Wall clock time and date at job start Tue Mar 31 2020 07:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.99041 * 2 1 4 4 O 1.43743 * 109.87907 * 121.08069 * 2 1 3 5 5 C 1.44382 * 106.97260 * 145.93676 * 4 2 1 6 6 C 1.55229 * 103.56734 * 320.01277 * 5 4 2 7 7 C 1.54097 * 109.87752 * 238.91578 * 2 1 3 8 8 H 1.08995 * 110.48769 * 119.73307 * 7 2 1 9 9 N 1.46502 * 110.48581 * 357.22150 * 7 2 1 10 10 C 1.34776 * 119.99708 * 156.84864 * 9 7 2 11 11 O 1.21587 * 120.00392 * 4.97844 * 10 9 7 12 12 N 1.34780 * 119.99794 * 184.98206 * 10 9 7 13 13 C 1.46924 * 120.63256 * 354.76748 * 12 10 9 14 14 C 1.53192 * 108.77677 * 233.62928 * 13 12 10 15 15 C 1.53035 * 109.31216 * 305.36574 * 14 13 12 16 16 C 1.50700 * 109.45869 * 181.38404 * 15 14 13 17 17 H 1.08003 * 120.00204 * 359.69710 * 16 15 14 18 18 C 1.37885 * 120.00190 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00129 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99766 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47093 * 90.00084 * 20 18 16 22 22 H 1.48497 * 109.47013 * 210.00050 * 20 18 16 23 23 H 1.48504 * 109.46960 * 330.00359 * 20 18 16 24 24 C 1.53039 * 109.52836 * 61.37004 * 15 14 13 25 25 C 1.46933 * 120.62870 * 174.79105 * 12 10 9 26 26 H 1.09004 * 109.47403 * 181.08792 * 1 2 3 27 27 H 1.09006 * 109.47338 * 301.08556 * 1 2 3 28 28 H 1.09001 * 109.47547 * 61.08391 * 1 2 3 29 29 H 1.08996 * 110.61743 * 78.44003 * 5 4 2 30 30 H 1.08999 * 110.61814 * 201.28513 * 5 4 2 31 31 H 1.08996 * 110.89165 * 278.74724 * 6 5 4 32 32 H 1.08996 * 111.01831 * 155.07188 * 6 5 4 33 33 H 0.96999 * 120.00316 * 336.84503 * 9 7 2 34 34 H 1.08999 * 109.58620 * 113.84504 * 13 12 10 35 35 H 1.09004 * 109.58345 * 353.41684 * 13 12 10 36 36 H 1.08998 * 109.50038 * 185.40990 * 14 13 12 37 37 H 1.09004 * 109.49464 * 65.31730 * 14 13 12 38 38 H 1.08994 * 109.46082 * 301.35235 * 15 14 13 39 39 H 0.97000 * 120.00335 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.49679 * 58.58090 * 24 15 14 41 41 H 1.09005 * 109.49687 * 178.67230 * 24 15 14 42 42 H 1.09002 * 109.58200 * 246.15468 * 25 12 10 43 43 H 1.08998 * 109.58832 * 6.57999 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6978 1.1577 5 6 3.2379 -1.3641 0.7647 6 6 2.9216 -1.8914 -0.6606 7 6 2.0539 -0.7482 -1.2411 8 1 2.6599 -0.0853 -1.8586 9 7 0.9392 -1.2948 -2.0188 10 6 1.1002 -1.5642 -3.3295 11 8 2.1939 -1.4397 -3.8460 12 7 0.0488 -1.9716 -4.0678 13 6 -1.2513 -2.2366 -3.4368 14 6 -1.7064 -3.6485 -3.8193 15 6 -1.7083 -3.7840 -5.3437 16 6 -2.1881 -5.1608 -5.7247 17 1 -2.4592 -5.8700 -4.9566 18 6 -2.2754 -5.5173 -7.0538 19 7 -2.6945 -6.7186 -7.3863 20 14 -1.7997 -4.2931 -8.3822 21 1 -0.3553 -4.4384 -8.6949 22 1 -2.5997 -4.5545 -9.6056 23 1 -2.0658 -2.9133 -7.9020 24 6 -0.2899 -3.5723 -5.8779 25 6 0.1811 -2.1595 -5.5191 26 1 -0.3634 -1.0275 0.0195 27 1 -0.3634 0.5306 0.8801 28 1 -0.3634 0.4969 -0.8995 29 1 4.0684 -0.6588 0.7355 30 1 3.4599 -2.1890 1.4417 31 1 2.3573 -2.8228 -0.6140 32 1 3.8348 -2.0201 -1.2415 33 1 0.0853 -1.4628 -1.5905 34 1 -1.9831 -1.5092 -3.7881 35 1 -1.1529 -2.1653 -2.3536 36 1 -2.7122 -3.8226 -3.4373 37 1 -1.0219 -4.3802 -3.3899 38 1 -2.3739 -3.0357 -5.7739 39 1 -2.7563 -6.9693 -8.3213 40 1 0.3810 -4.3048 -5.4289 41 1 -0.2876 -3.6922 -6.9614 42 1 -0.4339 -1.4257 -6.0401 43 1 1.2245 -2.0373 -5.8098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335766094.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:44 Heat of formation + Delta-G solvation = -84.028176 kcal Electronic energy + Delta-G solvation = -23383.229953 eV Core-core repulsion = 20041.919008 eV Total energy + Delta-G solvation = -3341.310945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.76871 -40.39222 -38.60688 -35.91952 -35.30991 -33.44072 -32.45865 -32.19949 -31.14816 -28.20052 -26.77841 -24.69290 -24.19511 -23.16774 -22.26966 -21.15906 -20.67235 -19.26778 -18.83883 -17.58936 -17.22743 -16.79306 -16.65235 -16.43594 -16.15397 -15.49248 -15.32803 -15.02600 -14.87723 -14.35097 -14.22480 -13.82659 -13.78503 -13.64236 -13.45153 -13.37745 -13.16180 -12.84394 -12.30326 -12.18889 -12.13437 -12.04786 -11.87492 -11.74969 -11.47608 -11.38643 -11.09807 -10.96879 -10.78760 -10.65255 -10.20307 -9.45583 -8.29213 -6.32944 1.32618 1.36246 1.46293 1.60814 2.08280 2.33128 2.79179 2.90996 3.06651 3.55552 3.71129 3.91867 3.99049 4.08260 4.10759 4.21431 4.22495 4.24515 4.36543 4.43228 4.52923 4.56306 4.69196 4.73659 4.81106 4.84099 4.88429 4.96586 4.99724 5.01975 5.03233 5.12031 5.22706 5.38732 5.49756 5.58462 5.67495 5.73300 5.88087 5.97172 6.31334 6.74827 6.91983 7.32838 7.50992 8.87661 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033376 B = 0.004003 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.715529 B = 6993.134727 C = 7187.842164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.070 3.930 3 H 0.095 0.905 4 O -0.388 6.388 5 C 0.051 3.949 6 C -0.168 4.168 7 C 0.131 3.869 8 H 0.092 0.908 9 N -0.727 5.727 10 C 0.704 3.296 11 O -0.633 6.633 12 N -0.623 5.623 13 C 0.116 3.884 14 C -0.110 4.110 15 C 0.014 3.986 16 C -0.518 4.518 17 H 0.032 0.968 18 C 0.009 3.991 19 N -0.953 5.953 20 Si 0.946 3.054 21 H -0.273 1.273 22 H -0.301 1.301 23 H -0.235 1.235 24 C -0.130 4.130 25 C 0.133 3.867 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.409 0.591 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.079 0.921 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.549 17.111 15.508 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 H 0.112 0.888 4 O -0.307 6.307 5 C -0.026 4.026 6 C -0.207 4.207 7 C 0.025 3.975 8 H 0.110 0.890 9 N -0.389 5.389 10 C 0.405 3.595 11 O -0.515 6.515 12 N -0.359 5.359 13 C -0.006 4.006 14 C -0.148 4.148 15 C -0.005 4.005 16 C -0.556 4.556 17 H 0.051 0.949 18 C -0.188 4.188 19 N -0.593 5.593 20 Si 0.773 3.227 21 H -0.199 1.199 22 H -0.229 1.229 23 H -0.158 1.158 24 C -0.168 4.168 25 C 0.010 3.990 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.252 0.748 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.155 17.117 15.236 24.323 hybrid contribution -0.107 -0.759 -1.141 1.374 sum 8.049 16.359 14.095 23.045 Atomic orbital electron populations 1.21947 0.92663 1.02925 1.03949 1.23019 0.96528 0.96043 0.83230 0.88750 1.88904 1.40656 1.68004 1.33142 1.23661 0.87447 0.97180 0.94278 1.23588 1.00890 0.98902 0.97304 1.22245 0.87500 0.95142 0.92621 0.88964 1.45470 1.16763 1.69411 1.07214 1.15999 0.83536 0.77910 0.82015 1.90847 1.25588 1.62230 1.72793 1.47327 1.10677 1.69832 1.08036 1.21869 0.83890 0.96969 0.97865 1.21738 1.01180 0.95746 0.96179 1.19103 0.92057 0.94974 0.94365 1.21416 1.42986 0.98949 0.92207 0.94943 1.25922 0.94735 0.96739 1.01364 1.70055 1.49401 1.21585 1.18290 0.85879 0.77637 0.81364 0.77804 1.19913 1.22892 1.15790 1.22228 0.99368 0.95940 0.99291 1.21461 1.02002 0.96337 0.79235 0.91864 0.90322 0.89784 0.90318 0.87505 0.91175 0.90074 0.74818 0.89177 0.88475 0.90478 0.93905 0.94563 0.92695 0.93775 0.93597 0.90311 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.26 71.98 0.59 -1.42 16 2 C 0.07 1.09 4.06 30.97 0.13 1.21 16 3 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 4 O -0.39 -7.11 11.19 -148.98 -1.67 -8.78 16 5 C 0.05 0.77 7.72 72.75 0.56 1.33 16 6 C -0.17 -3.26 6.90 31.98 0.22 -3.04 16 7 C 0.13 2.60 3.30 45.98 0.15 2.76 16 8 H 0.09 2.03 7.68 -2.39 -0.02 2.01 16 9 N -0.73 -16.29 4.46 -453.08 -2.02 -18.31 16 10 C 0.70 21.71 8.29 179.05 1.48 23.20 16 11 O -0.63 -24.18 15.49 -3.99 -0.06 -24.24 16 12 N -0.62 -18.98 2.97 -836.90 -2.49 -21.47 16 13 C 0.12 2.94 6.39 86.36 0.55 3.49 16 14 C -0.11 -3.79 5.30 30.67 0.16 -3.63 16 15 C 0.01 0.60 1.66 -11.51 -0.02 0.58 16 16 C -0.52 -28.70 9.14 25.60 0.23 -28.46 16 17 H 0.03 2.00 7.99 -2.91 -0.02 1.97 16 18 C 0.01 0.52 5.45 84.66 0.46 0.98 16 19 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 20 Si 0.95 44.09 24.38 68.60 1.67 45.76 16 21 H -0.27 -12.39 6.86 99.48 0.68 -11.71 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 23 H -0.23 -9.70 6.53 99.48 0.65 -9.06 16 24 C -0.13 -5.36 4.85 30.67 0.15 -5.22 16 25 C 0.13 4.55 6.44 86.36 0.56 5.10 16 26 H 0.06 0.82 6.83 -2.39 -0.02 0.81 16 27 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 0.95 7.83 -2.39 -0.02 0.93 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.53 8.06 -2.39 -0.02 1.51 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.41 7.39 3.34 -92.71 -0.31 7.08 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.10 1.80 5.65 -2.39 -0.01 1.79 16 36 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 39 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.05 1.99 3.25 -2.38 -0.01 1.98 16 42 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.08 2.79 6.99 -2.39 -0.02 2.77 16 Total: -1.00 -71.70 325.24 1.58 -70.12 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.61 Total: 19.29 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 5.23 Total: -3.12 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -4.21 Total: -99.03 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -1.73 Total: -33.02 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.67 Total: 45.76 kcal Total: -71.70 1.58 -70.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335766094.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.909 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds