Wall clock time and date at job start Tue Mar 31 2020 07:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.49228 * 2 1 4 4 C 1.53224 * 109.49750 * 120.05663 * 2 1 3 5 5 N 1.47120 * 108.71724 * 174.05313 * 4 2 1 6 6 C 1.34780 * 121.04321 * 127.85372 * 5 4 2 7 7 O 1.21575 * 120.00323 * 354.75951 * 6 5 4 8 8 N 1.34783 * 119.99587 * 174.75942 * 6 5 4 9 9 C 1.46502 * 119.99751 * 184.96994 * 8 6 5 10 10 C 1.53002 * 109.46880 * 180.02562 * 9 8 6 11 11 C 1.50704 * 109.46759 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00026 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99707 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00267 * 180.02562 * 13 11 10 15 15 Si 1.86809 * 120.00332 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46997 * 89.99620 * 15 13 11 17 17 H 1.48495 * 109.47044 * 210.00051 * 15 13 11 18 18 H 1.48506 * 109.46577 * 330.00005 * 15 13 11 19 19 C 1.47324 * 117.90985 * 307.83095 * 5 4 2 20 20 C 1.52970 * 108.04403 * 48.51889 * 19 5 4 21 21 C 1.53364 * 113.42268 * 82.39506 * 20 19 5 22 22 C 1.53856 * 87.06021 * 139.71871 * 21 20 19 23 23 C 1.53355 * 113.47634 * 180.22684 * 20 19 5 24 24 O 1.42582 * 112.78435 * 311.37158 * 20 19 5 25 25 H 1.08995 * 109.47119 * 299.94186 * 1 2 3 26 26 H 1.08993 * 109.47801 * 59.94480 * 1 2 3 27 27 H 1.09010 * 109.47065 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.59755 * 54.27910 * 4 2 1 29 29 H 1.09005 * 109.71674 * 293.89932 * 4 2 1 30 30 H 0.97001 * 120.00007 * 4.97536 * 8 6 5 31 31 H 1.08999 * 109.47251 * 300.00606 * 9 8 6 32 32 H 1.08996 * 109.46960 * 60.00569 * 9 8 6 33 33 H 1.08999 * 109.47480 * 300.00229 * 10 9 8 34 34 H 1.08996 * 109.47053 * 60.00389 * 10 9 8 35 35 H 0.96996 * 120.00657 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.74781 * 288.88169 * 19 5 4 37 37 H 1.08996 * 109.74726 * 168.15677 * 19 5 4 38 38 H 1.09003 * 113.63609 * 254.28583 * 21 20 19 39 39 H 1.09002 * 113.63397 * 25.15589 * 21 20 19 40 40 H 1.09005 * 113.60061 * 89.48559 * 22 21 20 41 41 H 1.08997 * 113.60288 * 220.35095 * 22 21 20 42 42 H 1.08994 * 113.62928 * 334.81075 * 23 20 19 43 43 H 1.08999 * 113.62918 * 105.68284 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7234 1.2502 5 7 3.5053 -0.8396 1.1627 6 6 4.2968 -0.4280 2.1730 7 8 3.8113 0.1345 3.1352 8 7 5.6267 -0.6402 2.1166 9 6 6.4731 -0.2920 3.2604 10 6 7.9301 -0.6304 2.9384 11 6 8.8008 -0.2727 4.1153 12 1 8.3590 0.1529 5.0042 13 6 10.1611 -0.4899 4.0577 14 7 10.9209 -0.1783 5.0848 15 14 10.9251 -1.2267 2.5204 16 1 11.3103 -0.1370 1.5880 17 1 12.1311 -2.0088 2.8932 18 1 9.9409 -2.1201 1.8581 19 6 4.0790 -1.4204 -0.0637 20 6 3.4294 -0.7293 -1.2640 21 6 4.0740 0.6174 -1.6144 22 6 3.9192 0.2172 -3.0919 23 6 3.9366 -1.2474 -2.6153 24 8 2.0079 -0.6755 -1.1674 25 1 -0.3633 0.5129 0.8905 26 1 -0.3634 0.5146 -0.8894 27 1 -0.3634 -1.0278 -0.0005 28 1 1.5982 -1.7178 1.3041 29 1 1.7722 -0.1545 2.1402 30 1 6.0232 -1.0234 1.3185 31 1 6.3851 0.7748 3.4662 32 1 6.1531 -0.8583 4.1350 33 1 8.0185 -1.6971 2.7324 34 1 8.2499 -0.0637 2.0639 35 1 11.8779 -0.3307 5.0442 36 1 3.8705 -2.4897 -0.0972 37 1 5.1560 -1.2538 -0.0813 38 1 3.4696 1.4786 -1.3292 39 1 5.1115 0.7026 -1.2911 40 1 2.9687 0.5226 -3.5295 41 1 4.7762 0.4866 -3.7091 42 1 4.9364 -1.6790 -2.5704 43 1 3.2222 -1.8866 -3.1341 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335397197.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:44 Heat of formation + Delta-G solvation = -48.644135 kcal Electronic energy + Delta-G solvation = -23065.050124 eV Core-core repulsion = 19725.273546 eV Total energy + Delta-G solvation = -3339.776578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.05902 -39.27239 -36.89749 -35.05297 -34.77769 -32.82344 -32.05708 -30.08340 -28.32511 -26.58194 -26.11550 -24.41138 -23.35288 -21.75196 -20.84507 -19.89356 -19.36650 -17.96368 -17.07675 -16.74071 -16.12603 -15.99999 -15.30423 -15.02058 -14.79538 -14.33711 -14.11088 -14.02302 -13.79576 -13.41660 -13.06780 -12.72451 -12.62466 -12.54782 -12.39885 -12.14870 -11.70011 -11.46943 -11.32318 -11.23202 -11.10682 -10.97742 -10.56048 -10.40701 -10.25238 -10.02816 -9.96558 -9.74234 -9.33789 -8.75899 -8.62403 -8.28652 -6.11768 -4.11886 2.67633 3.20939 3.23834 3.31287 3.32616 3.41152 4.04587 4.24726 4.33409 4.36572 4.40830 4.54593 4.65145 4.83196 4.89245 4.97544 5.02031 5.21022 5.31462 5.38391 5.39125 5.47158 5.49848 5.57341 5.65438 5.66754 5.74922 5.88885 5.89432 6.01096 6.04319 6.22946 6.36236 6.56404 6.78122 6.95511 6.99224 7.21047 7.23724 7.66201 8.16502 8.44156 8.82574 8.93021 9.48217 11.01315 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.004080 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.918727 B = 6861.393877 C = 7818.030427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.064 0.936 4 C 0.103 3.897 5 N -0.637 5.637 6 C 0.706 3.294 7 O -0.590 6.590 8 N -0.741 5.741 9 C 0.147 3.853 10 C -0.021 4.021 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.267 1.267 19 C 0.098 3.902 20 C 0.082 3.918 21 C -0.161 4.161 22 C -0.133 4.133 23 C -0.121 4.121 24 O -0.351 6.351 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.390 0.610 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.016 0.984 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.060 -2.419 -17.822 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.082 0.918 4 C -0.021 4.021 5 N -0.376 5.376 6 C 0.407 3.593 7 O -0.469 6.469 8 N -0.397 5.397 9 C 0.025 3.975 10 C -0.059 4.059 11 C -0.560 4.560 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.537 5.537 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.191 1.191 19 C -0.026 4.026 20 C 0.041 3.959 21 C -0.199 4.199 22 C -0.171 4.171 23 C -0.159 4.159 24 O -0.270 6.270 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.225 0.775 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.310 -2.087 -17.101 25.141 hybrid contribution 0.980 -0.473 -0.913 1.421 sum -17.330 -2.560 -18.014 25.128 Atomic orbital electron populations 1.21713 0.92137 1.03201 1.02885 1.22513 0.95273 0.95855 0.84921 0.91754 1.22094 0.79090 1.01465 0.99470 1.47305 1.06220 1.66965 1.17120 1.15887 0.81727 0.79271 0.82370 1.90889 1.74233 1.47927 1.33816 1.45671 1.05332 1.68064 1.20593 1.21404 0.89929 1.00206 0.86006 1.19792 0.91031 0.96827 0.98227 1.20909 0.91677 1.42637 1.00820 0.90565 1.24995 0.97118 0.94943 0.96197 1.69897 1.05451 1.48011 1.30294 0.86757 0.78949 0.79713 0.83682 1.20222 1.21246 1.19124 1.22185 0.98422 0.98150 0.83817 1.22551 0.82148 0.96601 0.94645 1.23465 1.01776 0.97695 0.96969 1.22810 1.02344 0.95743 0.96156 1.22958 1.01626 0.97621 0.93709 1.87890 1.18507 1.77692 1.42944 0.90569 0.91530 0.91551 0.91185 0.87878 0.77537 0.92046 0.92133 0.96073 0.96526 0.92537 0.90701 0.89243 0.91026 0.89115 0.89864 0.91070 0.88437 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.57 37.15 0.36 -0.73 16 2 C 0.07 0.74 3.29 -26.62 -0.09 0.66 16 3 H 0.06 0.72 7.11 -51.93 -0.37 0.35 16 4 C 0.10 1.22 5.89 -3.59 -0.02 1.20 16 5 N -0.64 -8.69 3.03 -178.13 -0.54 -9.23 16 6 C 0.71 12.44 8.31 -86.91 -0.72 11.72 16 7 O -0.59 -12.63 15.81 5.30 0.08 -12.55 16 8 N -0.74 -12.80 5.46 -65.22 -0.36 -13.15 16 9 C 0.15 3.07 5.62 -4.04 -0.02 3.05 16 10 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 11 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 12 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 15 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 19 C 0.10 1.05 5.69 -3.61 -0.02 1.03 16 20 C 0.08 0.81 1.12 -90.26 -0.10 0.71 16 21 C -0.16 -1.58 7.22 -26.10 -0.19 -1.76 16 22 C -0.13 -1.07 8.04 -25.75 -0.21 -1.28 16 23 C -0.12 -0.95 7.48 -26.01 -0.19 -1.15 16 24 O -0.35 -3.81 10.09 -35.23 -0.36 -4.16 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.35 7.05 -51.93 -0.37 0.98 16 30 H 0.39 5.68 6.06 -40.82 -0.25 5.43 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 34 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.89 5.64 -51.93 -0.29 0.60 16 38 H 0.07 0.76 7.18 -51.93 -0.37 0.39 16 39 H 0.09 0.89 7.95 -51.93 -0.41 0.48 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.64 8.09 -51.93 -0.42 0.22 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.65 15.07 5.12 5.12 Total: -1.00 -32.92 339.65 -8.76 -41.69 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.06 Total: 2.82 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.76 Total: -0.25 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.12 Total: -48.92 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.27 Total: -16.71 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.92 -8.76 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335397197.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.959 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds