Wall clock time and date at job start Tue Mar 31 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.41733 * 2 1 4 4 C 1.54472 * 110.37536 * 122.31217 * 2 1 3 5 5 C 1.54510 * 104.06516 * 142.81045 * 4 2 1 6 6 H 1.08993 * 110.51472 * 118.78092 * 5 4 2 7 7 N 1.46501 * 110.51263 * 241.35960 * 5 4 2 8 8 C 1.34775 * 119.99914 * 205.00117 * 7 5 4 9 9 O 1.21592 * 120.00320 * 5.06377 * 8 7 5 10 10 N 1.34781 * 120.00052 * 185.06564 * 8 7 5 11 11 C 1.46920 * 120.63148 * 174.96027 * 10 8 7 12 12 C 1.53193 * 108.77837 * 233.63246 * 11 10 8 13 13 C 1.53036 * 109.31087 * 305.36564 * 12 11 10 14 14 C 1.50705 * 109.46056 * 181.38540 * 13 12 11 15 15 H 1.08000 * 119.99427 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99658 * 179.72879 * 14 13 12 17 17 N 1.31525 * 119.99416 * 180.27327 * 16 14 13 18 18 Si 1.86798 * 120.00681 * 0.26984 * 16 14 13 19 19 H 1.48502 * 109.46931 * 90.00326 * 18 16 14 20 20 H 1.48500 * 109.47311 * 210.00374 * 18 16 14 21 21 H 1.48496 * 109.46916 * 330.00634 * 18 16 14 22 22 C 1.53045 * 109.53847 * 61.36307 * 13 12 11 23 23 C 1.46927 * 120.62822 * 354.98702 * 10 8 7 24 24 C 1.54485 * 104.05989 * 359.97438 * 5 4 2 25 25 O 1.44425 * 104.80467 * 336.02063 * 24 5 4 26 26 H 1.09004 * 109.46685 * 297.68502 * 1 2 3 27 27 H 1.08993 * 109.47559 * 57.68834 * 1 2 3 28 28 H 1.09007 * 109.47293 * 177.69240 * 1 2 3 29 29 H 1.08999 * 110.51257 * 24.16456 * 4 2 1 30 30 H 1.09005 * 110.51006 * 261.45170 * 4 2 1 31 31 H 0.97001 * 120.00219 * 24.98797 * 7 5 4 32 32 H 1.09003 * 109.58919 * 113.84201 * 11 10 8 33 33 H 1.09006 * 109.59003 * 353.42389 * 11 10 8 34 34 H 1.08999 * 109.49452 * 185.41517 * 12 11 10 35 35 H 1.09002 * 109.49455 * 65.31794 * 12 11 10 36 36 H 1.08998 * 109.46119 * 301.35683 * 13 12 11 37 37 H 0.96996 * 119.99473 * 179.97438 * 17 16 14 38 38 H 1.09007 * 109.49361 * 58.58903 * 22 13 12 39 39 H 1.09002 * 109.49783 * 178.68053 * 22 13 12 40 40 H 1.08999 * 109.58290 * 246.15798 * 23 10 8 41 41 H 1.08999 * 109.58439 * 6.57980 * 23 10 8 42 42 H 1.09002 * 110.37012 * 94.85814 * 24 5 4 43 43 H 1.09002 * 110.37202 * 217.18937 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0678 -0.7740 1.2238 5 6 3.3178 -1.5056 0.6857 6 1 4.2106 -1.1790 1.2189 7 7 3.1535 -2.9567 0.8029 8 6 4.2377 -3.7534 0.8818 9 8 5.3486 -3.2636 0.9486 10 7 4.0906 -5.0932 0.8866 11 6 5.2652 -5.9753 0.8610 12 6 5.1168 -6.9604 -0.3028 13 6 3.7809 -7.6961 -0.1758 14 6 3.6465 -8.6906 -1.3002 15 1 4.4351 -8.7883 -2.0316 16 6 2.5197 -9.4797 -1.3915 17 7 2.4049 -10.3514 -2.3697 18 14 1.1561 -9.3112 -0.1259 19 1 0.1774 -8.2932 -0.5855 20 1 0.4702 -10.6178 0.0398 21 1 1.7367 -8.8884 1.1738 22 6 2.6322 -6.6873 -0.2474 23 6 2.7524 -5.6991 0.9169 24 6 3.3869 -1.0875 -0.7998 25 8 2.0322 -0.7244 -1.1444 26 1 -0.3633 0.4775 0.9101 27 1 -0.3634 0.5493 -0.8685 28 1 -0.3634 -1.0269 -0.0414 29 1 1.3276 -1.4920 1.5771 30 1 2.3430 -0.0839 2.0214 31 1 2.2645 -3.3440 0.8239 32 1 5.3294 -6.5257 1.7997 33 1 6.1671 -5.3791 0.7223 34 1 5.9335 -7.6818 -0.2751 35 1 5.1439 -6.4155 -1.2464 36 1 3.7444 -8.2205 0.7790 37 1 1.6123 -10.9069 -2.4337 38 1 2.6826 -6.1450 -1.1916 39 1 1.6804 -7.2144 -0.1805 40 1 2.6117 -6.2269 1.8602 41 1 1.9964 -4.9206 0.8151 42 1 4.0520 -0.2327 -0.9229 43 1 3.7238 -1.9228 -1.4139 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335386949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:27 Heat of formation + Delta-G solvation = -70.191092 kcal Electronic energy + Delta-G solvation = -23257.287827 eV Core-core repulsion = 19916.576903 eV Total energy + Delta-G solvation = -3340.710924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.53615 -39.34938 -37.16629 -34.60209 -33.53215 -32.37348 -31.59986 -30.70369 -29.62521 -26.42805 -26.15345 -23.25041 -22.71600 -21.86636 -21.27690 -20.19025 -19.14654 -17.89024 -16.83936 -16.74794 -16.36115 -15.76706 -15.35014 -15.15218 -14.63737 -14.16440 -13.89523 -13.61240 -13.37549 -13.04109 -12.94887 -12.73306 -12.57362 -12.53932 -12.13887 -11.94120 -11.86735 -11.63352 -11.53003 -11.12369 -11.04486 -10.73974 -10.26561 -10.19555 -10.09715 -9.82556 -9.73866 -9.34826 -9.11337 -9.01503 -8.58551 -8.11520 -6.10926 -4.10181 2.78703 3.19461 3.29728 3.33558 3.34465 3.68983 3.98053 4.27527 4.35273 4.47781 4.70755 4.83852 5.03678 5.07379 5.14535 5.25393 5.30754 5.34854 5.48386 5.50145 5.60764 5.63823 5.71733 5.73799 5.82302 5.84363 5.85738 5.98092 6.19545 6.28637 6.49468 6.57696 6.63283 6.66076 6.72084 6.86021 7.15957 7.21637 7.47492 7.71694 8.09873 8.48941 8.74937 8.93789 9.50971 11.02573 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020153 B = 0.004608 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.050904 B = 6074.439534 C = 6813.744428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.070 0.930 4 C -0.159 4.159 5 C 0.132 3.868 6 H 0.105 0.895 7 N -0.741 5.741 8 C 0.708 3.292 9 O -0.600 6.600 10 N -0.618 5.618 11 C 0.127 3.873 12 C -0.114 4.114 13 C 0.016 3.984 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.886 3.114 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.265 1.265 22 C -0.135 4.135 23 C 0.108 3.892 24 C 0.033 3.967 25 O -0.369 6.369 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.397 0.603 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.046 19.327 8.828 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.088 0.912 4 C -0.197 4.197 5 C 0.025 3.975 6 H 0.123 0.877 7 N -0.399 5.399 8 C 0.410 3.590 9 O -0.480 6.480 10 N -0.354 5.354 11 C 0.004 3.996 12 C -0.152 4.152 13 C -0.003 4.003 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.717 3.283 19 H -0.206 1.206 20 H -0.225 1.225 21 H -0.190 1.190 22 C -0.173 4.173 23 C -0.015 4.015 24 C -0.045 4.045 25 O -0.288 6.288 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.235 0.765 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.452 19.471 8.589 21.422 hybrid contribution -1.309 -0.246 0.689 1.500 sum -3.762 19.225 9.278 21.676 Atomic orbital electron populations 1.21807 0.93068 1.03171 1.02398 1.23002 0.95505 0.95447 0.85023 0.91167 1.23338 0.97377 1.00135 0.98841 1.22105 0.99236 0.79950 0.96180 0.87699 1.45362 1.08396 1.05903 1.80266 1.15836 0.84313 0.81323 0.77575 1.90865 1.23932 1.74168 1.59013 1.47328 1.08090 1.03420 1.76567 1.21660 0.87142 0.91522 0.99249 1.21850 0.99727 0.96926 0.96735 1.19117 0.90234 0.92909 0.98084 1.21059 1.05120 1.18098 1.10796 0.90818 1.25050 0.98194 0.94858 0.95233 1.69905 1.28894 1.23484 1.31598 0.86864 0.82372 0.76293 0.82813 1.20595 1.22461 1.19012 1.22378 1.00963 0.97262 0.96687 1.21787 0.82726 0.96489 1.00471 1.23943 0.84309 1.00507 0.95735 1.89201 1.27269 1.74406 1.37965 0.91175 0.91776 0.91625 0.89789 0.89400 0.76510 0.92233 0.89771 0.91262 0.92309 0.95397 0.92661 0.91572 0.92495 0.91756 0.91867 0.91403 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.52 37.16 0.35 -0.74 16 2 C 0.07 0.59 3.92 -25.96 -0.10 0.49 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.16 -1.30 6.39 -25.17 -0.16 -1.46 16 5 C 0.13 1.47 3.52 -66.36 -0.23 1.23 16 6 H 0.11 1.24 7.49 -51.93 -0.39 0.85 16 7 N -0.74 -9.69 5.00 -57.14 -0.29 -9.98 16 8 C 0.71 11.76 8.30 -86.92 -0.72 11.03 16 9 O -0.60 -11.60 15.40 5.28 0.08 -11.52 16 10 N -0.62 -10.36 2.97 -178.50 -0.53 -10.89 16 11 C 0.13 2.17 6.42 -3.71 -0.02 2.14 16 12 C -0.11 -2.22 5.30 -26.61 -0.14 -2.36 16 13 C 0.02 0.34 1.65 -91.73 -0.15 0.19 16 14 C -0.51 -13.98 9.14 -34.44 -0.31 -14.29 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 17 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 18 Si 0.89 21.01 24.38 -169.99 -4.14 16.87 16 19 H -0.28 -6.38 6.86 56.52 0.39 -5.99 16 20 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.27 -5.89 6.52 56.52 0.37 -5.52 16 22 C -0.13 -2.70 4.85 -26.61 -0.13 -2.83 16 23 C 0.11 1.74 6.43 -3.71 -0.02 1.71 16 24 C 0.03 0.39 7.35 37.94 0.28 0.67 16 25 O -0.37 -4.51 11.34 -35.23 -0.40 -4.91 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.66 7.43 -51.93 -0.39 0.27 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.40 4.66 5.84 -40.82 -0.24 4.42 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.45 7.03 -51.93 -0.37 1.08 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.03 0.63 7.19 -51.93 -0.37 0.26 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.06 1.20 3.26 -51.93 -0.17 1.03 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.83 5.56 -51.93 -0.29 0.54 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.33 8.06 -51.93 -0.42 0.91 16 LS Contribution 329.51 15.07 4.97 4.97 Total: -1.00 -32.02 329.51 -7.89 -39.91 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.88 Total: 4.34 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.47 Total: -2.39 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.04 Total: -47.26 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.32 Total: -16.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.02 -7.89 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335386949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.282 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds