Wall clock time and date at job start Tue Mar 31 2020 07:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.99041 * 2 1 4 4 O 1.43743 * 109.87907 * 121.08069 * 2 1 3 5 5 C 1.44382 * 106.97260 * 145.93676 * 4 2 1 6 6 C 1.55229 * 103.56734 * 320.01277 * 5 4 2 7 7 C 1.54097 * 109.87752 * 238.91578 * 2 1 3 8 8 H 1.08995 * 110.48769 * 119.73307 * 7 2 1 9 9 N 1.46502 * 110.48581 * 357.22150 * 7 2 1 10 10 C 1.34776 * 119.99708 * 156.84864 * 9 7 2 11 11 O 1.21587 * 120.00392 * 4.97844 * 10 9 7 12 12 N 1.34780 * 119.99794 * 184.98206 * 10 9 7 13 13 C 1.46924 * 120.63256 * 354.76748 * 12 10 9 14 14 C 1.53192 * 108.77677 * 233.62928 * 13 12 10 15 15 C 1.53035 * 109.31216 * 305.36574 * 14 13 12 16 16 C 1.50700 * 109.45869 * 181.38404 * 15 14 13 17 17 H 1.08003 * 120.00204 * 359.69710 * 16 15 14 18 18 C 1.37885 * 120.00190 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00129 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99766 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47093 * 90.00084 * 20 18 16 22 22 H 1.48497 * 109.47013 * 210.00050 * 20 18 16 23 23 H 1.48504 * 109.46960 * 330.00359 * 20 18 16 24 24 C 1.53039 * 109.52836 * 61.37004 * 15 14 13 25 25 C 1.46933 * 120.62870 * 174.79105 * 12 10 9 26 26 H 1.09004 * 109.47403 * 181.08792 * 1 2 3 27 27 H 1.09006 * 109.47338 * 301.08556 * 1 2 3 28 28 H 1.09001 * 109.47547 * 61.08391 * 1 2 3 29 29 H 1.08996 * 110.61743 * 78.44003 * 5 4 2 30 30 H 1.08999 * 110.61814 * 201.28513 * 5 4 2 31 31 H 1.08996 * 110.89165 * 278.74724 * 6 5 4 32 32 H 1.08996 * 111.01831 * 155.07188 * 6 5 4 33 33 H 0.96999 * 120.00316 * 336.84503 * 9 7 2 34 34 H 1.08999 * 109.58620 * 113.84504 * 13 12 10 35 35 H 1.09004 * 109.58345 * 353.41684 * 13 12 10 36 36 H 1.08998 * 109.50038 * 185.40990 * 14 13 12 37 37 H 1.09004 * 109.49464 * 65.31730 * 14 13 12 38 38 H 1.08994 * 109.46082 * 301.35235 * 15 14 13 39 39 H 0.97000 * 120.00335 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.49679 * 58.58090 * 24 15 14 41 41 H 1.09005 * 109.49687 * 178.67230 * 24 15 14 42 42 H 1.09002 * 109.58200 * 246.15468 * 25 12 10 43 43 H 1.08998 * 109.58832 * 6.57999 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6978 1.1577 5 6 3.2379 -1.3641 0.7647 6 6 2.9216 -1.8914 -0.6606 7 6 2.0539 -0.7482 -1.2411 8 1 2.6599 -0.0853 -1.8586 9 7 0.9392 -1.2948 -2.0188 10 6 1.1002 -1.5642 -3.3295 11 8 2.1939 -1.4397 -3.8460 12 7 0.0488 -1.9716 -4.0678 13 6 -1.2513 -2.2366 -3.4368 14 6 -1.7064 -3.6485 -3.8193 15 6 -1.7083 -3.7840 -5.3437 16 6 -2.1881 -5.1608 -5.7247 17 1 -2.4592 -5.8700 -4.9566 18 6 -2.2754 -5.5173 -7.0538 19 7 -2.6945 -6.7186 -7.3863 20 14 -1.7997 -4.2931 -8.3822 21 1 -0.3553 -4.4384 -8.6949 22 1 -2.5997 -4.5545 -9.6056 23 1 -2.0658 -2.9133 -7.9020 24 6 -0.2899 -3.5723 -5.8779 25 6 0.1811 -2.1595 -5.5191 26 1 -0.3634 -1.0275 0.0195 27 1 -0.3634 0.5306 0.8801 28 1 -0.3634 0.4969 -0.8995 29 1 4.0684 -0.6588 0.7355 30 1 3.4599 -2.1890 1.4417 31 1 2.3573 -2.8228 -0.6140 32 1 3.8348 -2.0201 -1.2415 33 1 0.0853 -1.4628 -1.5905 34 1 -1.9831 -1.5092 -3.7881 35 1 -1.1529 -2.1653 -2.3536 36 1 -2.7122 -3.8226 -3.4373 37 1 -1.0219 -4.3802 -3.3899 38 1 -2.3739 -3.0357 -5.7739 39 1 -2.7563 -6.9693 -8.3213 40 1 0.3810 -4.3048 -5.4289 41 1 -0.2876 -3.6922 -6.9614 42 1 -0.4339 -1.4257 -6.0401 43 1 1.2245 -2.0373 -5.8098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335766094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:45 Heat of formation + Delta-G solvation = -61.775990 kcal Electronic energy + Delta-G solvation = -23382.265025 eV Core-core repulsion = 20041.919008 eV Total energy + Delta-G solvation = -3340.346018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.68286 -39.38241 -37.16857 -34.85061 -33.57799 -31.75877 -31.63270 -30.86934 -30.01248 -26.60764 -25.88147 -23.12234 -22.72943 -22.41803 -21.01943 -20.02836 -19.34761 -17.97789 -16.84745 -16.50248 -16.34265 -15.90671 -15.48594 -15.05468 -14.77039 -14.29984 -13.98403 -13.54939 -13.22395 -13.10628 -12.98978 -12.79592 -12.59577 -12.41978 -12.34630 -12.23229 -11.88826 -11.45257 -11.30948 -11.09929 -11.00170 -10.78248 -10.21144 -10.07663 -10.05900 -9.93741 -9.75747 -9.34237 -9.12150 -9.08295 -8.56890 -8.12800 -6.10733 -4.10364 2.76150 3.24967 3.33576 3.34440 3.37424 3.53884 3.98434 4.32821 4.37389 4.46097 4.70498 4.85768 4.90394 5.04930 5.16563 5.19771 5.25882 5.33826 5.48208 5.51387 5.55927 5.63540 5.72413 5.78570 5.81000 5.83219 5.87147 5.99630 6.21724 6.24716 6.50080 6.52482 6.58690 6.65984 6.69681 6.85451 7.13903 7.18844 7.46601 7.71724 8.09005 8.47504 8.74881 8.92674 9.51459 11.02529 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033376 B = 0.004003 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.715529 B = 6993.134727 C = 7187.842164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.067 3.933 3 H 0.079 0.921 4 O -0.373 6.373 5 C 0.047 3.953 6 C -0.167 4.167 7 C 0.136 3.864 8 H 0.101 0.899 9 N -0.744 5.744 10 C 0.706 3.294 11 O -0.597 6.597 12 N -0.618 5.618 13 C 0.110 3.890 14 C -0.114 4.114 15 C 0.016 3.984 16 C -0.515 4.515 17 H 0.073 0.927 18 C 0.069 3.931 19 N -0.901 5.901 20 Si 0.886 3.114 21 H -0.278 1.278 22 H -0.297 1.297 23 H -0.265 1.265 24 C -0.135 4.135 25 C 0.125 3.875 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 14.131 14.306 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.008 3.992 3 H 0.097 0.903 4 O -0.292 6.292 5 C -0.030 4.030 6 C -0.206 4.206 7 C 0.029 3.971 8 H 0.119 0.881 9 N -0.405 5.405 10 C 0.408 3.592 11 O -0.477 6.477 12 N -0.355 5.355 13 C -0.014 4.014 14 C -0.152 4.152 15 C -0.003 4.003 16 C -0.553 4.553 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.539 5.539 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.225 1.225 23 H -0.190 1.190 24 C -0.173 4.173 25 C 0.002 3.998 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.240 0.760 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.975 14.112 13.968 21.398 hybrid contribution -0.048 0.273 -0.867 0.911 sum 7.927 14.385 13.101 21.010 Atomic orbital electron populations 1.21919 0.93637 1.02773 1.03069 1.22951 0.95699 0.95859 0.84684 0.90272 1.88916 1.39968 1.67708 1.32600 1.23579 0.87488 0.96506 0.95436 1.23631 1.01412 0.99544 0.96014 1.22099 0.87849 0.94932 0.92173 0.88125 1.45570 1.15841 1.70489 1.08600 1.15853 0.84210 0.78065 0.81064 1.90869 1.24224 1.60733 1.71827 1.47321 1.09850 1.69745 1.08571 1.21797 0.84508 0.99264 0.95790 1.21834 1.00804 0.93353 0.99218 1.19113 0.91712 0.98186 0.91318 1.21030 1.43985 0.97124 0.93112 0.90894 1.25034 0.94577 0.94965 0.98660 1.69894 1.47082 1.19126 1.17780 0.86869 0.77954 0.82385 0.81163 1.20461 1.22492 1.18974 1.22377 1.00488 0.94141 1.00289 1.21651 1.02072 0.98259 0.77772 0.91709 0.91230 0.90582 0.91930 0.88700 0.89925 0.89415 0.75998 0.91579 0.91938 0.91260 0.92236 0.95366 0.92636 0.91720 0.92468 0.92318 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 8.26 37.16 0.31 -0.96 16 2 C 0.07 0.61 4.06 -26.16 -0.11 0.51 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 O -0.37 -3.91 11.19 -35.23 -0.39 -4.30 16 5 C 0.05 0.40 7.72 38.34 0.30 0.70 16 6 C -0.17 -1.74 6.90 -24.60 -0.17 -1.91 16 7 C 0.14 1.49 3.30 -66.40 -0.22 1.27 16 8 H 0.10 1.19 7.68 -51.93 -0.40 0.79 16 9 N -0.74 -9.26 4.46 -57.18 -0.25 -9.52 16 10 C 0.71 11.64 8.29 -86.92 -0.72 10.92 16 11 O -0.60 -11.76 15.49 5.29 0.08 -11.68 16 12 N -0.62 -10.25 2.97 -178.50 -0.53 -10.78 16 13 C 0.11 1.58 6.39 -3.71 -0.02 1.55 16 14 C -0.11 -2.05 5.30 -26.61 -0.14 -2.19 16 15 C 0.02 0.35 1.66 -91.73 -0.15 0.19 16 16 C -0.51 -13.97 9.14 -34.44 -0.31 -14.28 16 17 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 18 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 19 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 20 Si 0.89 21.46 24.38 -169.99 -4.15 17.32 16 21 H -0.28 -6.60 6.86 56.52 0.39 -6.22 16 22 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.26 -6.03 6.53 56.52 0.37 -5.66 16 24 C -0.13 -2.86 4.85 -26.62 -0.13 -2.98 16 25 C 0.13 2.28 6.44 -3.71 -0.02 2.26 16 26 H 0.06 0.53 6.83 -51.93 -0.35 0.18 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.58 7.83 -51.93 -0.41 0.17 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.40 4.28 3.34 -40.82 -0.14 4.15 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.71 5.65 -51.93 -0.29 0.42 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.06 1.43 8.14 -51.92 -0.42 1.01 16 41 H 0.06 1.28 3.25 -51.93 -0.17 1.12 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.56 6.99 -51.93 -0.36 1.20 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -32.17 325.24 -7.80 -39.98 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.74 Total: 3.59 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -1.49 Total: -3.06 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -0.01 Total: -46.75 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.31 Total: -15.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.15 Total: 17.32 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.17 -7.80 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335766094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.798 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds