Wall clock time and date at job start Tue Mar 31 2020 07:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.51634 * 2 1 4 4 C 1.52799 * 109.56110 * 240.06899 * 2 1 3 5 5 N 1.47120 * 108.94735 * 186.11181 * 4 2 1 6 6 C 1.34770 * 121.04801 * 232.14479 * 5 4 2 7 7 O 1.21589 * 119.99900 * 4.92152 * 6 5 4 8 8 N 1.34782 * 120.00180 * 184.92705 * 6 5 4 9 9 C 1.46498 * 119.99982 * 175.02331 * 8 6 5 10 10 C 1.52995 * 109.47095 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.47572 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99667 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00724 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99557 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00283 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47237 * 60.00360 * 15 13 11 17 17 H 1.48501 * 109.47174 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47158 * 299.99823 * 15 13 11 19 19 C 1.47333 * 117.90736 * 51.86178 * 5 4 2 20 20 C 1.52975 * 108.04344 * 311.73879 * 19 5 4 21 21 C 1.53375 * 113.42141 * 277.61919 * 20 19 5 22 22 C 1.53850 * 86.96110 * 220.22813 * 21 20 19 23 23 C 1.53342 * 113.48027 * 179.78639 * 20 19 5 24 24 O 1.42582 * 112.78343 * 48.63103 * 20 19 5 25 25 H 1.09005 * 109.47177 * 299.93338 * 1 2 3 26 26 H 1.09004 * 109.46979 * 59.93024 * 1 2 3 27 27 H 1.08996 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.52632 * 66.24243 * 4 2 1 29 29 H 1.09006 * 109.44090 * 305.92251 * 4 2 1 30 30 H 0.96994 * 119.99941 * 355.02443 * 8 6 5 31 31 H 1.08996 * 109.47319 * 59.99811 * 9 8 6 32 32 H 1.09008 * 109.47446 * 299.99780 * 9 8 6 33 33 H 1.09003 * 109.47485 * 59.99956 * 10 9 8 34 34 H 1.08997 * 109.47015 * 299.99788 * 10 9 8 35 35 H 0.96993 * 119.99597 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.74279 * 71.37169 * 19 5 4 37 37 H 1.09000 * 109.74503 * 192.05288 * 19 5 4 38 38 H 1.09003 * 113.63161 * 334.74310 * 21 20 19 39 39 H 1.09005 * 113.63735 * 105.70586 * 21 20 19 40 40 H 1.09004 * 113.60054 * 270.56246 * 22 21 20 41 41 H 1.09000 * 113.68145 * 139.70704 * 22 21 20 42 42 H 1.08998 * 113.63235 * 254.23158 * 23 20 19 43 43 H 1.08998 * 113.63505 * 25.10543 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7184 -1.2478 5 7 3.5053 -0.8402 -1.1625 6 6 4.2971 -0.4281 -2.1722 7 8 3.8117 0.1346 -3.1346 8 7 5.6270 -0.6397 -2.1152 9 6 6.4738 -0.2909 -3.2586 10 6 7.9306 -0.6299 -2.9365 11 6 8.8017 -0.2717 -4.1129 12 1 8.3605 0.1555 -5.0013 13 6 10.1621 -0.4882 -4.0547 14 7 10.6995 -1.0079 -2.9727 15 14 11.2419 -0.0436 -5.5126 16 1 11.1217 1.4099 -5.7925 17 1 12.6560 -0.3715 -5.1996 18 1 10.8065 -0.8150 -6.7046 19 6 4.0786 -1.4212 0.0641 20 6 3.4290 -0.7299 1.2642 21 6 4.0737 0.6170 1.6145 22 6 3.9164 0.2154 3.0913 23 6 3.9359 -1.2477 2.6156 24 8 2.0075 -0.6758 1.1674 25 1 -0.3634 0.5128 0.8906 26 1 -0.3633 0.5149 -0.8894 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7736 -0.1440 -2.1345 29 1 1.5948 -1.7111 -1.3037 30 1 6.0233 -1.0230 -1.3172 31 1 6.3855 0.7758 -3.4642 32 1 6.1544 -0.8572 -4.1336 33 1 8.0186 -1.6968 -2.7313 34 1 8.2503 -0.0640 -2.0616 35 1 11.6566 -1.1599 -2.9316 36 1 3.8697 -2.4904 0.0976 37 1 5.1558 -1.2556 0.0814 38 1 5.1118 0.7013 1.2928 39 1 3.4694 1.4781 1.3290 40 1 2.9649 0.5199 3.5274 41 1 4.7714 0.4842 3.7116 42 1 3.2209 -1.8856 3.1352 43 1 4.9352 -1.6807 2.5707 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335397196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:40 Heat of formation + Delta-G solvation = -52.898543 kcal Electronic energy + Delta-G solvation = -22989.407202 eV Core-core repulsion = 19649.446139 eV Total energy + Delta-G solvation = -3339.961063 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99632 -39.18575 -36.84812 -34.92113 -34.69381 -32.85767 -32.01227 -29.59857 -28.25099 -26.41446 -26.04541 -24.37468 -23.28272 -21.75399 -20.97835 -19.83124 -19.29209 -17.91104 -16.90149 -16.39705 -16.00960 -15.92157 -15.23311 -14.94060 -14.70553 -14.51134 -14.15206 -13.88851 -13.66682 -13.31272 -12.90846 -12.64295 -12.51363 -12.34633 -12.27133 -12.07967 -11.63028 -11.27207 -11.16723 -11.04751 -11.02549 -10.91337 -10.65087 -10.48856 -10.32401 -9.96905 -9.86927 -9.55146 -9.28569 -8.68156 -8.44621 -8.17338 -6.09747 -4.12440 2.75937 3.27195 3.31260 3.34940 3.38507 3.49444 4.13517 4.31819 4.39274 4.45554 4.48210 4.61911 4.71393 4.89306 4.95973 5.03945 5.09589 5.27370 5.36619 5.46507 5.47283 5.53805 5.55555 5.62964 5.71913 5.72696 5.80045 5.93840 5.96820 6.09164 6.22068 6.38294 6.47307 6.75533 6.96948 7.04301 7.12349 7.53887 7.61626 7.89032 8.22289 8.33757 8.89724 8.95217 9.52299 11.01931 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024977 B = 0.003647 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.783384 B = 7674.728702 C = 8495.612553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 H 0.064 0.936 4 C 0.102 3.898 5 N -0.637 5.637 6 C 0.705 3.295 7 O -0.595 6.595 8 N -0.738 5.738 9 C 0.139 3.861 10 C 0.014 3.986 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.098 3.902 20 C 0.081 3.919 21 C -0.161 4.161 22 C -0.133 4.133 23 C -0.121 4.121 24 O -0.352 6.352 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.391 0.609 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.262 0.738 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.214 -0.505 12.896 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.021 4.021 5 N -0.376 5.376 6 C 0.407 3.593 7 O -0.473 6.473 8 N -0.393 5.393 9 C 0.016 3.984 10 C -0.024 4.024 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.026 4.026 20 C 0.041 3.959 21 C -0.199 4.199 22 C -0.171 4.171 23 C -0.159 4.159 24 O -0.271 6.271 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.227 0.773 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.478 -0.233 12.329 21.390 hybrid contribution 1.085 0.087 -0.528 1.210 sum -16.392 -0.146 11.801 20.199 Atomic orbital electron populations 1.21712 0.92166 1.03178 1.02840 1.22431 0.95250 0.95891 0.85013 0.91821 1.21995 0.79272 1.01435 0.99429 1.47297 1.06146 1.66934 1.17218 1.15923 0.81830 0.79254 0.82341 1.90873 1.74346 1.48205 1.33914 1.45676 1.05116 1.67758 1.20708 1.21618 0.91298 0.99544 0.85918 1.19314 0.87785 0.97386 0.97884 1.21009 0.92017 1.42187 1.00793 0.92263 1.24989 0.98108 0.94991 0.96161 1.69945 1.11958 1.43988 1.27466 0.86563 0.79191 0.79061 0.82672 1.20101 1.21250 1.20094 1.22194 0.98564 0.98108 0.83723 1.22561 0.82051 0.96627 0.94709 1.23470 1.01842 0.97630 0.96948 1.22778 1.02306 0.95798 0.96188 1.22929 1.01701 0.97605 0.93668 1.87886 1.18614 1.77678 1.42921 0.91550 0.90608 0.91559 0.87957 0.91244 0.77340 0.92675 0.92794 0.96005 0.96021 0.92801 0.90722 0.89073 0.89003 0.91093 0.89933 0.91058 0.90227 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.57 37.16 0.36 -0.78 16 2 C 0.07 0.78 3.28 -26.83 -0.09 0.69 16 3 H 0.06 0.74 7.11 -51.93 -0.37 0.37 16 4 C 0.10 1.28 5.86 -3.81 -0.02 1.25 16 5 N -0.64 -9.15 3.03 -178.38 -0.54 -9.69 16 6 C 0.70 12.97 8.31 -86.92 -0.72 12.25 16 7 O -0.59 -13.07 15.81 5.29 0.08 -12.98 16 8 N -0.74 -13.54 5.46 -65.23 -0.36 -13.90 16 9 C 0.14 3.03 5.62 -4.05 -0.02 3.01 16 10 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 11 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 12 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 15 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.10 1.14 5.69 -3.60 -0.02 1.11 16 20 C 0.08 0.86 1.12 -90.26 -0.10 0.76 16 21 C -0.16 -1.69 7.23 -26.09 -0.19 -1.88 16 22 C -0.13 -1.16 8.02 -25.84 -0.21 -1.37 16 23 C -0.12 -1.04 7.47 -26.11 -0.20 -1.23 16 24 O -0.35 -4.02 10.08 -35.23 -0.36 -4.38 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.10 1.39 7.05 -51.93 -0.37 1.02 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.39 6.28 6.06 -40.82 -0.25 6.03 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.01 5.65 -51.93 -0.29 0.72 16 38 H 0.09 0.99 7.95 -51.93 -0.41 0.57 16 39 H 0.07 0.80 7.18 -51.93 -0.37 0.43 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 LS Contribution 343.20 15.07 5.17 5.17 Total: -1.00 -32.15 343.20 -9.14 -41.29 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.10 Total: 2.65 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.77 Total: 0.77 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.16 Total: -48.90 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.27 Total: -17.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.15 -9.14 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335397196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.604 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds