Wall clock time and date at job start Tue Mar 31 2020 06:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50694 * 109.47258 * 2 1 4 4 O 1.21287 * 120.00252 * 359.97438 * 3 2 1 5 5 N 1.34779 * 120.00068 * 180.02562 * 3 2 1 6 6 C 1.47421 * 125.64565 * 0.02562 * 5 3 2 7 7 C 1.54911 * 104.83220 * 155.83774 * 6 5 3 8 8 C 1.55159 * 101.58177 * 37.00730 * 7 6 5 9 9 H 1.08994 * 110.72204 * 83.03843 * 8 7 6 10 10 C 1.50700 * 110.71957 * 206.13651 * 8 7 6 11 11 O 1.21283 * 119.99868 * 85.50559 * 10 8 7 12 12 N 1.34768 * 120.00189 * 265.51051 * 10 8 7 13 13 C 1.46499 * 120.00060 * 5.04702 * 12 10 8 14 14 C 1.53004 * 109.47302 * 266.96053 * 13 12 10 15 15 C 1.46497 * 120.00492 * 185.05161 * 12 10 8 16 16 C 1.50702 * 109.47095 * 269.99686 * 15 12 10 17 17 H 1.08002 * 120.00331 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00275 * 179.97438 * 16 15 12 19 19 N 1.31516 * 120.00112 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00383 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47178 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47598 * 120.00152 * 20 18 16 23 23 H 1.48500 * 109.47175 * 240.00303 * 20 18 16 24 24 C 1.47019 * 125.64900 * 179.97438 * 5 3 2 25 25 H 1.08995 * 109.47239 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46989 * 300.00377 * 1 2 3 27 27 H 1.09002 * 109.47037 * 59.99716 * 1 2 3 28 28 H 1.09001 * 109.46989 * 239.99623 * 2 1 3 29 29 H 1.09002 * 109.47037 * 120.00284 * 2 1 3 30 30 H 1.09002 * 110.37087 * 36.99409 * 6 5 3 31 31 H 1.09001 * 110.45970 * 274.71939 * 6 5 3 32 32 H 1.08996 * 111.00367 * 278.92998 * 7 6 5 33 33 H 1.08995 * 111.00614 * 155.07987 * 7 6 5 34 34 H 1.09004 * 109.47596 * 146.95988 * 13 12 10 35 35 H 1.09001 * 109.47261 * 26.95576 * 13 12 10 36 36 H 1.08995 * 109.46945 * 59.99502 * 14 13 12 37 37 H 1.08997 * 109.47039 * 179.97438 * 14 13 12 38 38 H 1.09004 * 109.46418 * 299.99455 * 14 13 12 39 39 H 1.08999 * 109.47230 * 29.99511 * 15 12 10 40 40 H 1.08999 * 109.47767 * 149.99839 * 15 12 10 41 41 H 0.97001 * 120.00556 * 179.97438 * 19 18 16 42 42 H 1.09005 * 109.87985 * 61.67896 * 24 5 3 43 43 H 1.09002 * 109.88719 * 300.51185 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.4211 0.6462 -0.0017 7 6 5.6530 1.3576 -0.6148 8 6 5.5102 2.7875 -0.0296 9 1 5.9278 2.8361 0.9760 10 6 6.1712 3.8001 -0.9289 11 8 5.5595 4.2711 -1.8643 12 7 7.4420 4.1822 -0.6938 13 6 8.2176 3.5338 0.3665 14 6 8.0778 4.3342 1.6630 15 6 8.0479 5.2460 -1.4983 16 6 8.7190 4.6427 -2.7052 17 1 8.6969 3.5737 -2.8575 18 6 9.3614 5.4554 -3.6151 19 7 9.3889 6.7571 -3.4296 20 14 10.1927 4.7077 -5.1115 21 1 10.0201 3.2329 -5.0884 22 1 9.5789 5.2592 -6.3461 23 1 11.6407 5.0364 -5.0893 24 6 3.9816 2.9981 -0.0011 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 4.1293 -0.2050 -0.6169 31 1 4.6383 0.3211 1.0158 32 1 5.5936 1.3731 -1.7030 33 1 6.5797 0.8902 -0.2823 34 1 9.2674 3.4934 0.0760 35 1 7.8445 2.5216 0.5225 36 1 7.0281 4.3747 1.9536 37 1 8.6545 3.8515 2.4520 38 1 8.4510 5.3464 1.5070 39 1 7.2741 5.9418 -1.8228 40 1 8.7871 5.7783 -0.8997 41 1 9.8411 7.3289 -4.0695 42 1 3.6990 3.5405 0.9012 43 1 3.6676 3.5545 -0.8843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161817224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:26 Heat of formation + Delta-G solvation = -78.736054 kcal Electronic energy + Delta-G solvation = -22861.332466 eV Core-core repulsion = 19520.251005 eV Total energy + Delta-G solvation = -3341.081461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38539 -39.10220 -37.02504 -35.35600 -33.08937 -32.82291 -31.58305 -30.13995 -29.22428 -27.29628 -25.34778 -23.35264 -23.04795 -22.75107 -21.09945 -19.22150 -18.36668 -17.25400 -17.21076 -16.40932 -15.91366 -15.45157 -15.40348 -14.59230 -14.38837 -14.22483 -13.68268 -13.46179 -13.27628 -13.13522 -12.92503 -12.55581 -12.44010 -12.21667 -12.10764 -11.89153 -11.74168 -11.61518 -11.37036 -11.28009 -11.16376 -10.89845 -10.82934 -10.74584 -10.56446 -10.15092 -9.87772 -9.64051 -8.96496 -8.66611 -8.45334 -7.70991 -6.05869 -4.10461 2.59854 2.87514 3.24939 3.28397 3.36460 3.39786 3.85296 4.31364 4.42801 4.43527 4.76101 4.78917 4.89348 4.91993 5.11191 5.15624 5.22169 5.28076 5.28903 5.35457 5.42437 5.57354 5.59455 5.68348 5.72160 5.73174 5.85240 5.99427 6.00764 6.02583 6.16392 6.20134 6.22904 6.46055 7.03338 7.41033 7.45342 7.51210 7.90206 8.12527 8.21377 8.37302 8.87601 9.04037 9.54616 11.02328 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.003933 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.675458 B = 7118.273751 C = 7586.598238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.541 6.541 5 N -0.618 5.618 6 C 0.101 3.899 7 C -0.119 4.119 8 C -0.126 4.126 9 H 0.101 0.899 10 C 0.514 3.486 11 O -0.534 6.534 12 N -0.594 5.594 13 C 0.106 3.894 14 C -0.171 4.171 15 C 0.246 3.754 16 C -0.524 4.524 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.119 3.881 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.033 0.967 41 H 0.263 0.737 42 H 0.068 0.932 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.571 -15.543 11.866 20.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.418 6.418 5 N -0.353 5.353 6 C -0.022 4.022 7 C -0.157 4.157 8 C -0.148 4.148 9 H 0.120 0.880 10 C 0.300 3.700 11 O -0.411 6.411 12 N -0.325 5.325 13 C -0.018 4.018 14 C -0.229 4.229 15 C 0.127 3.873 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.003 4.003 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.321 -14.613 11.280 20.248 hybrid contribution 0.820 -0.333 -0.772 1.174 sum -7.501 -14.946 10.507 19.749 Atomic orbital electron populations 1.21539 0.93032 1.01457 1.03451 1.21609 0.98494 0.93613 1.04148 1.20459 0.80277 0.91919 0.76058 1.90716 1.54340 1.46778 1.49932 1.48546 1.05199 1.08136 1.73448 1.22368 0.87180 0.91667 1.00958 1.22752 0.97820 0.93005 1.02125 1.22430 0.95638 0.96016 1.00716 0.88040 1.19877 0.82328 0.82653 0.85182 1.90693 1.63829 1.56079 1.30476 1.48233 1.11643 1.38389 1.34275 1.21439 0.97867 0.95290 0.87225 1.22242 1.01471 1.01799 0.97399 1.19282 0.93521 0.84908 0.89556 1.21450 1.33786 0.93802 1.07264 0.92424 1.24941 0.96387 0.94774 0.98070 1.69939 1.43594 1.03141 1.36706 0.86448 0.78879 0.79304 0.82806 1.19831 1.20883 1.20992 1.21839 0.90177 0.84690 1.03643 0.92120 0.92006 0.91907 0.88974 0.89082 0.90260 0.90945 0.89520 0.89084 0.89954 0.91646 0.93020 0.92167 0.91909 0.94028 0.94920 0.92765 0.91320 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.20 37.16 0.34 -0.87 16 2 C -0.14 -1.21 5.43 -27.88 -0.15 -1.36 16 3 C 0.52 7.08 7.85 -10.99 -0.09 6.99 16 4 O -0.54 -9.61 16.31 5.55 0.09 -9.52 16 5 N -0.62 -7.94 3.33 -170.52 -0.57 -8.51 16 6 C 0.10 0.92 6.69 -2.53 -0.02 0.90 16 7 C -0.12 -1.35 6.35 -24.58 -0.16 -1.50 16 8 C -0.13 -1.77 2.34 -89.94 -0.21 -1.98 16 9 H 0.10 1.17 5.86 -51.93 -0.30 0.87 16 10 C 0.51 10.27 6.80 -10.99 -0.07 10.19 16 11 O -0.53 -13.33 15.31 5.55 0.09 -13.25 16 12 N -0.59 -12.01 2.46 -175.06 -0.43 -12.44 16 13 C 0.11 1.58 5.71 -4.04 -0.02 1.55 16 14 C -0.17 -2.15 10.08 37.16 0.37 -1.78 16 15 C 0.25 6.31 5.14 -5.19 -0.03 6.29 16 16 C -0.52 -14.64 9.39 -34.44 -0.32 -14.96 16 17 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 20 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.12 1.80 6.42 -3.07 -0.02 1.78 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.09 0.66 7.84 -51.93 -0.41 0.26 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.56 7.47 -51.93 -0.39 0.17 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 1.19 8.04 -51.93 -0.42 0.77 16 33 H 0.09 0.82 7.60 -51.93 -0.39 0.42 16 34 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.07 0.77 5.90 -51.93 -0.31 0.47 16 36 H 0.05 0.62 7.31 -51.93 -0.38 0.24 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 40 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 1.72 6.82 -51.93 -0.35 1.36 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -35.37 350.08 -7.40 -42.78 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.10 Total: -2.15 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.47 Total: 6.87 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -0.26 Total: -46.69 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.77 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.37 -7.40 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161817224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.959 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds