Wall clock time and date at job start Tue Mar 31 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47133 * 2 1 4 4 O 1.21286 * 119.99788 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00252 * 180.02562 * 3 2 1 6 6 C 1.47469 * 125.62758 * 0.02562 * 5 3 2 7 7 C 1.54907 * 104.81187 * 204.05310 * 6 5 3 8 8 C 1.55152 * 101.61567 * 323.04359 * 7 6 5 9 9 H 1.08997 * 110.72288 * 277.11585 * 8 7 6 10 10 C 1.50706 * 110.71621 * 153.84615 * 8 7 6 11 11 O 1.21274 * 120.00179 * 266.28332 * 10 8 7 12 12 N 1.34775 * 119.99862 * 86.29018 * 10 8 7 13 13 C 1.46505 * 120.00283 * 5.39432 * 12 10 8 14 14 C 1.53000 * 109.47225 * 93.43618 * 13 12 10 15 15 C 1.46504 * 119.99972 * 185.39712 * 12 10 8 16 16 C 1.50700 * 109.47113 * 89.99857 * 15 12 10 17 17 H 1.07998 * 119.99828 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99985 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00298 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99985 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47287 * 59.99868 * 20 18 16 22 22 H 1.48507 * 109.47004 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46946 * 299.99692 * 20 18 16 24 24 C 1.47023 * 125.65104 * 179.97438 * 5 3 2 25 25 H 1.09004 * 109.47169 * 60.00291 * 1 2 3 26 26 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47312 * 300.00406 * 1 2 3 28 28 H 1.09001 * 109.47312 * 239.99594 * 2 1 3 29 29 H 1.09004 * 109.47169 * 119.99709 * 2 1 3 30 30 H 1.09002 * 110.34817 * 85.23583 * 6 5 3 31 31 H 1.08995 * 110.40750 * 322.90293 * 6 5 3 32 32 H 1.09002 * 111.00315 * 204.95437 * 7 6 5 33 33 H 1.08995 * 111.00572 * 81.14280 * 7 6 5 34 34 H 1.09003 * 109.47153 * 213.43939 * 13 12 10 35 35 H 1.08999 * 109.46853 * 333.43559 * 13 12 10 36 36 H 1.09001 * 109.46550 * 59.99961 * 14 13 12 37 37 H 1.08994 * 109.47236 * 180.02562 * 14 13 12 38 38 H 1.08999 * 109.46723 * 300.00646 * 14 13 12 39 39 H 1.09003 * 109.47190 * 209.99796 * 15 12 10 40 40 H 1.08997 * 109.46722 * 329.99877 * 15 12 10 41 41 H 0.96999 * 120.00422 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88275 * 59.57443 * 24 5 3 43 43 H 1.08998 * 109.88240 * 298.40797 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 4.4210 0.6456 -0.0017 7 6 5.6542 1.3573 0.6085 8 6 5.5100 2.7876 0.0247 9 1 5.9227 2.8363 -0.9829 10 6 6.1730 3.7995 0.9234 11 8 5.5226 4.3799 1.7666 12 7 7.4887 4.0596 0.7900 13 6 8.2491 3.4485 -0.3031 14 6 8.2773 4.4014 -1.4998 15 6 8.1585 4.9534 1.7380 16 6 8.6921 4.1492 2.8954 17 1 8.5465 3.0794 2.9223 18 6 9.3653 4.7793 3.9204 19 7 9.5423 6.0821 3.8879 20 14 10.0262 3.7825 5.3555 21 1 10.9965 2.7764 4.8542 22 1 10.7042 4.6887 6.3170 23 1 8.9026 3.0903 6.0364 24 6 3.9815 2.9983 -0.0011 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.6351 0.3225 -1.0204 31 1 4.1310 -0.2057 0.6141 32 1 6.5803 0.8902 0.2736 33 1 5.5979 1.3720 1.6969 34 1 9.2685 3.2520 0.0290 35 1 7.7753 2.5116 -0.5958 36 1 8.7510 5.3384 -1.2070 37 1 8.8426 3.9466 -2.3131 38 1 7.2578 4.5980 -1.8317 39 1 8.9830 5.4616 1.2379 40 1 7.4464 5.6919 2.1063 41 1 10.0162 6.5253 4.6089 42 1 3.6691 3.5545 0.8827 43 1 3.6970 3.5407 -0.9028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161817082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:22 Heat of formation + Delta-G solvation = -78.887477 kcal Electronic energy + Delta-G solvation = -22883.037324 eV Core-core repulsion = 19541.949297 eV Total energy + Delta-G solvation = -3341.088027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.37435 -39.09877 -37.01511 -35.36137 -33.07902 -32.82823 -31.58319 -30.14998 -29.19783 -27.30805 -25.33926 -23.35573 -23.02120 -22.72979 -21.12783 -19.20502 -18.32872 -17.23917 -17.20698 -16.42661 -15.89933 -15.42896 -15.40270 -14.61147 -14.40927 -14.30529 -13.66501 -13.41076 -13.32396 -13.05203 -12.90815 -12.57227 -12.43442 -12.19252 -12.08505 -11.88103 -11.72139 -11.62682 -11.35914 -11.29069 -11.14689 -10.94129 -10.82675 -10.74614 -10.53682 -10.16599 -9.86387 -9.68948 -8.97731 -8.64603 -8.46107 -7.71168 -6.07065 -4.12493 2.61060 2.89128 3.25401 3.29023 3.34208 3.37045 3.85125 4.31683 4.41136 4.44810 4.75540 4.80643 4.89746 4.93523 5.12494 5.16638 5.23002 5.27362 5.29207 5.36828 5.43620 5.58183 5.59832 5.70616 5.72510 5.73916 5.86848 6.00434 6.02657 6.04297 6.18592 6.20405 6.24969 6.46351 7.03539 7.42726 7.46567 7.50479 7.88949 8.13738 8.19999 8.37003 8.85383 9.02901 9.52740 11.00979 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.004078 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.695024 B = 6863.657619 C = 7424.192497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.541 6.541 5 N -0.619 5.619 6 C 0.101 3.899 7 C -0.118 4.118 8 C -0.125 4.125 9 H 0.101 0.899 10 C 0.517 3.483 11 O -0.537 6.537 12 N -0.594 5.594 13 C 0.105 3.895 14 C -0.170 4.170 15 C 0.246 3.754 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.118 3.882 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.032 0.968 40 H 0.044 0.956 41 H 0.264 0.736 42 H 0.093 0.907 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 -14.176 -12.482 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.418 6.418 5 N -0.354 5.354 6 C -0.022 4.022 7 C -0.157 4.157 8 C -0.147 4.147 9 H 0.119 0.881 10 C 0.302 3.698 11 O -0.414 6.414 12 N -0.325 5.325 13 C -0.019 4.019 14 C -0.228 4.228 15 C 0.127 3.873 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.005 4.005 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.331 -13.199 -11.918 19.638 hybrid contribution 0.744 -0.526 0.761 1.187 sum -7.587 -13.725 -11.157 19.246 Atomic orbital electron populations 1.21538 0.93042 1.01449 1.03442 1.21609 0.98486 0.93633 1.04150 1.20454 0.80291 0.91910 0.76067 1.90714 1.54340 1.46787 1.49958 1.48564 1.05199 1.08173 1.73432 1.22387 0.87171 0.91682 1.00953 1.22740 0.97817 0.92936 1.02168 1.22382 0.95611 0.96045 1.00690 0.88060 1.19853 0.82588 0.82992 0.84362 1.90677 1.63208 1.51106 1.36442 1.48208 1.07751 1.47514 1.29028 1.21454 0.98052 0.95230 0.87188 1.22218 1.01630 1.01090 0.97883 1.19281 0.92447 0.89086 0.86514 1.21384 1.35713 0.94245 1.05446 0.92523 1.24935 0.96067 0.94938 0.98108 1.69918 1.41786 1.08174 1.33353 0.86568 0.79003 0.79815 0.82076 1.20232 1.21150 1.20205 1.21849 0.90247 0.84613 1.03753 0.92014 0.92127 0.91910 0.89086 0.88975 0.90954 0.90233 0.89015 0.89524 0.90030 0.91544 0.91931 0.92160 0.93063 0.94978 0.93783 0.92611 0.88925 0.91355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 37.16 0.34 -0.88 16 2 C -0.14 -1.23 5.42 -27.89 -0.15 -1.38 16 3 C 0.52 7.14 7.85 -10.99 -0.09 7.06 16 4 O -0.54 -9.67 16.31 5.55 0.09 -9.58 16 5 N -0.62 -8.03 3.33 -170.49 -0.57 -8.60 16 6 C 0.10 0.93 6.69 -2.51 -0.02 0.92 16 7 C -0.12 -1.37 6.34 -24.59 -0.16 -1.53 16 8 C -0.13 -1.77 2.32 -89.94 -0.21 -1.98 16 9 H 0.10 1.17 6.66 -51.93 -0.35 0.82 16 10 C 0.52 10.32 6.88 -10.98 -0.08 10.25 16 11 O -0.54 -13.39 15.08 5.56 0.08 -13.30 16 12 N -0.59 -11.98 2.46 -175.05 -0.43 -12.41 16 13 C 0.10 1.56 5.80 -4.04 -0.02 1.54 16 14 C -0.17 -2.18 10.21 37.16 0.38 -1.80 16 15 C 0.25 6.29 5.22 -5.19 -0.03 6.26 16 16 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 17 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.12 1.80 6.41 -3.06 -0.02 1.78 16 25 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.68 7.85 -51.93 -0.41 0.27 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.58 7.48 -51.93 -0.39 0.19 16 32 H 0.09 0.85 7.56 -51.93 -0.39 0.46 16 33 H 0.09 1.22 8.04 -51.93 -0.42 0.80 16 34 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.07 0.78 5.51 -51.93 -0.29 0.49 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.63 8.02 -51.93 -0.42 0.22 16 39 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.04 1.29 7.35 -51.93 -0.38 0.91 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.09 1.76 6.73 -51.93 -0.35 1.41 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.05 15.07 5.29 5.29 Total: -1.00 -35.10 351.05 -7.43 -42.52 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.15 Total: -1.70 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.46 Total: 6.91 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.26 Total: -46.62 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.10 -7.43 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161817082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.363 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds