Wall clock time and date at job start Tue Mar 31 2020 07:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.70639 * 2 1 4 4 C 1.53711 * 109.83517 * 239.28952 * 2 1 3 5 5 H 1.08997 * 109.69759 * 172.86667 * 4 2 1 6 6 C 1.53000 * 109.44433 * 52.69054 * 4 2 1 7 7 O 1.42966 * 109.14372 * 292.85464 * 4 2 1 8 8 C 1.42951 * 114.16755 * 297.28767 * 7 4 2 9 9 C 1.53294 * 109.22340 * 62.58702 * 8 7 4 10 10 N 1.47149 * 109.68327 * 120.53910 * 2 1 3 11 11 C 1.34770 * 120.98366 * 249.21260 * 10 2 1 12 12 O 1.21592 * 120.00266 * 4.73211 * 11 10 2 13 13 N 1.34776 * 120.00549 * 184.73303 * 11 10 2 14 14 C 1.46496 * 120.00638 * 184.99342 * 13 11 10 15 15 C 1.52992 * 109.47318 * 184.93703 * 14 13 11 16 16 C 1.50705 * 115.56329 * 90.32736 * 15 14 13 17 17 H 1.08001 * 120.00162 * 219.97122 * 16 15 14 18 18 C 1.37878 * 119.99505 * 39.96561 * 16 15 14 19 19 N 1.31509 * 120.00282 * 11.44636 * 18 16 15 20 20 Si 1.86804 * 119.99564 * 191.43605 * 18 16 15 21 21 H 1.48497 * 109.47023 * 0.02562 * 20 18 16 22 22 H 1.48510 * 109.46551 * 120.00518 * 20 18 16 23 23 H 1.48493 * 109.47396 * 240.00290 * 20 18 16 24 24 C 1.53003 * 117.50163 * 304.63785 * 15 14 13 25 25 C 1.53002 * 117.50097 * 236.01423 * 15 14 13 26 26 H 1.09008 * 109.46737 * 299.45985 * 1 2 3 27 27 H 1.08998 * 109.47238 * 59.45442 * 1 2 3 28 28 H 1.09000 * 109.47100 * 179.46519 * 1 2 3 29 29 H 1.08999 * 109.47295 * 300.38600 * 6 4 2 30 30 H 1.09007 * 109.47080 * 60.39133 * 6 4 2 31 31 H 1.09005 * 109.47148 * 180.38771 * 6 4 2 32 32 H 1.08998 * 109.52123 * 302.66022 * 8 7 4 33 33 H 1.09005 * 109.51626 * 182.50761 * 8 7 4 34 34 H 1.09001 * 109.68649 * 187.97597 * 9 8 7 35 35 H 1.08999 * 109.68816 * 67.41870 * 9 8 7 36 36 H 0.97002 * 119.99432 * 4.99413 * 13 11 10 37 37 H 1.09006 * 109.46804 * 64.93461 * 14 13 11 38 38 H 1.09006 * 109.47140 * 304.94132 * 14 13 11 39 39 H 0.97008 * 120.00259 * 174.99331 * 19 18 16 40 40 H 1.09000 * 117.50043 * 145.01906 * 24 15 14 41 41 H 1.08997 * 117.49347 * 359.97438 * 24 15 14 42 42 H 1.09004 * 117.50003 * 0.02562 * 25 15 14 43 43 H 1.09004 * 117.50428 * 214.98241 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0517 -0.7384 -1.2431 5 1 3.1342 -0.6289 -1.3083 6 6 1.4019 -0.1481 -2.4962 7 8 1.7173 -2.1246 -1.1397 8 6 2.3218 -2.7912 -0.0290 9 6 1.8191 -2.1588 1.2737 10 7 2.0257 -0.7040 1.1933 11 6 2.6455 -0.0354 2.1859 12 8 2.7261 1.1771 2.1443 13 7 3.1760 -0.7107 3.2246 14 6 3.7524 0.0201 4.3559 15 6 4.3903 -0.9708 5.3315 16 6 5.8435 -1.2836 5.0833 17 1 6.2058 -2.2944 5.1992 18 6 6.7105 -0.2793 4.7082 19 7 6.3325 0.9780 4.7836 20 14 8.4224 -0.7047 4.0932 21 1 8.5998 -2.1790 4.1033 22 1 8.5914 -0.1956 2.7083 23 1 9.4364 -0.0775 4.9783 24 6 3.5076 -2.0974 5.8723 25 6 3.9130 -0.9380 6.7848 26 1 -0.3633 0.5055 0.8949 27 1 -0.3633 0.5223 -0.8850 28 1 -0.3633 -1.0276 -0.0096 29 1 0.3193 -0.2564 -2.4296 30 1 1.6573 0.9088 -2.5744 31 1 1.7662 -0.6760 -3.3775 32 1 3.4054 -2.6891 -0.0888 33 1 2.0534 -3.8475 -0.0482 34 1 2.3782 -2.5628 2.1177 35 1 0.7577 -2.3724 1.3999 36 1 3.1761 -1.6807 3.2232 37 1 2.9671 0.5780 4.8661 38 1 4.5121 0.7122 3.9922 39 1 6.9651 1.6873 4.5894 40 1 3.9779 -3.0648 6.0486 41 1 2.4723 -2.1323 5.5334 42 1 3.1442 -0.2108 7.0458 43 1 4.6500 -1.1427 7.5614 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335231645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:03 Heat of formation + Delta-G solvation = -39.613810 kcal Electronic energy + Delta-G solvation = -23578.956002 eV Core-core repulsion = 20239.571009 eV Total energy + Delta-G solvation = -3339.384993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38923 -38.44436 -36.76878 -34.61165 -34.07243 -32.68538 -32.24786 -28.92751 -28.72302 -26.16090 -25.30962 -24.11962 -23.37879 -21.39804 -20.48686 -19.28863 -18.83531 -18.03566 -16.65462 -16.18397 -15.86845 -15.50731 -15.18746 -14.81731 -14.59144 -14.13060 -13.87315 -13.61809 -13.16327 -13.08582 -12.79988 -12.53329 -12.28361 -11.93196 -11.78744 -11.66780 -11.56248 -11.43385 -11.04146 -11.01605 -10.76515 -10.54020 -10.47419 -10.35847 -10.01539 -9.66091 -9.33321 -9.17524 -8.84777 -8.43647 -8.23597 -7.81561 -6.09329 -4.16322 2.95944 3.22883 3.32530 3.34568 3.64804 3.78517 4.31494 4.41562 4.64126 4.88575 4.91768 4.96482 5.01253 5.12303 5.24439 5.38345 5.43686 5.47366 5.49498 5.64793 5.73520 5.76578 5.83945 5.88835 5.97861 6.09975 6.24156 6.28234 6.48685 6.55536 6.64893 6.71529 6.92417 6.98874 7.09082 7.24348 7.39249 7.51971 7.66606 8.01874 8.34033 8.60390 8.81331 9.23571 9.44385 10.91504 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018965 B = 0.005090 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.021649 B = 5500.142631 C = 5937.333594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.129 3.871 3 H 0.106 0.894 4 C 0.077 3.923 5 H 0.063 0.937 6 C -0.144 4.144 7 O -0.377 6.377 8 C 0.049 3.951 9 C 0.078 3.922 10 N -0.636 5.636 11 C 0.703 3.297 12 O -0.593 6.593 13 N -0.726 5.726 14 C 0.159 3.841 15 C 0.041 3.959 16 C -0.493 4.493 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.871 5.871 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.283 1.283 24 C -0.212 4.212 25 C -0.191 4.191 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.387 0.613 37 H 0.028 0.972 38 H 0.125 0.875 39 H 0.265 0.735 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.974 -5.830 -10.720 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.024 3.976 3 H 0.124 0.876 4 C 0.019 3.981 5 H 0.081 0.919 6 C -0.202 4.202 7 O -0.296 6.296 8 C -0.029 4.029 9 C -0.046 4.046 10 N -0.376 5.376 11 C 0.404 3.596 12 O -0.471 6.471 13 N -0.380 5.380 14 C 0.036 3.964 15 C 0.040 3.960 16 C -0.530 4.530 17 H 0.080 0.920 18 C -0.133 4.133 19 N -0.508 5.508 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.209 1.209 24 C -0.249 4.249 25 C -0.229 4.229 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.223 0.777 37 H 0.047 0.953 38 H 0.142 0.858 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.949 -4.801 -10.901 15.520 hybrid contribution 1.058 -0.667 0.183 1.264 sum -8.891 -5.468 -10.718 14.961 Atomic orbital electron populations 1.22073 0.94885 1.02351 1.02083 1.21689 0.94535 0.97840 0.83510 0.87646 1.22598 0.98886 0.81789 0.94870 0.91933 1.21821 1.01816 1.00659 0.95892 1.87901 1.72121 1.22053 1.47536 1.22954 0.97642 0.96754 0.85554 1.22244 1.01818 0.81542 0.99023 1.47394 1.62630 1.07020 1.20573 1.15919 0.78606 0.85333 0.79713 1.90873 1.65344 1.11906 1.79007 1.45542 1.62419 1.09544 1.20484 1.21290 0.96130 0.94441 0.84498 1.19202 0.93512 0.93086 0.90215 1.20546 0.91018 0.94903 1.46562 0.91961 1.24998 0.98724 0.94896 0.94704 1.69765 1.34832 0.98892 1.47305 0.86516 0.83923 0.78649 0.78830 1.19679 1.20809 1.20883 1.22861 0.98831 0.94317 1.08936 1.22950 1.02682 1.00179 0.97117 0.92370 0.91419 0.92102 0.91225 0.90785 0.91750 0.92456 0.87845 0.89263 0.90972 0.77717 0.95320 0.85787 0.92450 0.90479 0.91437 0.91534 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.64 37.16 0.32 -1.53 16 2 C 0.13 1.81 2.84 -67.20 -0.19 1.62 16 3 H 0.11 1.68 7.12 -51.93 -0.37 1.31 16 4 C 0.08 0.94 3.12 -26.36 -0.08 0.86 16 5 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.14 -1.35 9.03 37.16 0.34 -1.02 16 7 O -0.38 -4.67 10.01 -35.23 -0.35 -5.03 16 8 C 0.05 0.54 6.98 37.31 0.26 0.81 16 9 C 0.08 0.97 6.25 -3.53 -0.02 0.95 16 10 N -0.64 -10.18 2.71 -170.18 -0.46 -10.64 16 11 C 0.70 14.56 8.31 -86.92 -0.72 13.84 16 12 O -0.59 -14.64 15.82 5.29 0.08 -14.56 16 13 N -0.73 -15.01 5.35 -65.23 -0.35 -15.36 16 14 C 0.16 3.85 5.45 -4.05 -0.02 3.83 16 15 C 0.04 0.97 1.86 -155.66 -0.29 0.68 16 16 C -0.49 -12.92 9.01 -34.44 -0.31 -13.23 16 17 H 0.06 1.62 7.84 -52.49 -0.41 1.20 16 18 C 0.07 1.88 5.16 -17.82 -0.09 1.79 16 19 N -0.87 -24.40 10.89 55.43 0.60 -23.80 16 20 Si 0.89 20.73 29.56 -169.99 -5.02 15.71 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.21 -4.29 9.36 -26.73 -0.25 -4.54 16 25 C -0.19 -4.22 9.88 -26.73 -0.26 -4.49 16 26 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 27 H 0.07 0.66 6.45 -51.93 -0.33 0.32 16 28 H 0.06 0.70 7.21 -51.93 -0.37 0.33 16 29 H 0.07 0.61 6.37 -51.93 -0.33 0.28 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.08 5.65 -51.93 -0.29 0.79 16 35 H 0.07 0.81 7.65 -51.93 -0.40 0.42 16 36 H 0.39 7.07 5.59 -40.82 -0.23 6.84 16 37 H 0.03 0.71 7.88 -51.93 -0.41 0.30 16 38 H 0.12 3.50 5.24 -51.93 -0.27 3.23 16 39 H 0.27 7.13 8.32 -40.82 -0.34 6.79 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 43 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 LS Contribution 338.17 15.07 5.10 5.10 Total: -1.00 -30.74 338.17 -8.51 -39.25 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.78 Total: 9.74 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.33 Total: -0.41 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.21 Total: -49.80 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.27 Total: -19.59 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.74 -8.51 -39.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335231645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.365 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds