Wall clock time and date at job start Tue Mar 31 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47133 * 2 1 4 4 O 1.21286 * 119.99788 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00252 * 180.02562 * 3 2 1 6 6 C 1.47469 * 125.62758 * 0.02562 * 5 3 2 7 7 C 1.54907 * 104.81187 * 204.05310 * 6 5 3 8 8 C 1.55152 * 101.61567 * 323.04359 * 7 6 5 9 9 H 1.08997 * 110.72288 * 277.11585 * 8 7 6 10 10 C 1.50706 * 110.71621 * 153.84615 * 8 7 6 11 11 O 1.21274 * 120.00179 * 266.28332 * 10 8 7 12 12 N 1.34775 * 119.99862 * 86.29018 * 10 8 7 13 13 C 1.46505 * 120.00283 * 5.39432 * 12 10 8 14 14 C 1.53000 * 109.47225 * 93.43618 * 13 12 10 15 15 C 1.46504 * 119.99972 * 185.39712 * 12 10 8 16 16 C 1.50700 * 109.47113 * 89.99857 * 15 12 10 17 17 H 1.07998 * 119.99828 * 359.97438 * 16 15 12 18 18 C 1.37871 * 119.99985 * 180.02562 * 16 15 12 19 19 N 1.31512 * 120.00298 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99985 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47287 * 59.99868 * 20 18 16 22 22 H 1.48507 * 109.47004 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46946 * 299.99692 * 20 18 16 24 24 C 1.47023 * 125.65104 * 179.97438 * 5 3 2 25 25 H 1.09004 * 109.47169 * 60.00291 * 1 2 3 26 26 H 1.09002 * 109.47101 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47312 * 300.00406 * 1 2 3 28 28 H 1.09001 * 109.47312 * 239.99594 * 2 1 3 29 29 H 1.09004 * 109.47169 * 119.99709 * 2 1 3 30 30 H 1.09002 * 110.34817 * 85.23583 * 6 5 3 31 31 H 1.08995 * 110.40750 * 322.90293 * 6 5 3 32 32 H 1.09002 * 111.00315 * 204.95437 * 7 6 5 33 33 H 1.08995 * 111.00572 * 81.14280 * 7 6 5 34 34 H 1.09003 * 109.47153 * 213.43939 * 13 12 10 35 35 H 1.08999 * 109.46853 * 333.43559 * 13 12 10 36 36 H 1.09001 * 109.46550 * 59.99961 * 14 13 12 37 37 H 1.08994 * 109.47236 * 180.02562 * 14 13 12 38 38 H 1.08999 * 109.46723 * 300.00646 * 14 13 12 39 39 H 1.09003 * 109.47190 * 209.99796 * 15 12 10 40 40 H 1.08997 * 109.46722 * 329.99877 * 15 12 10 41 41 H 0.96999 * 120.00422 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88275 * 59.57443 * 24 5 3 43 43 H 1.08998 * 109.88240 * 298.40797 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 4.4210 0.6456 -0.0017 7 6 5.6542 1.3573 0.6085 8 6 5.5100 2.7876 0.0247 9 1 5.9227 2.8363 -0.9829 10 6 6.1730 3.7995 0.9234 11 8 5.5226 4.3799 1.7666 12 7 7.4887 4.0596 0.7900 13 6 8.2491 3.4485 -0.3031 14 6 8.2773 4.4014 -1.4998 15 6 8.1585 4.9534 1.7380 16 6 8.6921 4.1492 2.8954 17 1 8.5465 3.0794 2.9223 18 6 9.3653 4.7793 3.9204 19 7 9.5423 6.0821 3.8879 20 14 10.0262 3.7825 5.3555 21 1 10.9965 2.7764 4.8542 22 1 10.7042 4.6887 6.3170 23 1 8.9026 3.0903 6.0364 24 6 3.9815 2.9983 -0.0011 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.6351 0.3225 -1.0204 31 1 4.1310 -0.2057 0.6141 32 1 6.5803 0.8902 0.2736 33 1 5.5979 1.3720 1.6969 34 1 9.2685 3.2520 0.0290 35 1 7.7753 2.5116 -0.5958 36 1 8.7510 5.3384 -1.2070 37 1 8.8426 3.9466 -2.3131 38 1 7.2578 4.5980 -1.8317 39 1 8.9830 5.4616 1.2379 40 1 7.4464 5.6919 2.1063 41 1 10.0162 6.5253 4.6089 42 1 3.6691 3.5545 0.8827 43 1 3.6970 3.5407 -0.9028 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161817082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:22 Heat of formation + Delta-G solvation = -103.356913 kcal Electronic energy + Delta-G solvation = -22884.098398 eV Core-core repulsion = 19541.949297 eV Total energy + Delta-G solvation = -3342.149102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58019 -40.45287 -38.19790 -37.00117 -34.93047 -33.88552 -32.68396 -31.58932 -30.21916 -29.13342 -26.53384 -24.98676 -24.27106 -23.67126 -22.43453 -20.15480 -19.76919 -18.65934 -18.45886 -18.22673 -17.19512 -16.83397 -16.47021 -16.22101 -15.98764 -15.48044 -14.69918 -14.68988 -14.55356 -14.40482 -14.15864 -13.84638 -13.60316 -13.30806 -13.26752 -13.12958 -13.07137 -12.87076 -12.62222 -12.55992 -12.51632 -12.30383 -12.16040 -12.04577 -11.86396 -11.79752 -11.73433 -10.94134 -10.64638 -10.61075 -9.70267 -9.45805 -8.22656 -6.38119 1.36544 1.41263 1.48273 1.61021 1.73634 1.87823 2.31601 2.46007 3.07194 3.34118 3.46199 3.70413 3.79651 4.06370 4.17492 4.22771 4.24826 4.26664 4.32614 4.44676 4.59417 4.63637 4.69804 4.78812 4.85505 4.90326 4.98489 5.00184 5.02560 5.05862 5.07843 5.14976 5.20928 5.23055 5.37533 5.41419 5.57615 5.85405 6.05397 6.50681 6.69463 6.78377 7.13196 7.27157 7.45174 8.84553 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.004078 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.695024 B = 6863.657619 C = 7424.192497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.511 3.489 4 O -0.599 6.599 5 N -0.620 5.620 6 C 0.104 3.896 7 C -0.117 4.117 8 C -0.108 4.108 9 H 0.143 0.857 10 C 0.506 3.494 11 O -0.602 6.602 12 N -0.597 5.597 13 C 0.097 3.903 14 C -0.164 4.164 15 C 0.261 3.739 16 C -0.542 4.542 17 H 0.060 0.940 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.969 3.031 21 H -0.255 1.255 22 H -0.282 1.282 23 H -0.278 1.278 24 C 0.119 3.881 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.038 0.962 28 H 0.128 0.872 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.128 0.872 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.033 0.967 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.022 0.978 40 H -0.009 1.009 41 H 0.266 0.734 42 H 0.041 0.959 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 -18.698 -14.372 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.303 3.697 4 O -0.480 6.480 5 N -0.354 5.354 6 C -0.017 4.017 7 C -0.155 4.155 8 C -0.130 4.130 9 H 0.160 0.840 10 C 0.295 3.705 11 O -0.484 6.484 12 N -0.327 5.327 13 C -0.025 4.025 14 C -0.222 4.222 15 C 0.140 3.860 16 C -0.581 4.581 17 H 0.078 0.922 18 C -0.194 4.194 19 N -0.571 5.571 20 Si 0.793 3.207 21 H -0.179 1.179 22 H -0.207 1.207 23 H -0.204 1.204 24 C -0.005 4.005 25 H 0.066 0.934 26 H 0.110 0.890 27 H 0.057 0.943 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.147 0.853 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.009 0.991 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.262 -17.784 -13.861 23.689 hybrid contribution 0.407 0.948 1.332 1.685 sum -6.855 -16.836 -12.530 22.078 Atomic orbital electron populations 1.21561 0.93555 1.02828 1.01639 1.21695 0.97948 0.90211 1.06858 1.21526 0.79960 0.93528 0.74709 1.90688 1.55830 1.48931 1.52543 1.48722 1.05987 1.07948 1.72723 1.22718 0.84347 0.90829 1.03783 1.22847 1.01036 0.91239 1.00394 1.22335 0.93932 0.95573 1.01155 0.83975 1.20935 0.82170 0.83115 0.84296 1.90649 1.64652 1.53613 1.39510 1.48225 1.08338 1.46766 1.29407 1.21850 0.97477 0.97238 0.85900 1.22180 1.02421 0.99613 0.98025 1.18694 0.90800 0.89055 0.87494 1.21703 1.35598 0.94494 1.06295 0.92202 1.25914 0.96336 0.96035 1.01109 1.70060 1.42609 1.10005 1.34412 0.85449 0.78495 0.78519 0.78238 1.17916 1.20707 1.20352 1.21620 0.91403 0.86089 1.01433 0.93425 0.88982 0.94278 0.85434 0.86669 0.86691 0.87392 0.85347 0.92789 0.90721 0.86966 0.94737 0.88205 0.92455 0.96044 0.99136 0.92474 0.94095 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.20 71.98 0.66 -1.56 16 2 C -0.13 -1.82 5.42 29.85 0.16 -1.66 16 3 C 0.51 13.37 7.85 87.66 0.69 14.05 16 4 O -0.60 -22.18 16.31 -3.05 -0.05 -22.23 16 5 N -0.62 -14.89 3.33 -811.69 -2.70 -17.59 16 6 C 0.10 1.40 6.69 86.85 0.58 1.98 16 7 C -0.12 -2.30 6.34 31.98 0.20 -2.10 16 8 C -0.11 -2.87 2.32 -10.35 -0.02 -2.89 16 9 H 0.14 2.63 6.66 -2.39 -0.02 2.61 16 10 C 0.51 20.82 6.88 87.66 0.60 21.42 16 11 O -0.60 -32.43 15.08 -3.01 -0.05 -32.47 16 12 N -0.60 -24.49 2.46 -826.13 -2.03 -26.51 16 13 C 0.10 2.66 5.80 86.38 0.50 3.16 16 14 C -0.16 -3.83 10.21 71.98 0.74 -3.10 16 15 C 0.26 14.11 5.22 85.63 0.45 14.56 16 16 C -0.54 -30.85 9.39 25.60 0.24 -30.61 16 17 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 18 C 0.00 0.28 5.46 84.65 0.46 0.74 16 19 N -0.93 -56.87 13.29 21.44 0.28 -56.58 16 20 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 21 H -0.25 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 C 0.12 3.65 6.41 86.73 0.56 4.20 16 25 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.04 0.80 8.10 -2.39 -0.02 0.78 16 28 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.12 1.17 7.85 -2.39 -0.02 1.15 16 30 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.93 7.48 -2.39 -0.02 0.92 16 32 H 0.13 1.62 7.56 -2.39 -0.02 1.60 16 33 H 0.05 1.44 8.04 -2.39 -0.02 1.42 16 34 H 0.07 2.18 8.10 -2.39 -0.02 2.16 16 35 H 0.11 2.05 5.51 -2.39 -0.01 2.04 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.27 8.02 -2.39 -0.02 1.25 16 39 H 0.02 1.18 8.07 -2.39 -0.02 1.17 16 40 H -0.01 -0.61 7.35 -2.39 -0.02 -0.63 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.04 1.69 6.73 -2.39 -0.02 1.68 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -87.10 351.05 4.28 -82.82 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.98 Total: 7.95 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 5.82 Total: 18.22 kcal Atomic # 7 Polarization: -96.25 SS G_CDS: -4.44 Total: -100.69 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -0.10 Total: -54.70 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -87.10 4.28 -82.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161817082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.537 kcal (2) G-P(sol) polarization free energy of solvation -87.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds