Wall clock time and date at job start Tue Mar 31 2020 06:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47154 * 2 1 4 4 C 1.50703 * 109.46912 * 240.00363 * 2 1 3 5 5 H 1.08004 * 119.99381 * 240.00023 * 4 2 1 6 6 C 1.37869 * 120.00532 * 59.99646 * 4 2 1 7 7 N 1.31511 * 120.00251 * 179.97438 * 6 4 2 8 8 Si 1.86809 * 119.99974 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47049 * 270.00121 * 8 6 4 10 10 H 1.48503 * 109.46793 * 29.99748 * 8 6 4 11 11 H 1.48500 * 109.46893 * 149.99569 * 8 6 4 12 12 N 1.46490 * 109.47197 * 119.99964 * 2 1 3 13 13 C 1.46509 * 120.00008 * 59.99724 * 12 2 1 14 14 C 1.34781 * 120.00283 * 240.00134 * 12 2 1 15 15 O 1.21349 * 119.99536 * 4.72467 * 14 12 2 16 16 C 1.49452 * 120.00003 * 184.72728 * 14 12 2 17 17 O 1.21350 * 119.99760 * 4.39105 * 16 14 12 18 18 N 1.34774 * 119.99661 * 184.38583 * 16 14 12 19 19 C 1.46929 * 120.63213 * 352.10210 * 18 16 14 20 20 C 1.52759 * 109.00249 * 233.58087 * 19 18 16 21 21 C 1.53045 * 109.38593 * 305.58395 * 20 19 18 22 22 C 1.53038 * 109.53569 * 61.24247 * 21 20 19 23 23 H 1.09003 * 109.49725 * 58.58481 * 22 21 20 24 24 C 1.52999 * 109.49576 * 178.68429 * 22 21 20 25 25 C 1.46928 * 120.62748 * 172.37511 * 18 16 14 26 26 H 1.08996 * 109.47577 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47252 * 300.00262 * 1 2 3 28 28 H 1.09008 * 109.47394 * 59.99854 * 1 2 3 29 29 H 0.97005 * 120.00362 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.46815 * 96.06375 * 13 12 2 31 31 H 1.08992 * 109.47435 * 216.06690 * 13 12 2 32 32 H 1.08998 * 109.46706 * 336.07083 * 13 12 2 33 33 H 1.08997 * 109.58413 * 353.41412 * 19 18 16 34 34 H 1.08997 * 109.58476 * 113.83881 * 19 18 16 35 35 H 1.09001 * 109.56214 * 185.55341 * 20 19 18 36 36 H 1.08995 * 109.36138 * 65.50151 * 20 19 18 37 37 H 1.09001 * 109.45994 * 301.22376 * 21 20 19 38 38 H 1.08998 * 109.45919 * 181.26613 * 21 20 19 39 39 H 1.08998 * 109.46840 * 179.84142 * 24 22 21 40 40 H 1.09003 * 109.47318 * 299.83680 * 24 22 21 41 41 H 1.09000 * 109.47376 * 59.84191 * 24 22 21 42 42 H 1.09004 * 109.58785 * 246.15904 * 25 18 16 43 43 H 1.08995 * 109.58804 * 6.43922 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 2.1380 -0.8590 -3.5565 8 14 0.6258 1.2799 -2.6542 9 1 -0.8021 0.8745 -2.6993 10 1 0.8491 2.1773 -1.4923 11 1 0.9772 1.9954 -3.9071 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0158 1.1483 1.9365 16 6 3.3782 -0.7673 3.2478 17 8 3.2220 -1.9662 3.3515 18 7 4.0793 -0.0956 4.1825 19 6 4.4248 1.3190 3.9862 20 6 5.9325 1.4916 4.1606 21 6 6.3554 0.9233 5.5172 22 6 6.0292 -0.5710 5.5703 23 1 6.5476 -1.0854 4.7611 24 6 6.4821 -1.1451 6.9142 25 6 4.5178 -0.7656 5.4144 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.9033 -0.5279 -4.4376 30 1 2.4679 -2.7351 1.0669 31 1 1.5182 -2.2594 2.4952 32 1 0.7437 -2.3285 0.8941 33 1 4.1365 1.6295 2.9820 34 1 3.9022 1.9284 4.7235 35 1 6.1864 2.5506 4.1147 36 1 6.4518 0.9578 3.3647 37 1 5.8172 1.4409 6.3114 38 1 7.4274 1.0661 5.6525 39 1 6.2471 -2.2087 6.9526 40 1 7.5576 -1.0064 7.0247 41 1 5.9643 -0.6291 7.7228 42 1 4.0030 -0.3295 6.2706 43 1 4.2885 -1.8294 5.3532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336195686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:43 Heat of formation + Delta-G solvation = -45.892742 kcal Electronic energy + Delta-G solvation = -23480.066418 eV Core-core repulsion = 20140.409149 eV Total energy + Delta-G solvation = -3339.657268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72068 -38.72275 -37.53147 -35.94015 -33.66611 -32.68959 -31.89917 -30.45748 -27.26957 -26.60511 -25.78733 -25.15245 -23.50163 -22.31578 -20.86244 -19.79007 -18.75725 -16.98138 -16.77827 -16.33380 -15.83266 -15.73515 -15.20295 -14.80507 -14.46351 -14.20996 -14.06356 -13.44246 -13.38310 -12.99230 -12.91494 -12.70497 -12.39636 -12.27556 -12.26551 -12.00434 -11.82177 -11.67508 -11.27520 -11.15967 -11.10387 -10.96434 -10.77481 -10.52289 -10.19009 -10.06321 -9.67713 -9.40412 -8.69257 -8.64385 -8.49224 -7.89456 -6.18836 -4.21050 1.83841 2.68675 3.20200 3.33464 3.34705 3.62804 3.86835 4.30217 4.50284 4.64249 4.68527 4.77229 5.01707 5.13195 5.23407 5.33096 5.37180 5.48386 5.56570 5.62033 5.68533 5.84961 5.85277 5.93403 5.97455 6.03896 6.12933 6.16593 6.23825 6.27379 6.29948 6.38118 6.48223 6.60225 6.77580 6.92858 7.21954 7.30586 7.51683 7.81800 8.14657 8.35856 8.56786 8.83411 9.40131 10.93631 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029446 B = 0.004391 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.667221 B = 6374.478359 C = 6694.805763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.226 3.774 3 H 0.066 0.934 4 C -0.531 4.531 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.262 1.262 11 H -0.293 1.293 12 N -0.546 5.546 13 C 0.085 3.915 14 C 0.498 3.502 15 O -0.530 6.530 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.587 5.587 19 C 0.052 3.948 20 C -0.134 4.134 21 C -0.116 4.116 22 C -0.107 4.107 23 H 0.075 0.925 24 C -0.144 4.144 25 C 0.112 3.888 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.267 0.733 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.593 2.329 18.668 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.125 3.875 3 H 0.084 0.916 4 C -0.570 4.570 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.220 1.220 12 N -0.274 5.274 13 C -0.058 4.058 14 C 0.281 3.719 15 O -0.411 6.411 16 C 0.293 3.707 17 O -0.397 6.397 18 N -0.320 5.320 19 C -0.069 4.069 20 C -0.172 4.172 21 C -0.153 4.153 22 C -0.127 4.127 23 H 0.093 0.907 24 C -0.202 4.202 25 C -0.010 4.010 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.176 0.824 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.582 2.260 18.400 19.096 hybrid contribution -0.453 0.656 -0.176 0.816 sum 4.129 2.915 18.223 18.911 Atomic orbital electron populations 1.22469 0.98531 1.01474 0.99535 1.19503 0.90487 0.95225 0.82305 0.91620 1.21113 1.33123 1.14484 0.88231 0.90115 1.24847 0.95589 0.96601 0.95513 1.69868 1.44882 1.40094 0.98009 0.86925 0.80510 0.83737 0.77595 1.20277 1.18721 1.22022 1.47893 1.45605 1.12808 1.21125 1.21978 1.01238 0.80908 1.01672 1.19906 0.81078 0.87035 0.83882 1.90249 1.60332 1.15344 1.75196 1.20398 0.79529 0.87158 0.83571 1.90682 1.58570 1.14095 1.76316 1.47955 1.52815 1.12708 1.18551 1.23153 0.94760 0.79802 1.09180 1.21851 0.96578 1.01420 0.97383 1.21624 1.01013 0.94932 0.97756 1.21499 0.95749 0.96786 0.98620 0.90658 1.21760 1.01226 1.00945 0.96225 1.21731 0.94006 0.99407 0.85855 0.92208 0.94574 0.92830 0.92305 0.92257 0.90437 0.91066 0.82361 0.92176 0.90653 0.91599 0.91932 0.91906 0.92390 0.92365 0.92565 0.91484 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.66 37.16 0.32 -3.11 16 2 C 0.23 5.38 2.22 -69.09 -0.15 5.23 16 3 H 0.07 1.68 5.97 -51.93 -0.31 1.37 16 4 C -0.53 -14.61 8.95 -34.44 -0.31 -14.91 16 5 H 0.08 2.42 7.89 -52.48 -0.41 2.01 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.58 13.96 55.43 0.77 -25.80 16 8 Si 0.88 21.28 24.37 -169.99 -4.14 17.14 16 9 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 10 H -0.26 -6.16 6.53 56.52 0.37 -5.79 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 12 N -0.55 -11.63 2.75 -175.77 -0.48 -12.12 16 13 C 0.08 1.59 8.45 59.85 0.51 2.10 16 14 C 0.50 10.10 7.66 -11.58 -0.09 10.01 16 15 O -0.53 -11.22 12.36 5.50 0.07 -11.16 16 16 C 0.51 9.06 7.58 -11.59 -0.09 8.97 16 17 O -0.52 -9.71 12.76 5.50 0.07 -9.64 16 18 N -0.59 -8.60 2.98 -173.54 -0.52 -9.12 16 19 C 0.05 0.70 6.11 -3.93 -0.02 0.68 16 20 C -0.13 -1.49 6.06 -26.83 -0.16 -1.66 16 21 C -0.12 -1.08 5.17 -26.69 -0.14 -1.22 16 22 C -0.11 -1.07 2.87 -90.50 -0.26 -1.33 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 25 C 0.11 1.32 5.73 -3.71 -0.02 1.30 16 26 H 0.06 1.19 6.67 -51.93 -0.35 0.84 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 1.17 3.27 -51.92 -0.17 1.00 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 31 H 0.08 1.34 5.92 -51.93 -0.31 1.03 16 32 H 0.07 1.28 6.44 -51.93 -0.33 0.95 16 33 H 0.16 2.61 3.97 -56.42 -0.22 2.38 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.17 7.00 -51.93 -0.36 0.80 16 LS Contribution 326.90 15.07 4.93 4.93 Total: -1.00 -30.27 326.90 -6.20 -36.47 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.72 Total: 1.93 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -0.17 Total: 7.37 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.23 Total: -47.04 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.14 Total: -20.79 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.27 -6.20 -36.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336195686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.424 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds