16 15 14 19 19 N 1.31623 * 120.00093 * 24.39579 * 18 16 15 20 20 Si 1.86804 * 119.99827 * 204.12042 * 18 16 15 21 21 H 1.48493 * 109.47027 * 180.27338 * 20 18 16 22 22 H 1.48498 * 109.46936 * 300.27465 * 20 18 16 23 23 H 1.48503 * 109.47150 * 60.27289 * 20 18 16 24 24 C 1.46924 * 118.74374 * 53.85669 * 15 14 13 25 25 C 1.53043 * 109.45228 * 275.06329 * 12 11 9 26 26 H 1.08991 * 109.47017 * 182.30737 * 1 2 3 27 27 H 1.09000 * 109.46723 * 302.30801 * 1 2 3 28 28 H 1.08994 * 109.46705 * 62.30605 * 1 2 3 29 29 H 1.08997 * 110.37451 * 200.65418 * 5 4 2 30 30 H 1.09006 * 110.36915 * 78.31869 * 5 4 2 31 31 H 1.09002 * 110.50992 * 265.32939 * 6 5 4 32 32 H 1.09003 * 110.51255 * 142.62186 * 6 5 4 33 33 H 0.97007 * 120.00244 * 0.02562 * 11 9 7 34 34 H 1.08998 * 109.46361 * 35.03111 * 12 11 9 35 35 H 1.09004 * 109.50100 * 61.41925 * 13 12 11 36 36 H 1.08998 * 109.49664 * 301.32304 * 13 12 11 37 37 H 1.09000 * 109.58507 * 185.57565 * 14 13 12 38 38 H 1.09000 * 109.69879 * 65.22198 * 14 13 12 39 39 H 0.96990 * 119.99600 * 5.50037 * 19 18 16 40 40 H 1.09008 * 109.58269 * 65.92802 * 24 15 14 41 41 H 1.08994 * 109.59247 * 186.34879 * 24 15 14 42 42 H 1.09003 * 109.49885 * 298.57505 * 25 12 11 43 43 H 1.09002 * 109.49137 * 58.63277 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 8 2.0328 -0.7237 1.1442 5 6 3.3874 -1.0873 0.7994 6 6 3.3178 -1.5057 -0.6860 7 6 2.0678 -0.7740 -1.2240 8 1 1.3286 -1.4918 -1.5795 9 6 2.4482 0.1801 -2.3267 10 8 2.2445 1.3687 -2.1973 11 7 3.0148 -0.2873 -3.4566 12 6 3.3842 0.6402 -4.5288 13 6 4.5097 0.0290 -5.3665 14 6 4.9167 1.0158 -6.4654 15 7 3.7216 1.3835 -7.2369 16 6 3.7028 1.2504 -8.5998 17 1 4.2999 0.4869 -9.0761 18 6 2.9163 2.0970 -9.3689 19 7 2.5795 3.2827 -8.9073 20 14 2.3422 1.5564 -11.0624 21 1 1.5280 2.6356 -11.6769 22 1 3.5224 1.2777 -11.9195 23 1 1.5199 0.3262 -10.9370 24 6 2.5493 1.9024 -6.5193 25 6 2.1670 0.9005 -5.4193 26 1 -0.3633 -1.0268 0.0414 27 1 -0.3633 0.5493 0.8686 28 1 -0.3632 0.4776 -0.9099 29 1 3.7242 -1.9224 1.4135 30 1 4.0526 -0.2325 0.9220 31 1 3.1955 -2.5853 -0.7733 32 1 4.2109 -1.1773 -1.2176 33 1 3.1775 -1.2380 -3.5603 34 1 3.7241 1.5804 -4.0946 35 1 4.1623 -0.8988 -5.8211 36 1 5.3679 -0.1777 -4.7272 37 1 5.6475 0.5475 -7.1247 38 1 5.3501 1.9089 -6.0152 39 1 2.9452 3.5972 -8.0659 40 1 2.7921 2.8660 -6.0713 41 1 1.7177 2.0194 -7.2141 42 1 1.8416 -0.0355 -5.8734 43 1 1.3576 1.3135 -4.8173 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094177512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:08 Heat of formation + Delta-G solvation = -75.308888 kcal Electronic energy + Delta-G solvation = -23040.500724 eV Core-core repulsion = 19699.567875 eV Total energy + Delta-G solvation = -3340.932848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.64680 -38.87949 -37.40153 -34.68652 -32.96582 -32.11161 -31.61107 -30.20171 -29.30141 -26.73568 -24.82597 -22.85223 -22.42346 -22.30100 -21.37015 -20.11690 -19.30008 -17.74244 -17.25875 -16.21861 -16.20084 -15.61105 -15.27090 -14.72981 -14.31369 -14.00135 -13.88052 -13.68800 -13.53624 -13.35897 -12.87660 -12.69612 -12.53197 -12.43062 -12.01239 -11.72049 -11.58063 -11.33451 -11.32285 -11.05646 -10.77547 -10.69137 -10.48664 -10.27427 -10.11127 -10.02394 -10.00844 -9.66573 -9.30388 -8.82352 -8.39068 -6.91449 -6.08613 -3.27183 2.61642 3.14922 3.48154 3.51269 3.62608 3.69722 4.23362 4.37952 4.54534 4.57628 4.75682 4.95853 4.98653 5.16737 5.18320 5.25835 5.29270 5.36435 5.38838 5.46137 5.49138 5.58099 5.64532 5.68583 5.86149 5.90029 5.98013 6.08588 6.18954 6.22358 6.40681 6.48808 6.57285 6.60871 6.73623 6.76150 7.02749 7.16857 7.56817 7.98677 8.25293 8.55922 9.09183 9.82132 10.26844 11.19878 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035796 B = 0.003526 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.016153 B = 7938.045001 C = 8293.682833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.089 0.911 4 O -0.372 6.372 5 C 0.047 3.953 6 C -0.147 4.147 7 C -0.144 4.144 8 H 0.110 0.890 9 C 0.519 3.481 10 O -0.536 6.536 11 N -0.722 5.722 12 C 0.151 3.849 13 C -0.138 4.138 14 C 0.150 3.850 15 N -0.599 5.599 16 C -0.354 4.354 17 H 0.056 0.944 18 C -0.023 4.023 19 N -0.914 5.914 20 Si 1.065 2.935 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.293 1.293 24 C 0.154 3.846 25 C -0.141 4.141 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.396 0.604 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.269 0.731 40 H 0.020 0.980 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 -11.347 16.743 20.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.107 0.893 4 O -0.292 6.292 5 C -0.030 4.030 6 C -0.185 4.185 7 C -0.165 4.165 8 H 0.128 0.872 9 C 0.304 3.696 10 O -0.413 6.413 11 N -0.372 5.372 12 C 0.047 3.953 13 C -0.178 4.178 14 C 0.023 3.977 15 N -0.323 5.323 16 C -0.483 4.483 17 H 0.073 0.927 18 C -0.225 4.225 19 N -0.554 5.554 20 Si 0.895 3.105 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.028 3.972 25 C -0.182 4.182 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.523 -10.079 15.679 18.646 hybrid contribution 1.242 -1.028 1.019 1.907 sum 0.719 -11.106 16.698 20.067 Atomic orbital electron populations 1.21783 0.92706 1.02621 1.03032 1.22918 0.95667 0.96120 0.82490 0.89298 1.89131 1.26866 1.74833 1.38330 1.23370 0.85073 1.00109 0.94490 1.22970 0.97350 1.01324 0.96896 1.22794 0.99527 0.98304 0.95916 0.87208 1.20246 0.77380 0.89061 0.82870 1.90715 1.53716 1.16610 1.80271 1.46307 1.62487 1.11237 1.17151 1.21025 0.95562 0.92683 0.86001 1.22322 0.96688 1.00703 0.98093 1.20835 0.90314 0.94624 0.91927 1.44169 1.08421 1.76546 1.03186 1.19957 1.31840 1.14683 0.81789 0.92654 1.25896 0.99637 0.93018 1.03975 1.70780 1.46479 1.15389 1.22716 0.83520 0.76385 0.75334 0.75252 1.21050 1.21958 1.22056 1.21004 0.91442 0.92594 0.92181 1.22513 0.96522 1.01373 0.97769 0.91958 0.91606 0.90728 0.88800 0.92064 0.89652 0.89905 0.77074 0.90057 0.91739 0.92542 0.92171 0.96389 0.91953 0.96226 0.90110 0.92291 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.52 37.16 0.35 -1.11 16 2 C 0.09 0.99 3.25 -25.95 -0.08 0.90 16 3 H 0.09 1.20 6.96 -51.93 -0.36 0.83 16 4 O -0.37 -4.28 11.34 -35.23 -0.40 -4.68 16 5 C 0.05 0.41 7.63 37.93 0.29 0.70 16 6 C -0.15 -1.19 6.66 -25.16 -0.17 -1.36 16 7 C -0.14 -1.49 3.05 -90.20 -0.28 -1.76 16 8 H 0.11 0.98 7.88 -51.93 -0.41 0.57 16 9 C 0.52 7.17 6.94 -10.99 -0.08 7.10 16 10 O -0.54 -9.62 15.15 5.55 0.08 -9.53 16 11 N -0.72 -9.47 4.96 -53.77 -0.27 -9.73 16 12 C 0.15 2.52 2.41 -67.89 -0.16 2.35 16 13 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 14 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 15 N -0.60 -14.83 2.83 -172.06 -0.49 -15.31 16 16 C -0.35 -9.77 9.48 -15.06 -0.14 -9.91 16 17 H 0.06 1.52 7.94 -52.49 -0.42 1.11 16 18 C -0.02 -0.64 4.69 -17.43 -0.08 -0.72 16 19 N -0.91 -27.44 12.46 55.49 0.69 -26.75 16 20 Si 1.07 25.04 29.98 -169.99 -5.10 19.94 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.15 3.66 4.72 -3.49 -0.02 3.64 16 25 C -0.14 -2.74 5.67 -26.39 -0.15 -2.89 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.66 7.68 -51.93 -0.40 0.27 16 33 H 0.40 4.04 8.59 -40.82 -0.35 3.69 16 34 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.27 8.19 6.70 -40.82 -0.27 7.91 16 40 H 0.02 0.49 7.85 -51.92 -0.41 0.08 16 41 H 0.08 2.15 6.38 -51.93 -0.33 1.81 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -32.32 339.19 -8.25 -40.57 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.20 Total: 2.80 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.69 Total: -2.42 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.06 Total: -51.79 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.32 Total: -14.21 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.10 Total: 19.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.32 -8.25 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094177512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.740 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds