Wall clock time and date at job start Tue Mar 31 2020 07:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.52575 * 2 1 4 4 C 1.53192 * 109.49806 * 120.07881 * 2 1 3 5 5 N 1.46931 * 108.77626 * 174.58446 * 4 2 1 6 6 C 1.34769 * 120.62852 * 126.37107 * 5 4 2 7 7 O 1.21584 * 120.00584 * 5.01564 * 6 5 4 8 8 N 1.34785 * 120.00038 * 185.01962 * 6 5 4 9 9 C 1.46500 * 120.00011 * 174.99806 * 8 6 5 10 10 C 1.53001 * 109.46830 * 185.07102 * 9 8 6 11 11 C 1.50706 * 115.54776 * 281.40221 * 10 9 8 12 12 H 1.07996 * 119.99979 * 146.98236 * 11 10 9 13 13 C 1.37876 * 120.00170 * 326.98938 * 11 10 9 14 14 N 1.31505 * 120.00345 * 164.09798 * 13 11 10 15 15 Si 1.86807 * 119.99682 * 344.09572 * 13 11 10 16 16 H 1.48500 * 109.46822 * 95.82144 * 15 13 11 17 17 H 1.48499 * 109.46937 * 215.82086 * 15 13 11 18 18 H 1.48499 * 109.47180 * 335.82244 * 15 13 11 19 19 C 1.52991 * 117.49976 * 135.69900 * 10 9 8 20 20 C 1.52996 * 117.50336 * 67.07213 * 10 9 8 21 21 C 1.46927 * 118.73801 * 306.64795 * 5 4 2 22 22 C 1.52761 * 109.01215 * 53.30561 * 21 5 4 23 23 C 1.53041 * 109.38195 * 305.59035 * 22 21 5 24 24 H 1.08997 * 109.45895 * 301.21843 * 23 22 21 25 25 O 1.42904 * 109.45943 * 181.25581 * 23 22 21 26 26 H 1.09005 * 109.46934 * 299.91706 * 1 2 3 27 27 H 1.08996 * 109.47460 * 59.91891 * 1 2 3 28 28 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.58721 * 54.80525 * 4 2 1 30 30 H 1.08998 * 109.58952 * 294.37240 * 4 2 1 31 31 H 0.97004 * 119.99362 * 354.99756 * 8 6 5 32 32 H 1.08994 * 109.47343 * 65.06602 * 9 8 6 33 33 H 1.08998 * 109.47050 * 305.06412 * 9 8 6 34 34 H 0.97001 * 120.00164 * 179.97438 * 14 13 11 35 35 H 1.08997 * 117.50381 * 359.97438 * 19 10 9 36 36 H 1.09007 * 117.49992 * 145.01930 * 19 10 9 37 37 H 1.09003 * 117.50004 * 214.98074 * 20 10 9 38 38 H 1.09008 * 117.49587 * 0.02562 * 20 10 9 39 39 H 1.08995 * 109.58582 * 173.14148 * 21 5 4 40 40 H 1.09002 * 109.58594 * 293.56913 * 21 5 4 41 41 H 1.08992 * 109.56798 * 185.55278 * 22 21 5 42 42 H 1.09001 * 109.38182 * 65.51248 * 22 21 5 43 43 H 0.96698 * 113.99648 * 59.93453 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3856 2.1779 7 8 3.7715 0.0232 3.2032 8 7 5.6228 -0.3951 2.0496 9 6 6.4631 0.1873 3.0988 10 6 7.9266 0.1615 2.6531 11 6 8.6222 -1.1691 2.7832 12 1 9.3837 -1.4521 2.0716 13 6 8.2864 -2.0252 3.8104 14 7 8.6463 -3.2889 3.7576 15 14 7.3200 -1.3898 5.2775 16 1 5.8747 -1.6634 5.0742 17 1 7.7848 -2.0746 6.5105 18 1 7.5325 0.0735 5.4139 19 6 8.7604 1.4215 2.8932 20 6 8.3220 1.0531 1.4744 21 6 4.1055 -1.4216 -0.0332 22 6 3.5708 -0.6951 -1.2661 23 6 2.0408 -0.7231 -1.2484 24 1 1.6967 -1.7573 -1.2352 25 8 1.5391 -0.0694 -2.4159 26 1 -0.3633 0.5126 0.8908 27 1 -0.3634 0.5151 -0.8892 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -1.7216 1.2980 30 1 1.7638 -0.1579 2.1389 31 1 6.0319 -0.7877 1.2625 32 1 6.3523 -0.3912 4.0160 33 1 6.1566 1.2175 3.2798 34 1 8.4103 -3.8911 4.4805 35 1 8.2665 2.2690 3.3682 36 1 9.8126 1.2883 3.1453 37 1 9.0855 0.6775 0.7931 38 1 7.5395 1.6585 1.0166 39 1 5.1895 -1.3160 0.0100 40 1 3.8412 -2.4774 -0.0915 41 1 3.9334 -1.1897 -2.1671 42 1 3.9159 0.3388 -1.2547 43 1 1.8233 -0.4750 -3.2464 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335974306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:04 Heat of formation + Delta-G solvation = -42.138255 kcal Electronic energy + Delta-G solvation = -23446.794700 eV Core-core repulsion = 20107.300239 eV Total energy + Delta-G solvation = -3339.494461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33353 -38.52843 -37.11624 -35.66536 -33.91589 -32.78248 -32.29739 -31.24467 -27.60079 -26.44604 -25.29441 -24.16954 -22.60633 -21.55019 -20.52191 -19.56608 -19.17620 -18.08402 -17.43903 -16.48839 -15.95529 -15.72059 -15.23940 -15.00635 -14.43425 -14.28186 -13.90044 -13.64022 -13.48842 -13.27458 -12.96320 -12.85812 -12.44556 -12.09654 -12.04985 -11.99430 -11.76479 -11.46604 -11.11376 -10.98135 -10.64318 -10.46843 -10.45296 -10.13015 -10.07353 -9.78477 -9.47221 -9.38596 -9.02407 -8.63075 -8.41528 -8.05623 -6.25950 -4.18447 2.89620 3.31604 3.40862 3.42965 3.56545 3.98566 4.19743 4.33283 4.50350 4.56139 4.77032 4.83779 4.88912 5.11123 5.26274 5.29953 5.32339 5.43552 5.49857 5.58205 5.65416 5.66859 5.75569 5.87755 5.89954 5.93981 6.06599 6.12923 6.17597 6.19481 6.40581 6.45618 6.62353 6.67331 6.85081 7.05141 7.13182 7.26672 7.40975 7.63719 8.36811 8.40906 8.79450 9.00995 9.40152 10.85083 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.004928 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.975962 B = 5680.215813 C = 5987.350410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.080 0.920 4 C 0.137 3.863 5 N -0.635 5.635 6 C 0.705 3.295 7 O -0.599 6.599 8 N -0.721 5.721 9 C 0.166 3.834 10 C -0.006 4.006 11 C -0.492 4.492 12 H 0.079 0.921 13 C 0.083 3.917 14 N -0.882 5.882 15 Si 0.885 3.115 16 H -0.275 1.275 17 H -0.299 1.299 18 H -0.264 1.264 19 C -0.199 4.199 20 C -0.188 4.188 21 C 0.113 3.887 22 C -0.167 4.167 23 C 0.111 3.889 24 H 0.057 0.943 25 O -0.565 6.565 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.401 0.599 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.267 0.733 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.707 3.793 -11.478 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.098 0.902 4 C 0.013 3.987 5 N -0.373 5.373 6 C 0.406 3.594 7 O -0.478 6.478 8 N -0.377 5.377 9 C 0.043 3.957 10 C -0.007 4.007 11 C -0.528 4.528 12 H 0.097 0.903 13 C -0.121 4.121 14 N -0.517 5.517 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.227 1.227 18 H -0.189 1.189 19 C -0.238 4.238 20 C -0.225 4.225 21 C -0.011 4.011 22 C -0.206 4.206 23 C 0.053 3.947 24 H 0.074 0.926 25 O -0.371 6.371 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.238 0.762 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.300 4.290 -10.157 17.276 hybrid contribution 0.138 -0.357 -0.029 0.384 sum -13.162 3.933 -10.186 17.101 Atomic orbital electron populations 1.21673 0.93852 1.01929 1.02281 1.21534 0.96649 1.00726 0.92964 0.90154 1.21464 0.78570 1.00453 0.98185 1.47229 1.06168 1.65731 1.18193 1.15896 0.81871 0.78639 0.82993 1.90864 1.73591 1.54965 1.28349 1.45237 1.03547 1.63618 1.25261 1.21185 0.89075 0.96133 0.89309 1.19553 0.90255 0.92398 0.98516 1.20270 1.22085 0.96971 1.13473 0.90283 1.24961 0.95029 0.94147 0.98009 1.69933 1.46127 1.03142 1.32485 0.86897 0.79749 0.79669 0.82035 1.20246 1.22722 1.18936 1.23128 1.01117 1.00551 0.98960 1.22780 1.03151 1.05291 0.91327 1.21477 0.98771 0.97054 0.83798 1.22601 0.96727 1.02682 0.98572 1.21800 0.91878 0.95366 0.85689 0.92554 1.86519 1.75657 1.59008 1.15892 0.92456 0.91584 0.92741 0.91781 0.88325 0.76161 0.92804 0.92950 0.92326 0.91168 0.89310 0.89762 0.90939 0.89384 0.91180 0.90344 0.90514 0.77743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.04 37.16 0.34 -0.99 16 2 C -0.10 -1.10 2.62 -90.50 -0.24 -1.34 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.14 1.79 5.71 -3.71 -0.02 1.77 16 5 N -0.63 -9.73 2.98 -178.76 -0.53 -10.26 16 6 C 0.70 14.12 8.30 -86.92 -0.72 13.40 16 7 O -0.60 -14.13 15.78 5.29 0.08 -14.05 16 8 N -0.72 -14.60 5.45 -65.23 -0.36 -14.95 16 9 C 0.17 3.77 4.62 -4.04 -0.02 3.75 16 10 C -0.01 -0.13 1.30 -155.66 -0.20 -0.33 16 11 C -0.49 -13.09 9.56 -34.44 -0.33 -13.41 16 12 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.32 5.40 -17.82 -0.10 2.22 16 14 N -0.88 -25.85 13.96 55.43 0.77 -25.07 16 15 Si 0.88 22.64 24.32 -169.99 -4.13 18.51 16 16 H -0.27 -7.32 6.87 56.52 0.39 -6.93 16 17 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 18 H -0.26 -6.53 6.81 56.52 0.38 -6.15 16 19 C -0.20 -4.07 9.88 -26.74 -0.26 -4.33 16 20 C -0.19 -3.62 9.93 -26.73 -0.27 -3.89 16 21 C 0.11 1.35 6.40 -3.93 -0.03 1.33 16 22 C -0.17 -1.61 5.69 -26.83 -0.15 -1.76 16 23 C 0.11 1.07 2.88 -26.69 -0.08 0.99 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 O -0.57 -5.23 12.60 -35.23 -0.44 -5.67 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.65 7.65 -51.93 -0.40 0.25 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.46 7.03 -51.93 -0.37 1.10 16 31 H 0.40 7.40 5.94 -40.82 -0.24 7.16 16 32 H 0.05 1.37 1.79 -51.93 -0.09 1.28 16 33 H 0.05 1.15 7.96 -51.93 -0.41 0.74 16 34 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 36 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 39 H 0.09 1.10 5.57 -51.93 -0.29 0.81 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.38 1.93 9.08 45.56 0.41 2.34 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -32.71 336.24 -7.66 -40.37 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.05 Total: 8.66 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.07 Total: -2.60 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.11 Total: -50.29 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.36 Total: -19.72 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.13 Total: 18.51 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.71 -7.66 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335974306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.767 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds