Wall clock time and date at job start Tue Mar 31 2020 07:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.33075 * 2 1 4 4 O 1.44419 * 110.46667 * 237.68520 * 2 1 3 5 5 C 1.44425 * 105.27562 * 200.60927 * 4 2 1 6 6 C 1.54481 * 104.80277 * 40.51306 * 5 4 2 7 7 C 1.54475 * 110.37229 * 122.24806 * 2 1 3 8 8 H 1.08999 * 110.51911 * 261.70695 * 7 2 1 9 9 N 1.46503 * 110.51033 * 24.27682 * 7 2 1 10 10 C 1.34781 * 120.00281 * 204.99650 * 9 7 2 11 11 O 1.21586 * 119.99552 * 5.07321 * 10 9 7 12 12 N 1.34770 * 120.00440 * 185.07452 * 10 9 7 13 13 C 1.46918 * 120.63361 * 174.96877 * 12 10 9 14 14 C 1.53196 * 108.77508 * 233.58425 * 13 12 10 15 15 C 1.53038 * 109.31591 * 305.36472 * 14 13 12 16 16 C 1.50698 * 109.46109 * 181.38235 * 15 14 13 17 17 H 1.08003 * 120.00195 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99993 * 180.27494 * 16 15 14 19 19 N 1.31516 * 120.00058 * 179.72661 * 18 16 15 20 20 Si 1.86802 * 119.99869 * 359.72705 * 18 16 15 21 21 H 1.48504 * 109.47235 * 89.99944 * 20 18 16 22 22 H 1.48501 * 109.47297 * 209.99898 * 20 18 16 23 23 H 1.48499 * 109.47089 * 329.99731 * 20 18 16 24 24 C 1.53045 * 109.53505 * 61.36413 * 15 14 13 25 25 C 1.46936 * 120.62616 * 354.94732 * 12 10 9 26 26 H 1.08997 * 109.47088 * 297.74938 * 1 2 3 27 27 H 1.09004 * 109.46957 * 57.74902 * 1 2 3 28 28 H 1.08996 * 109.46944 * 177.75226 * 1 2 3 29 29 H 1.08997 * 110.37616 * 159.34390 * 5 4 2 30 30 H 1.09003 * 110.37463 * 281.56901 * 5 4 2 31 31 H 1.08999 * 110.51061 * 217.37569 * 6 5 4 32 32 H 1.08991 * 110.50924 * 94.66632 * 6 5 4 33 33 H 0.97005 * 119.99992 * 25.00110 * 9 7 2 34 34 H 1.08996 * 109.58886 * 113.80104 * 13 12 10 35 35 H 1.08996 * 109.58943 * 353.37073 * 13 12 10 36 36 H 1.09001 * 109.49875 * 185.40951 * 14 13 12 37 37 H 1.09004 * 109.52373 * 65.33182 * 14 13 12 38 38 H 1.08998 * 109.45812 * 301.35588 * 15 14 13 39 39 H 0.96997 * 119.99859 * 179.97438 * 19 18 16 40 40 H 1.09003 * 109.49827 * 58.58823 * 24 15 14 41 41 H 1.09001 * 109.49302 * 178.68451 * 24 15 14 42 42 H 1.09001 * 109.57951 * 246.19779 * 25 12 10 43 43 H 1.09003 * 109.58645 * 6.62089 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0350 -0.7233 -1.1435 5 6 3.3898 -1.0846 -0.7972 6 6 3.3194 -1.5027 0.6882 7 6 2.0678 -0.7727 1.2247 8 1 2.3388 -0.0821 2.0233 9 7 1.0739 -1.7389 1.6990 10 6 1.0882 -2.1448 2.9841 11 8 1.8657 -1.6415 3.7719 12 7 0.2409 -3.1085 3.3960 13 6 0.3184 -3.6389 4.7639 14 6 0.4418 -5.1644 4.6950 15 6 -0.7145 -5.7289 3.8666 16 6 -0.6154 -7.2320 3.8250 17 1 0.1911 -7.7344 4.3383 18 6 -1.5515 -7.9656 3.1274 19 7 -1.4619 -9.2771 3.0867 20 14 -2.9469 -7.0966 2.2402 21 1 -2.5276 -6.7766 0.8519 22 1 -4.1388 -7.9817 2.2057 23 1 -3.2836 -5.8408 2.9575 24 6 -0.6425 -5.1736 2.4423 25 6 -0.7783 -3.6483 2.4856 26 1 -0.3633 0.4785 0.9095 27 1 -0.3633 0.5484 -0.8692 28 1 -0.3633 -1.0268 -0.0403 29 1 3.7285 -1.9194 -1.4107 30 1 4.0541 -0.2293 -0.9214 31 1 4.2115 -1.1727 1.2206 32 1 3.1987 -2.5824 0.7757 33 1 0.4055 -2.0867 1.0880 34 1 -0.5846 -3.3699 5.3119 35 1 1.1914 -3.2241 5.2678 36 1 0.4036 -5.5784 5.7026 37 1 1.3892 -5.4324 4.2273 38 1 -1.6620 -5.4398 4.3214 39 1 -2.1207 -9.7931 2.5962 40 1 0.3151 -5.4411 1.9955 41 1 -1.4527 -5.5942 1.8465 42 1 -1.7707 -3.3800 2.8479 43 1 -0.6289 -3.2395 1.4862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336035997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:53 Heat of formation + Delta-G solvation = -64.593373 kcal Electronic energy + Delta-G solvation = -23524.494616 eV Core-core repulsion = 20184.026428 eV Total energy + Delta-G solvation = -3340.468188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.63980 -39.34138 -37.15131 -34.67773 -33.54360 -31.77128 -31.70675 -30.83387 -30.04927 -26.60444 -25.82820 -23.04428 -22.71805 -22.28623 -21.10641 -20.09091 -19.27614 -17.96093 -16.75458 -16.67739 -16.10464 -15.74622 -15.49661 -15.12863 -14.87960 -14.38972 -13.91200 -13.48820 -13.37599 -13.03321 -12.87139 -12.71561 -12.56404 -12.55996 -12.24826 -12.11431 -11.85334 -11.45086 -11.18388 -11.13714 -11.04681 -10.74612 -10.26544 -10.19685 -10.09705 -9.82155 -9.74287 -9.35509 -9.12080 -9.05241 -8.59251 -8.11608 -6.11713 -4.11025 2.79753 3.19016 3.29606 3.33621 3.37185 3.60156 3.99343 4.34643 4.39486 4.44552 4.76152 4.87432 4.91990 5.10263 5.13681 5.29433 5.30153 5.37345 5.49446 5.54729 5.60320 5.62711 5.69646 5.82081 5.83329 5.85985 5.90294 5.97827 6.19039 6.28179 6.48929 6.58032 6.62002 6.63758 6.70404 6.85073 7.15369 7.22016 7.46664 7.70906 8.11147 8.48078 8.76814 8.92898 9.50199 11.01747 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.004752 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.011133 B = 5890.293745 C = 6367.361342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 H 0.082 0.918 4 O -0.371 6.371 5 C 0.046 3.954 6 C -0.169 4.169 7 C 0.135 3.865 8 H 0.105 0.895 9 N -0.741 5.741 10 C 0.708 3.292 11 O -0.600 6.600 12 N -0.618 5.618 13 C 0.127 3.873 14 C -0.114 4.114 15 C 0.016 3.984 16 C -0.513 4.513 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.901 5.901 20 Si 0.886 3.114 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.265 1.265 24 C -0.135 4.135 25 C 0.108 3.892 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.399 0.601 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 18.688 -6.547 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.004 3.996 3 H 0.100 0.900 4 O -0.290 6.290 5 C -0.031 4.031 6 C -0.209 4.209 7 C 0.028 3.972 8 H 0.123 0.877 9 N -0.401 5.401 10 C 0.410 3.590 11 O -0.480 6.480 12 N -0.355 5.355 13 C 0.005 3.995 14 C -0.152 4.152 15 C -0.003 4.003 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.225 1.225 23 H -0.190 1.190 24 C -0.173 4.173 25 C -0.015 4.015 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.238 0.762 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.941 18.812 -6.220 20.421 hybrid contribution -0.977 -0.006 -0.826 1.279 sum 3.964 18.806 -7.047 20.471 Atomic orbital electron populations 1.21748 0.92849 1.02855 1.02825 1.23281 0.95958 0.95566 0.84760 0.90044 1.89169 1.27326 1.74571 1.37966 1.23412 0.84416 1.00004 0.95284 1.23453 0.98873 1.02657 0.95882 1.22097 0.87679 0.90693 0.96687 0.87739 1.45440 1.36139 1.48323 1.10185 1.15826 0.81064 0.79974 0.82141 1.90858 1.43678 1.59805 1.53621 1.47320 1.34886 1.38702 1.14553 1.21651 1.01929 0.95203 0.80765 1.21849 1.00319 0.91961 1.01090 1.19116 0.94480 0.96432 0.90315 1.21056 1.12607 0.88771 1.32654 0.90832 1.25048 0.97508 0.94692 0.96077 1.69899 1.36153 1.05294 1.42532 0.86868 0.81867 0.79520 0.80098 1.20594 1.22454 1.18996 1.22382 1.01813 0.91395 1.01716 1.21789 0.91151 0.96643 0.91910 0.90679 0.91490 0.91868 0.88902 0.92119 0.89769 0.89796 0.76189 0.92231 0.89794 0.91273 0.92357 0.95370 0.92651 0.91639 0.92471 0.91707 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.91 37.16 0.33 -0.94 16 2 C 0.06 0.60 3.87 -25.96 -0.10 0.50 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 4 O -0.37 -4.13 11.35 -35.23 -0.40 -4.53 16 5 C 0.05 0.42 7.63 37.93 0.29 0.71 16 6 C -0.17 -1.79 6.88 -25.16 -0.17 -1.96 16 7 C 0.14 1.52 3.38 -66.36 -0.22 1.30 16 8 H 0.10 1.25 7.49 -51.93 -0.39 0.86 16 9 N -0.74 -9.74 4.32 -57.14 -0.25 -9.98 16 10 C 0.71 11.74 8.30 -86.92 -0.72 11.02 16 11 O -0.60 -11.61 15.40 5.29 0.08 -11.53 16 12 N -0.62 -10.34 2.97 -178.50 -0.53 -10.87 16 13 C 0.13 2.17 6.42 -3.71 -0.02 2.14 16 14 C -0.11 -2.20 5.30 -26.61 -0.14 -2.34 16 15 C 0.02 0.34 1.66 -91.73 -0.15 0.19 16 16 C -0.51 -13.93 9.14 -34.44 -0.31 -14.25 16 17 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 18 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 19 N -0.90 -27.09 13.96 55.43 0.77 -26.32 16 20 Si 0.89 20.98 24.38 -169.99 -4.14 16.83 16 21 H -0.28 -6.37 6.85 56.52 0.39 -5.98 16 22 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 24 C -0.13 -2.69 4.85 -26.61 -0.13 -2.82 16 25 C 0.11 1.73 6.43 -3.71 -0.02 1.71 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.59 6.27 -51.93 -0.33 0.26 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.04 7.96 -51.93 -0.41 0.62 16 33 H 0.40 4.82 4.01 -40.82 -0.16 4.66 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.44 7.03 -51.93 -0.37 1.08 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.64 7.21 -51.93 -0.37 0.26 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.20 3.22 -51.93 -0.17 1.04 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.83 5.57 -51.93 -0.29 0.54 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -31.73 325.70 -7.78 -39.51 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.74 Total: 4.91 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.48 Total: -2.93 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.00 Total: -47.17 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.32 Total: -16.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.83 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.73 -7.78 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336035997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.083 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds