Wall clock time and date at job start Tue Mar 31 2020 06:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.52473 * 2 1 4 4 C 1.53043 * 109.49592 * 239.91774 * 2 1 3 5 5 C 1.53036 * 109.53613 * 178.68333 * 4 2 1 6 6 C 1.53195 * 109.31513 * 61.36344 * 5 4 2 7 7 N 1.46919 * 108.77729 * 305.36793 * 6 5 4 8 8 C 1.34779 * 120.63468 * 233.62919 * 7 6 5 9 9 O 1.21339 * 120.00625 * 171.35065 * 8 7 6 10 10 C 1.49453 * 119.99435 * 351.34966 * 8 7 6 11 11 O 1.21353 * 120.00286 * 353.23343 * 10 8 7 12 12 N 1.34777 * 119.99766 * 173.22910 * 10 8 7 13 13 C 1.46507 * 119.99997 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47332 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47249 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47201 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99949 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99662 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99551 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00356 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47089 * 90.00196 * 20 18 16 22 22 H 1.48504 * 109.47293 * 209.99897 * 20 18 16 23 23 H 1.48496 * 109.47448 * 330.00082 * 20 18 16 24 24 C 1.46926 * 118.74150 * 53.60444 * 7 6 5 25 25 H 1.09005 * 109.46751 * 299.91863 * 1 2 3 26 26 H 1.09001 * 109.46947 * 59.91828 * 1 2 3 27 27 H 1.08997 * 109.46946 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46003 * 58.66216 * 4 2 1 29 29 H 1.09002 * 109.45908 * 298.70535 * 4 2 1 30 30 H 1.09003 * 109.50045 * 301.41298 * 5 4 2 31 31 H 1.09001 * 109.49845 * 181.31485 * 5 4 2 32 32 H 1.09006 * 109.58583 * 65.15090 * 6 5 4 33 33 H 1.09000 * 109.59043 * 185.57321 * 6 5 4 34 34 H 0.96993 * 120.00222 * 0.02562 * 12 10 8 35 35 H 1.09004 * 109.47199 * 300.00670 * 13 12 10 36 36 H 1.09001 * 109.47136 * 59.99730 * 13 12 10 37 37 H 1.09009 * 109.46809 * 300.00206 * 14 13 12 38 38 H 1.09001 * 109.47084 * 59.99991 * 14 13 12 39 39 H 1.09009 * 109.47031 * 299.99639 * 15 14 13 40 40 H 1.09001 * 109.47437 * 59.99776 * 15 14 13 41 41 H 0.96998 * 120.00226 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.59001 * 66.18196 * 24 7 6 43 43 H 1.08997 * 109.58855 * 186.46481 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6951 -1.2660 6 6 4.1053 -1.4267 -0.0307 7 7 3.5047 -0.8292 1.1696 8 6 4.2811 -0.3856 2.1779 9 8 3.7892 0.2453 3.0903 10 6 5.7482 -0.6708 2.1724 11 8 6.2207 -1.4034 1.3282 12 7 6.5464 -0.1142 3.1048 13 6 7.9845 -0.3942 3.0997 14 6 8.6540 0.3549 4.2536 15 6 10.1558 0.0630 4.2479 16 6 10.8153 0.8003 5.3849 17 1 10.2225 1.4159 6.0452 18 6 12.1753 0.6889 5.5820 19 7 12.7508 1.3328 6.5739 20 14 13.2005 -0.3764 4.4403 21 1 13.6838 0.4429 3.2999 22 1 14.3632 -0.9233 5.1847 23 1 12.3695 -1.4957 3.9285 24 6 2.0414 -0.7238 1.2496 25 1 -0.3633 0.5126 0.8908 26 1 -0.3633 0.5151 -0.8893 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6581 -0.2246 -2.1389 29 1 1.6967 -1.7573 -1.2353 30 1 3.9159 0.3388 -1.2541 31 1 3.9334 -1.1898 -2.1671 32 1 3.8376 -2.4819 -0.0867 33 1 5.1896 -1.3247 0.0137 34 1 6.1687 0.4712 3.7797 35 1 8.1465 -1.4654 3.2197 36 1 8.4153 -0.0654 2.1540 37 1 8.4920 1.4262 4.1339 38 1 8.2231 0.0256 5.1991 39 1 10.3182 -1.0083 4.3674 40 1 10.5865 0.3925 3.3023 41 1 13.7077 1.2548 6.7124 42 1 1.6053 -1.7216 1.2981 43 1 1.7638 -0.1601 2.1402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330436133.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:35 Heat of formation + Delta-G solvation = -81.890917 kcal Electronic energy + Delta-G solvation = -22015.795702 eV Core-core repulsion = 18674.577436 eV Total energy + Delta-G solvation = -3341.218266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06472 -39.06177 -37.87977 -35.88798 -34.07000 -33.28845 -32.18513 -31.50211 -28.01524 -27.23417 -26.19881 -23.93668 -22.64094 -22.16892 -20.89803 -20.40312 -19.57613 -17.67129 -17.14013 -16.72597 -16.24702 -15.76455 -15.57410 -14.99982 -14.89028 -14.62374 -14.23981 -14.02161 -13.85459 -13.64872 -13.31392 -12.97456 -12.74041 -12.49292 -12.18982 -12.07301 -11.99141 -11.67557 -11.43172 -11.21829 -11.13494 -10.96276 -10.88654 -10.75903 -10.13338 -9.97226 -9.76525 -9.29354 -9.24839 -9.06863 -8.96278 -8.57237 -6.07530 -4.06608 1.33401 2.22734 3.10367 3.29547 3.37277 3.40588 3.41486 4.23086 4.37953 4.41703 4.42582 4.50532 4.70800 4.95452 5.05378 5.15205 5.22045 5.26071 5.33100 5.37165 5.41054 5.43865 5.54300 5.60188 5.64846 5.72441 5.77278 5.79566 5.90642 6.01349 6.09038 6.26620 6.36819 6.56497 6.72213 6.87440 7.18150 7.23371 7.31891 7.65289 7.73627 7.95687 8.48761 8.96556 9.54176 11.05696 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041368 B = 0.002718 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.684442 B =10299.023035 C =10772.690768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.068 3.932 7 N -0.584 5.584 8 C 0.509 3.491 9 O -0.522 6.522 10 C 0.503 3.497 11 O -0.519 6.519 12 N -0.688 5.688 13 C 0.111 3.889 14 C -0.115 4.115 15 C -0.010 4.010 16 C -0.523 4.523 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.902 5.902 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C 0.112 3.888 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.143 0.857 34 H 0.413 0.587 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.071 0.929 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.645 -5.187 -16.233 29.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.053 4.053 7 N -0.318 5.318 8 C 0.291 3.709 9 O -0.398 6.398 10 C 0.284 3.716 11 O -0.398 6.398 12 N -0.339 5.339 13 C -0.011 4.011 14 C -0.153 4.153 15 C -0.048 4.048 16 C -0.561 4.561 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.541 5.541 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.011 4.011 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.159 0.841 34 H 0.249 0.751 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.366 -5.339 -16.226 28.944 hybrid contribution 0.396 -0.258 -0.254 0.537 sum -22.970 -5.597 -16.480 28.819 Atomic orbital electron populations 1.21767 0.94207 1.02105 1.02198 1.21503 0.96047 1.00247 0.94801 0.90627 1.21628 0.95621 1.00760 0.97418 1.21962 0.95709 1.01549 0.98232 1.22893 1.03605 0.96534 0.82288 1.47935 1.06602 1.59219 1.18006 1.20236 0.87891 0.79929 0.82797 1.90749 1.75032 1.38146 1.35880 1.20063 0.87279 0.81636 0.82617 1.90481 1.75773 1.37112 1.36387 1.46063 1.09369 1.47721 1.30788 1.21871 0.76884 1.01237 1.01157 1.21745 0.98329 0.99549 0.95725 1.19503 0.90475 0.97250 0.97581 1.21089 0.93201 1.29104 1.12693 0.90938 1.25036 0.97951 0.95345 0.95183 1.69913 1.10988 1.42764 1.30423 0.86768 0.79973 0.81456 0.81040 1.20251 1.21366 1.18904 1.21806 0.78683 1.01130 0.99437 0.92285 0.92206 0.92427 0.91648 0.91700 0.91600 0.90413 0.91396 0.84057 0.75088 0.91023 0.91015 0.91818 0.91766 0.96239 0.96674 0.92671 0.91060 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.11 -0.77 2.87 -90.49 -0.26 -1.03 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.76 5.17 -26.69 -0.14 -0.90 16 5 C -0.14 -1.04 6.08 -26.61 -0.16 -1.20 16 6 C 0.07 0.66 5.98 -3.71 -0.02 0.64 16 7 N -0.58 -6.42 2.97 -173.28 -0.51 -6.94 16 8 C 0.51 6.83 7.73 -11.58 -0.09 6.74 16 9 O -0.52 -7.94 15.93 5.51 0.09 -7.86 16 10 C 0.50 7.17 7.74 -11.58 -0.09 7.08 16 11 O -0.52 -7.95 13.18 5.49 0.07 -7.88 16 12 N -0.69 -9.75 5.55 -60.72 -0.34 -10.09 16 13 C 0.11 1.73 5.67 -4.04 -0.02 1.71 16 14 C -0.12 -2.11 5.27 -26.74 -0.14 -2.25 16 15 C -0.01 -0.23 4.04 -27.88 -0.11 -0.34 16 16 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 17 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 18 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 20 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.26 -6.16 6.54 56.52 0.37 -5.80 16 24 C 0.11 0.99 5.73 -3.71 -0.02 0.97 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.14 1.65 4.32 -54.77 -0.24 1.42 16 34 H 0.41 5.45 7.96 -40.82 -0.33 5.12 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.02 0.44 7.20 -51.92 -0.37 0.07 16 40 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.94 7.00 -51.93 -0.36 0.58 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -31.40 344.77 -7.74 -39.14 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.20 Total: 0.67 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.15 Total: -2.18 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.08 Total: -43.88 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.16 Total: -15.74 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.40 -7.74 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330436133.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.752 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds