Wall clock time and date at job start Tue Mar 31 2020 06:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.58435 * 2 1 4 4 C 1.53199 * 109.70180 * 120.34771 * 2 1 3 5 5 C 1.53044 * 109.30745 * 174.49620 * 4 2 1 6 6 H 1.08998 * 109.45986 * 58.65976 * 5 4 2 7 7 O 1.42901 * 109.44420 * 178.62456 * 5 4 2 8 8 C 1.53034 * 109.53855 * 298.63357 * 5 4 2 9 9 C 1.53192 * 109.31268 * 61.36985 * 8 5 4 10 10 N 1.46915 * 109.59211 * 239.71160 * 2 1 3 11 11 C 1.34779 * 120.62927 * 6.48139 * 10 2 1 12 12 O 1.21585 * 119.99969 * 355.35747 * 11 10 2 13 13 N 1.34779 * 120.00199 * 175.35650 * 11 10 2 14 14 C 1.46504 * 120.00013 * 185.02679 * 13 11 10 15 15 C 1.52992 * 109.46815 * 174.99997 * 14 13 11 16 16 C 1.50695 * 115.55266 * 304.59829 * 15 14 13 17 17 H 1.08007 * 119.99763 * 144.31269 * 16 15 14 18 18 C 1.37874 * 120.00260 * 324.31741 * 16 15 14 19 19 N 1.31519 * 119.99886 * 3.27999 * 18 16 15 20 20 Si 1.86805 * 120.00215 * 183.27933 * 18 16 15 21 21 H 1.48501 * 109.46760 * 89.99919 * 20 18 16 22 22 H 1.48496 * 109.46917 * 210.00293 * 20 18 16 23 23 H 1.48501 * 109.46960 * 330.00270 * 20 18 16 24 24 C 1.53005 * 117.49747 * 158.93352 * 15 14 13 25 25 C 1.53002 * 117.49853 * 90.27837 * 15 14 13 26 26 H 1.09000 * 109.46967 * 174.77709 * 1 2 3 27 27 H 1.09002 * 109.47467 * 294.77930 * 1 2 3 28 28 H 1.09006 * 109.46993 * 54.78046 * 1 2 3 29 29 H 1.08997 * 109.49537 * 54.54755 * 4 2 1 30 30 H 1.08995 * 109.49859 * 294.44139 * 4 2 1 31 31 H 0.96704 * 114.00205 * 180.02562 * 7 5 4 32 32 H 1.08997 * 109.49830 * 181.32168 * 8 5 4 33 33 H 1.09003 * 109.50314 * 301.42013 * 8 5 4 34 34 H 1.08997 * 109.58605 * 65.15294 * 9 8 5 35 35 H 1.09001 * 109.58591 * 185.57702 * 9 8 5 36 36 H 0.96997 * 120.00115 * 5.02022 * 13 11 10 37 37 H 1.08999 * 109.46714 * 295.00110 * 14 13 11 38 38 H 1.08997 * 109.47143 * 54.99487 * 14 13 11 39 39 H 0.97000 * 120.00057 * 185.00450 * 19 18 16 40 40 H 1.09003 * 117.49685 * 359.97438 * 24 15 14 41 41 H 1.08997 * 117.50318 * 145.01805 * 24 15 14 42 42 H 1.09003 * 117.49461 * 214.97831 * 25 15 14 43 43 H 1.08998 * 117.50160 * 359.97073 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7287 1.2447 5 6 3.5706 -0.8441 1.1675 6 1 4.0070 0.1522 1.0966 7 8 4.0585 -1.4950 2.3424 8 6 3.9602 -1.6606 -0.0667 9 6 3.4655 -0.9425 -1.3262 10 7 2.0226 -0.6981 -1.1952 11 6 1.1673 -1.1062 -2.1535 12 8 -0.0310 -0.9736 -1.9954 13 7 1.6401 -1.6612 -3.2870 14 6 0.7198 -2.0037 -4.3742 15 6 1.5186 -2.4978 -5.5819 16 6 2.5802 -1.5558 -6.0885 17 1 3.5085 -1.9475 -6.4776 18 6 2.3666 -0.1942 -6.0551 19 7 1.2640 0.2856 -5.5222 20 14 3.6431 0.9693 -6.7667 21 1 3.3487 1.2089 -8.2024 22 1 3.6023 2.2586 -6.0310 23 1 4.9930 0.3652 -6.6323 24 6 0.7813 -3.3525 -6.6148 25 6 1.8025 -3.9983 -5.6752 26 1 -0.3633 -1.0234 -0.0935 27 1 -0.3634 0.4307 0.9330 28 1 -0.3633 0.5927 -0.8396 29 1 1.6080 -1.7256 1.2907 30 1 1.7689 -0.1670 2.1365 31 1 5.0193 -1.6024 2.3624 32 1 5.0447 -1.7623 -0.1082 33 1 3.5037 -2.6487 -0.0084 34 1 3.9887 0.0076 -1.4344 35 1 3.6525 -1.5666 -2.2000 36 1 2.5898 -1.8338 -3.3830 37 1 0.0409 -2.7890 -4.0416 38 1 0.1448 -1.1214 -4.6550 39 1 1.0796 1.2371 -5.5633 40 1 -0.2728 -3.5631 -6.4337 41 1 1.0644 -3.2337 -7.6607 42 1 2.7572 -4.3042 -6.1032 43 1 1.4207 -4.6335 -4.8759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335322765.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:48 Heat of formation + Delta-G solvation = -36.790562 kcal Electronic energy + Delta-G solvation = -23802.014934 eV Core-core repulsion = 20462.752366 eV Total energy + Delta-G solvation = -3339.262568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14680 -38.00166 -36.79684 -35.43642 -33.77008 -32.25444 -31.62009 -31.11414 -27.25887 -25.87735 -25.16320 -23.88422 -21.98389 -21.26503 -20.80932 -19.23438 -18.92831 -17.34260 -17.26545 -16.20643 -15.64315 -15.12925 -14.74875 -14.64819 -14.50023 -14.06732 -13.75359 -13.42858 -13.29927 -12.76613 -12.54694 -12.25223 -11.93153 -11.80527 -11.62609 -11.50946 -11.39171 -11.36717 -11.11424 -10.85268 -10.69735 -10.53395 -10.43845 -10.23874 -9.95047 -9.63110 -9.00150 -8.82735 -8.51443 -8.26876 -8.20281 -7.63409 -5.98475 -4.19168 3.19799 3.27085 3.29187 3.29609 3.97658 4.18026 4.28428 4.59246 4.72665 4.82094 5.03199 5.03455 5.16319 5.33098 5.44215 5.49203 5.62351 5.64706 5.75039 5.86692 5.89482 6.04324 6.06940 6.11156 6.23209 6.32511 6.56211 6.59140 6.62603 6.76143 6.78423 6.90769 7.05370 7.18698 7.26664 7.50411 7.56677 7.69165 7.82274 8.03406 8.32704 8.77383 8.97843 9.44292 9.55719 10.89989 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.005563 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.828082 B = 5031.663778 C = 5348.216816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.168 3.832 3 H 0.063 0.937 4 C -0.123 4.123 5 C 0.106 3.894 6 H 0.055 0.945 7 O -0.569 6.569 8 C -0.166 4.166 9 C 0.117 3.883 10 N -0.636 5.636 11 C 0.707 3.293 12 O -0.596 6.596 13 N -0.702 5.702 14 C 0.181 3.819 15 C 0.036 3.964 16 C -0.496 4.496 17 H 0.059 0.941 18 C 0.076 3.924 19 N -0.863 5.863 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.198 4.198 25 C -0.213 4.213 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.375 0.625 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.390 0.610 37 H 0.014 0.986 38 H 0.116 0.884 39 H 0.261 0.739 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.743 -1.041 11.069 12.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.081 0.919 4 C -0.162 4.162 5 C 0.047 3.953 6 H 0.073 0.927 7 O -0.375 6.375 8 C -0.205 4.205 9 C -0.008 4.008 10 N -0.375 5.375 11 C 0.409 3.591 12 O -0.477 6.477 13 N -0.355 5.355 14 C 0.057 3.943 15 C 0.035 3.965 16 C -0.533 4.533 17 H 0.077 0.923 18 C -0.129 4.129 19 N -0.499 5.499 20 Si 0.718 3.282 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.236 4.236 25 C -0.251 4.251 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.222 0.778 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.032 0.968 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.128 -0.754 11.363 12.113 hybrid contribution 1.931 0.502 -0.812 2.154 sum 6.060 -0.252 10.552 12.171 Atomic orbital electron populations 1.22147 0.91989 1.04606 0.99897 1.20914 0.96308 0.94016 0.82432 0.91914 1.22017 0.93194 1.02498 0.98449 1.21799 0.95230 0.94368 0.83873 0.92703 1.86526 1.26820 1.82069 1.42063 1.22668 1.01239 1.00870 0.95677 1.21460 0.81665 1.00101 0.97537 1.47273 1.05862 1.62854 1.21533 1.15873 0.84752 0.78408 0.80098 1.90870 1.13887 1.63142 1.79778 1.45066 1.11379 1.64277 1.14748 1.20971 0.90211 0.99962 0.83117 1.19267 0.96626 0.87168 0.93426 1.20477 1.01050 0.89933 1.41868 0.92261 1.24983 0.95666 0.98074 0.94150 1.69870 1.24592 1.13603 1.41840 0.86614 0.81797 0.80430 0.79318 1.20577 1.21256 1.19904 1.22929 0.95151 1.08885 0.96678 1.22948 0.99627 0.99635 1.02840 0.90575 0.94937 0.90526 0.90811 0.90526 0.77823 0.90773 0.90651 0.91746 0.89488 0.77478 0.96792 0.86688 0.92784 0.91462 0.90258 0.90733 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.60 37.16 0.28 -1.84 16 2 C 0.17 2.51 3.48 -67.60 -0.24 2.28 16 3 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.12 -1.58 5.03 -26.61 -0.13 -1.71 16 5 C 0.11 1.19 3.43 -26.69 -0.09 1.10 16 6 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 7 O -0.57 -6.19 13.32 -35.23 -0.47 -6.66 16 8 C -0.17 -1.86 5.70 -26.61 -0.15 -2.01 16 9 C 0.12 1.62 6.39 -3.71 -0.02 1.59 16 10 N -0.64 -10.81 2.97 -170.91 -0.51 -11.32 16 11 C 0.71 14.99 8.21 -86.91 -0.71 14.28 16 12 O -0.60 -14.18 11.75 5.29 0.06 -14.12 16 13 N -0.70 -15.18 5.10 -65.23 -0.33 -15.51 16 14 C 0.18 4.31 4.61 -4.04 -0.02 4.29 16 15 C 0.04 0.84 2.01 -155.66 -0.31 0.53 16 16 C -0.50 -12.45 8.48 -34.44 -0.29 -12.74 16 17 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 18 C 0.08 1.92 5.35 -17.82 -0.10 1.82 16 19 N -0.86 -22.89 10.21 55.43 0.57 -22.33 16 20 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 C -0.20 -4.31 9.96 -26.69 -0.27 -4.58 16 25 C -0.21 -4.42 9.93 -26.69 -0.27 -4.69 16 26 H 0.08 1.41 6.64 -51.93 -0.34 1.07 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 1.47 6.84 -51.93 -0.36 1.12 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.38 2.42 9.08 45.56 0.41 2.84 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.26 5.63 -51.93 -0.29 0.97 16 36 H 0.39 7.97 5.63 -40.82 -0.23 7.74 16 37 H 0.01 0.33 8.10 -51.93 -0.42 -0.09 16 38 H 0.12 3.13 5.84 -51.93 -0.30 2.83 16 39 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -29.01 336.01 -9.11 -38.12 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -6.15 Total: 13.56 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.32 Total: -1.69 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.27 Total: -49.16 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.41 Total: -20.78 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.01 -9.11 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335322765.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.326 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds