Wall clock time and date at job start Tue Mar 31 2020 07:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.86621 * 2 1 4 4 O 1.43741 * 109.87491 * 238.84377 * 2 1 3 5 5 C 1.44380 * 106.97261 * 214.05830 * 4 2 1 6 6 C 1.54999 * 103.49084 * 40.06261 * 5 4 2 7 7 C 1.54100 * 109.88187 * 121.00872 * 2 1 3 8 8 H 1.09004 * 110.48458 * 2.77694 * 7 2 1 9 9 N 1.46500 * 110.48835 * 240.12992 * 7 2 1 10 10 C 1.34777 * 119.99788 * 155.00018 * 9 7 2 11 11 O 1.21584 * 120.00143 * 355.01098 * 10 9 7 12 12 N 1.34772 * 119.99997 * 175.01946 * 10 9 7 13 13 C 1.46932 * 120.62835 * 4.93487 * 12 10 9 14 14 C 1.53624 * 108.53944 * 126.37678 * 13 12 10 15 15 C 1.53042 * 109.24542 * 54.85619 * 14 13 12 16 16 C 1.50698 * 109.45841 * 178.49299 * 15 14 13 17 17 H 1.07997 * 120.00029 * 120.07358 * 16 15 14 18 18 C 1.37872 * 120.00172 * 300.06224 * 16 15 14 19 19 N 1.31517 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00277 * 180.02562 * 18 16 15 21 21 H 1.48507 * 109.47041 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47498 * 120.00336 * 20 18 16 23 23 H 1.48504 * 109.47314 * 240.00486 * 20 18 16 24 24 C 1.53042 * 109.53707 * 298.50941 * 15 14 13 25 25 C 1.46928 * 120.63190 * 185.22255 * 12 10 9 26 26 H 1.09000 * 109.46780 * 298.98859 * 1 2 3 27 27 H 1.08997 * 109.46844 * 178.99207 * 1 2 3 28 28 H 1.08998 * 109.47502 * 58.98656 * 1 2 3 29 29 H 1.08998 * 110.61986 * 281.56196 * 5 4 2 30 30 H 1.09004 * 110.75616 * 158.62775 * 5 4 2 31 31 H 1.08997 * 110.90662 * 204.77712 * 6 5 4 32 32 H 1.09000 * 110.90832 * 81.17120 * 6 5 4 33 33 H 0.96998 * 119.99811 * 335.00211 * 9 7 2 34 34 H 1.09004 * 109.58522 * 246.20404 * 13 12 10 35 35 H 1.08993 * 109.58939 * 6.63277 * 13 12 10 36 36 H 1.09002 * 109.63171 * 294.86578 * 14 13 12 37 37 H 1.09002 * 109.43292 * 174.72738 * 14 13 12 38 38 H 1.08994 * 109.46077 * 58.53145 * 15 14 13 39 39 H 0.96992 * 120.00408 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.50179 * 301.41758 * 24 15 14 41 41 H 1.08995 * 109.50072 * 181.31410 * 24 15 14 42 42 H 1.08995 * 109.58445 * 353.36725 * 25 12 10 43 43 H 1.09001 * 109.58441 * 113.65108 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 8 2.0187 -0.6994 -1.1568 5 6 3.2379 -1.3650 -0.7630 6 6 2.9196 -1.8906 0.6600 7 6 2.0541 -0.7466 1.2420 8 1 1.2247 -1.1524 1.8213 9 7 2.8712 0.1447 2.0692 10 6 3.0084 -0.0973 3.3879 11 8 2.3826 -1.0004 3.9086 12 7 3.8390 0.6619 4.1296 13 6 4.5189 1.8232 3.5396 14 6 4.2260 3.0548 4.4098 15 6 4.6298 2.7583 5.8559 16 6 4.3789 3.9763 6.7070 17 1 3.6982 3.9197 7.5435 18 6 5.0186 5.1630 6.4179 19 7 5.8473 5.2321 5.3991 20 14 4.7081 6.6727 7.4734 21 1 3.7419 6.3344 8.5492 22 1 5.9861 7.1237 8.0804 23 1 4.1498 7.7601 6.6300 24 6 3.8030 1.5855 6.3879 25 6 4.0867 0.3404 5.5417 26 1 -0.3633 0.4981 0.8989 27 1 -0.3633 -1.0275 -0.0181 28 1 -0.3634 0.5295 -0.8807 29 1 4.0684 -0.6597 -0.7348 30 1 3.4612 -2.1924 -1.4367 31 1 3.8332 -2.0208 1.2399 32 1 2.3540 -2.8212 0.6135 33 1 3.3134 0.9090 1.6677 34 1 5.5932 1.6410 3.5091 35 1 4.1458 1.9908 2.5293 36 1 3.1617 3.2870 4.3696 37 1 4.7986 3.9051 4.0393 38 1 5.6886 2.5021 5.8920 39 1 6.2976 6.0668 5.1959 40 1 2.7427 1.8314 6.3290 41 1 4.0745 1.3899 7.4252 42 1 3.4283 -0.4706 5.8527 43 1 5.1258 0.0375 5.6706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035995.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:49 Heat of formation + Delta-G solvation = -78.900958 kcal Electronic energy + Delta-G solvation = -23156.809003 eV Core-core repulsion = 19815.720392 eV Total energy + Delta-G solvation = -3341.088612 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49089 -39.24813 -36.88635 -34.52158 -33.52821 -31.81806 -31.48924 -30.38029 -29.88267 -26.40038 -25.41724 -23.15109 -22.45147 -22.33273 -21.12557 -20.10787 -18.87892 -17.78488 -16.87673 -16.29770 -16.09979 -15.51082 -15.44295 -14.88922 -14.58203 -14.09911 -13.71264 -13.36297 -13.22060 -13.03804 -12.69108 -12.63989 -12.54979 -12.38763 -11.97993 -11.71318 -11.48765 -11.37865 -11.32961 -11.00722 -10.98334 -10.63076 -10.40581 -10.19453 -9.95397 -9.77640 -9.58991 -9.18225 -9.03279 -8.94873 -8.40927 -7.94330 -6.06179 -4.12098 2.90462 3.25235 3.33979 3.38191 3.46552 3.63515 4.17315 4.38747 4.43054 4.51510 4.81247 4.87417 5.02272 5.15975 5.23286 5.38805 5.49633 5.51433 5.56162 5.71317 5.78356 5.81704 5.84001 5.91649 5.97539 6.04432 6.15106 6.22024 6.43997 6.49411 6.65124 6.74056 6.83171 6.96764 7.11015 7.18698 7.40129 7.64378 7.89193 8.00324 8.24756 8.37723 8.88288 8.91781 9.53335 10.99347 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.003837 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.604403 B = 7296.145110 C = 7684.550542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 H 0.074 0.926 4 O -0.372 6.372 5 C 0.046 3.954 6 C -0.167 4.167 7 C 0.134 3.866 8 H 0.106 0.894 9 N -0.744 5.744 10 C 0.707 3.293 11 O -0.603 6.603 12 N -0.617 5.617 13 C 0.110 3.890 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.124 4.124 25 C 0.129 3.871 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -10.225 -11.369 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 H 0.092 0.908 4 O -0.292 6.292 5 C -0.031 4.031 6 C -0.206 4.206 7 C 0.027 3.973 8 H 0.124 0.876 9 N -0.403 5.403 10 C 0.409 3.591 11 O -0.483 6.483 12 N -0.353 5.353 13 C -0.013 4.013 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.549 4.549 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.162 4.162 25 C 0.007 3.993 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.234 0.766 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.788 -10.752 -11.265 16.292 hybrid contribution 0.328 1.397 0.494 1.517 sum -4.460 -9.355 -10.771 14.947 Atomic orbital electron populations 1.21889 0.92806 1.03088 1.02797 1.23002 0.95845 0.95932 0.84383 0.90823 1.88901 1.39815 1.67667 1.32769 1.23572 0.87622 0.96456 0.95423 1.23572 1.01490 0.99045 0.96474 1.22132 0.94086 0.89670 0.91394 0.87562 1.45354 1.55376 1.32070 1.07458 1.15831 0.80216 0.82122 0.80968 1.90851 1.50561 1.35233 1.71626 1.47435 1.46633 1.29550 1.11727 1.21995 0.96357 0.86929 0.96017 1.22095 1.00424 0.95881 0.97743 1.18628 0.94788 0.91902 0.91660 1.21257 1.25717 0.94867 1.13040 0.92625 1.24956 0.94968 0.98783 0.95259 1.69839 1.28916 1.26470 1.27957 0.86564 0.78040 0.83020 0.80550 1.19817 1.21043 1.21074 1.22019 1.00939 0.95236 0.98019 1.21582 1.00179 0.98764 0.78813 0.90861 0.91634 0.91610 0.92099 0.88874 0.89664 0.89753 0.76611 0.91944 0.92624 0.94243 0.87837 0.95449 0.93049 0.92944 0.92130 0.90268 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.36 37.16 0.35 -1.06 16 2 C 0.07 0.72 3.84 -26.16 -0.10 0.62 16 3 H 0.07 0.77 7.64 -51.93 -0.40 0.37 16 4 O -0.37 -4.25 11.19 -35.23 -0.39 -4.65 16 5 C 0.05 0.43 7.72 38.21 0.29 0.73 16 6 C -0.17 -1.76 6.88 -24.72 -0.17 -1.93 16 7 C 0.13 1.61 3.07 -66.40 -0.20 1.41 16 8 H 0.11 1.44 7.05 -51.93 -0.37 1.07 16 9 N -0.74 -10.18 4.99 -57.18 -0.29 -10.46 16 10 C 0.71 12.38 8.29 -86.92 -0.72 11.66 16 11 O -0.60 -12.31 15.38 5.29 0.08 -12.23 16 12 N -0.62 -10.98 2.97 -178.23 -0.53 -11.50 16 13 C 0.11 1.89 6.42 -3.48 -0.02 1.87 16 14 C -0.12 -2.64 5.17 -26.39 -0.14 -2.78 16 15 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 16 C -0.51 -13.46 8.56 -34.44 -0.29 -13.76 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -24.12 11.30 55.43 0.63 -23.49 16 20 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.12 -2.52 5.30 -26.61 -0.14 -2.66 16 25 C 0.13 2.36 6.44 -3.71 -0.02 2.33 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 4.84 5.83 -40.82 -0.24 4.60 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.80 5.64 -51.93 -0.29 0.51 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 2.48 6.03 -51.93 -0.31 2.17 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.08 1.45 6.99 -51.93 -0.36 1.09 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -29.49 336.10 -8.91 -38.40 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -7.00 Total: 4.33 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.46 Total: -1.10 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.19 Total: -45.46 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.31 Total: -16.88 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.49 -8.91 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035995.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.499 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds