Wall clock time and date at job start Tue Mar 31 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49890 * 2 1 4 4 C 1.53044 * 109.49751 * 239.93227 * 2 1 3 5 5 C 1.53035 * 109.53866 * 178.68582 * 4 2 1 6 6 H 1.09002 * 109.49917 * 301.41541 * 5 4 2 7 7 O 1.42891 * 109.50292 * 181.35026 * 5 4 2 8 8 C 1.53193 * 109.31391 * 61.36327 * 5 4 2 9 9 N 1.46930 * 108.77519 * 305.36808 * 8 5 4 10 10 C 1.34779 * 120.63024 * 233.60807 * 9 8 5 11 11 O 1.21586 * 119.99989 * 174.80123 * 10 9 8 12 12 N 1.34780 * 119.99906 * 354.79637 * 10 9 8 13 13 C 1.46500 * 119.99882 * 185.14930 * 12 10 9 14 14 C 1.53005 * 109.46905 * 185.00001 * 13 12 10 15 15 C 1.50697 * 115.54779 * 275.42405 * 14 13 12 16 16 H 1.08004 * 119.99574 * 116.06041 * 15 14 13 17 17 C 1.37871 * 120.00298 * 296.05396 * 15 14 13 18 18 N 1.31515 * 120.00176 * 352.98829 * 17 15 14 19 19 Si 1.86804 * 120.00112 * 172.98749 * 17 15 14 20 20 H 1.48503 * 109.46675 * 90.00234 * 19 17 15 21 21 H 1.48496 * 109.47173 * 209.99862 * 19 17 15 22 22 H 1.48495 * 109.46914 * 330.00469 * 19 17 15 23 23 C 1.52998 * 117.49659 * 129.71944 * 14 13 12 24 24 C 1.52996 * 117.49962 * 61.09626 * 14 13 12 25 25 C 1.46921 * 118.73742 * 53.60748 * 9 8 5 26 26 H 1.09005 * 109.47097 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46907 * 60.06993 * 1 2 3 28 28 H 1.09003 * 109.47494 * 300.06914 * 1 2 3 29 29 H 1.08996 * 109.46261 * 298.70930 * 4 2 1 30 30 H 1.09005 * 109.45581 * 58.66530 * 4 2 1 31 31 H 0.96696 * 114.00652 * 179.97438 * 7 5 4 32 32 H 1.09000 * 109.58292 * 65.15234 * 8 5 4 33 33 H 1.08998 * 109.59131 * 185.58019 * 8 5 4 34 34 H 0.97000 * 119.99723 * 5.15153 * 12 10 9 35 35 H 1.08997 * 109.47348 * 304.99955 * 13 12 10 36 36 H 1.09000 * 109.47283 * 65.00264 * 13 12 10 37 37 H 0.96998 * 120.00077 * 185.00107 * 18 17 15 38 38 H 1.08999 * 117.50012 * 0.02562 * 23 14 13 39 39 H 1.08996 * 117.50072 * 145.01856 * 23 14 13 40 40 H 1.08993 * 117.50428 * 214.97700 * 24 14 13 41 41 H 1.09010 * 117.49783 * 0.02562 * 24 14 13 42 42 H 1.09002 * 109.58364 * 186.60435 * 25 9 8 43 43 H 1.09002 * 109.58825 * 66.18290 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 3.5708 -0.6948 -1.2662 6 1 3.9159 0.3391 -1.2540 7 8 4.0462 -1.3423 -2.4479 8 6 4.1052 -1.4268 -0.0311 9 7 3.5045 -0.8295 1.1694 10 6 4.2810 -0.3866 2.1781 11 8 3.7792 0.1907 3.1232 12 7 5.6138 -0.5837 2.1390 13 6 6.4442 -0.2041 3.2847 14 6 7.9193 -0.4150 2.9375 15 6 8.4421 -1.8132 3.1438 16 1 8.7867 -2.3910 2.2988 17 6 8.4807 -2.3548 4.4111 18 7 8.1927 -1.6078 5.4545 19 14 8.9418 -4.1497 4.6461 20 1 10.4120 -4.2640 4.8218 21 1 8.2565 -4.6833 5.8506 22 1 8.5239 -4.9285 3.4528 23 6 8.8804 0.7455 3.2030 24 6 8.4913 0.3876 1.7672 25 6 2.0413 -0.7242 1.2494 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5128 -0.8906 28 1 -0.3634 0.5149 0.8894 29 1 1.6967 -1.7569 -1.2358 30 1 1.6581 -0.2239 -2.1390 31 1 5.0099 -1.3613 -2.5255 32 1 3.8374 -2.4819 -0.0874 33 1 5.1895 -1.3247 0.0135 34 1 6.0230 -0.9768 1.3524 35 1 6.2739 0.8453 3.5251 36 1 6.1815 -0.8210 4.1441 37 1 8.2899 -1.9675 6.3501 38 1 8.4619 1.6590 3.6255 39 1 9.8911 0.4978 3.5271 40 1 9.2461 -0.0954 1.1468 41 1 7.8168 1.0663 1.2449 42 1 1.7637 -0.1585 2.1388 43 1 1.6052 -1.7220 1.2976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334659536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:57 Heat of formation + Delta-G solvation = -59.980543 kcal Electronic energy + Delta-G solvation = -23174.456009 eV Core-core repulsion = 19834.187848 eV Total energy + Delta-G solvation = -3340.268161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.24901 -38.23251 -36.80551 -35.94791 -33.97356 -32.87522 -32.07290 -30.32351 -27.24436 -26.40398 -25.51789 -24.26925 -22.18370 -21.31624 -20.50899 -19.42176 -19.19075 -17.87108 -17.28260 -16.28818 -15.88905 -15.38055 -14.99866 -14.73948 -14.51285 -14.30807 -14.09669 -13.61059 -13.33072 -13.00118 -12.98171 -12.61426 -12.13581 -12.03049 -11.99512 -11.70381 -11.55460 -11.03743 -11.00778 -10.91581 -10.89966 -10.70482 -10.54972 -10.34481 -10.32541 -9.72408 -9.46224 -9.07247 -8.64103 -8.55961 -8.24340 -7.97803 -6.10200 -4.17314 2.95247 3.24561 3.33054 3.34425 3.65768 3.92006 4.33295 4.43320 4.57713 4.64711 4.75450 4.89643 5.02931 5.10910 5.21574 5.35064 5.41467 5.46389 5.49927 5.62571 5.70223 5.80117 5.83098 5.94187 5.97895 6.04039 6.20145 6.27823 6.44506 6.57699 6.59943 6.66228 6.87421 7.01619 7.28175 7.30146 7.42530 7.48109 7.52189 7.82198 8.31896 8.51695 8.82023 9.12615 9.47768 10.97458 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019689 B = 0.004460 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.771265 B = 6275.904486 C = 6363.072544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 H 0.076 0.924 4 C -0.105 4.105 5 C 0.092 3.908 6 H 0.060 0.940 7 O -0.565 6.565 8 C 0.083 3.917 9 N -0.632 5.632 10 C 0.702 3.298 11 O -0.596 6.596 12 N -0.726 5.726 13 C 0.179 3.821 14 C 0.035 3.965 15 C -0.500 4.500 16 H 0.060 0.940 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.891 3.109 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.165 4.165 24 C -0.209 4.209 25 C 0.133 3.867 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.381 0.619 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.392 0.608 35 H 0.039 0.961 36 H 0.080 0.920 37 H 0.263 0.737 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.490 1.498 -12.967 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.095 0.905 4 C -0.143 4.143 5 C 0.032 3.968 6 H 0.078 0.922 7 O -0.370 6.370 8 C -0.042 4.042 9 N -0.372 5.372 10 C 0.404 3.596 11 O -0.475 6.475 12 N -0.380 5.380 13 C 0.056 3.944 14 C 0.034 3.966 15 C -0.538 4.538 16 H 0.078 0.922 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.204 4.204 24 C -0.246 4.246 25 C 0.009 3.991 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.229 0.771 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.227 0.773 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.533 1.808 -12.111 16.821 hybrid contribution 1.270 -1.068 -0.054 1.660 sum -10.263 0.740 -12.165 15.934 Atomic orbital electron populations 1.21728 0.93976 1.02167 1.02144 1.21503 0.96181 1.00297 0.94506 0.90548 1.21528 0.92904 1.01783 0.98089 1.22152 0.95420 0.95360 0.83894 0.92241 1.86498 1.27179 1.81282 1.42025 1.22302 0.98570 0.98154 0.85181 1.47142 1.06250 1.65811 1.18030 1.15950 0.81953 0.79496 0.82245 1.90868 1.73585 1.47947 1.35110 1.45501 1.04651 1.66512 1.21360 1.20918 0.88790 0.97906 0.86782 1.19089 0.89360 0.92472 0.95637 1.20413 1.43332 0.96813 0.93204 0.92166 1.24981 0.94515 0.97598 0.96031 1.69955 1.46651 1.36170 0.98192 0.86615 0.78429 0.85278 0.77853 1.20646 1.21102 1.19813 1.22721 1.01354 0.99717 0.96595 1.22875 1.04436 1.05554 0.91759 1.21494 0.78574 1.00333 0.98658 0.92367 0.92358 0.92059 0.91020 0.91122 0.77130 0.90756 0.89902 0.77272 0.94266 0.90184 0.92710 0.91588 0.89979 0.90413 0.91548 0.88578 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.11 -1.07 2.87 -90.50 -0.26 -1.33 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.11 -1.04 4.82 -26.69 -0.13 -1.17 16 5 C 0.09 0.97 3.62 -26.61 -0.10 0.87 16 6 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 7 O -0.56 -5.70 13.32 -35.23 -0.47 -6.17 16 8 C 0.08 0.99 6.02 -3.71 -0.02 0.97 16 9 N -0.63 -9.49 2.97 -178.50 -0.53 -10.02 16 10 C 0.70 13.78 8.29 -86.91 -0.72 13.06 16 11 O -0.60 -13.93 15.74 5.29 0.08 -13.85 16 12 N -0.73 -14.34 5.37 -65.22 -0.35 -14.69 16 13 C 0.18 4.19 5.51 -4.04 -0.02 4.17 16 14 C 0.04 0.83 1.34 -155.66 -0.21 0.62 16 15 C -0.50 -12.87 8.84 -34.44 -0.30 -13.18 16 16 H 0.06 1.53 7.82 -52.48 -0.41 1.11 16 17 C 0.07 1.93 5.22 -17.82 -0.09 1.84 16 18 N -0.87 -24.29 12.45 55.43 0.69 -23.60 16 19 Si 0.89 20.55 29.55 -169.99 -5.02 15.52 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.17 -3.70 9.88 -26.73 -0.26 -3.97 16 24 C -0.21 -4.20 9.77 -26.73 -0.26 -4.46 16 25 C 0.13 1.70 5.72 -3.71 -0.02 1.68 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.38 2.45 9.08 45.56 0.41 2.87 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.97 5.64 -51.93 -0.29 0.68 16 34 H 0.39 6.88 5.89 -40.82 -0.24 6.64 16 35 H 0.04 0.94 7.86 -51.93 -0.41 0.53 16 36 H 0.08 2.17 7.12 -51.93 -0.37 1.80 16 37 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 38 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 39 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 42 H 0.10 1.41 6.99 -51.93 -0.36 1.04 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -30.88 346.33 -8.74 -39.62 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.30 Total: 9.67 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.06 Total: -1.70 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -0.19 Total: -48.31 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.39 Total: -20.02 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.88 -8.74 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334659536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.363 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds