Wall clock time and date at job start Tue Mar 31 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.44680 * 2 1 4 4 C 1.53032 * 109.45806 * 240.03096 * 2 1 3 5 5 C 1.53195 * 109.31421 * 178.61325 * 4 2 1 6 6 N 1.46931 * 108.77505 * 54.63134 * 5 4 2 7 7 C 1.34778 * 120.62296 * 126.41225 * 6 5 4 8 8 O 1.21589 * 119.99493 * 175.08808 * 7 6 5 9 9 N 1.34766 * 120.00752 * 355.09049 * 7 6 5 10 10 C 1.46504 * 120.00303 * 184.67404 * 9 7 6 11 11 C 1.52999 * 109.47195 * 184.86280 * 10 9 7 12 12 C 1.50700 * 115.55121 * 305.45440 * 11 10 9 13 13 H 1.08002 * 120.00332 * 144.69853 * 12 11 10 14 14 C 1.37880 * 120.00091 * 324.69379 * 12 11 10 15 15 N 1.31515 * 119.99530 * 2.94098 * 14 12 11 16 16 Si 1.86795 * 120.00349 * 182.94540 * 14 12 11 17 17 H 1.48503 * 109.46924 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47231 * 119.99812 * 16 14 12 19 19 H 1.48497 * 109.47023 * 240.00024 * 16 14 12 20 20 C 1.52997 * 117.49785 * 159.78109 * 11 10 9 21 21 C 1.52999 * 117.49822 * 91.11881 * 11 10 9 22 22 C 1.46923 * 118.73852 * 306.39996 * 6 5 4 23 23 C 1.53042 * 109.45961 * 119.96314 * 2 1 3 24 24 H 1.09001 * 109.52448 * 61.41768 * 23 2 1 25 25 O 1.42898 * 109.49708 * 301.33375 * 23 2 1 26 26 H 1.09004 * 109.47167 * 300.03759 * 1 2 3 27 27 H 1.09001 * 109.46979 * 60.03579 * 1 2 3 28 28 H 1.08998 * 109.46870 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.50126 * 58.66551 * 4 2 1 30 30 H 1.08996 * 109.50397 * 298.56273 * 4 2 1 31 31 H 1.09004 * 109.58771 * 294.84889 * 5 4 2 32 32 H 1.08999 * 109.59071 * 174.42528 * 5 4 2 33 33 H 0.97000 * 120.00014 * 4.68027 * 9 7 6 34 34 H 1.08998 * 109.47343 * 304.86489 * 10 9 7 35 35 H 1.08997 * 109.46840 * 64.86608 * 10 9 7 36 36 H 0.97005 * 119.99875 * 185.00677 * 15 14 12 37 37 H 1.09001 * 117.49912 * 359.97438 * 20 11 10 38 38 H 1.09001 * 117.50175 * 145.02513 * 20 11 10 39 39 H 1.08997 * 117.50088 * 214.97912 * 21 11 10 40 40 H 1.09005 * 117.49717 * 359.97438 * 21 11 10 41 41 H 1.08999 * 109.58296 * 293.80881 * 22 6 5 42 42 H 1.09005 * 109.69725 * 173.46323 * 22 6 5 43 43 H 0.96707 * 113.99572 * 180.16000 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6886 -1.2643 6 7 4.0679 -1.2487 0.0001 7 6 4.9621 -2.2572 0.0000 8 8 5.4328 -2.6523 1.0491 9 7 5.3345 -2.8276 -1.1628 10 6 6.2269 -3.9895 -1.1561 11 6 6.5876 -4.3639 -2.5950 12 6 5.4195 -4.6020 -3.5170 13 1 5.4839 -4.3136 -4.5558 14 6 4.2686 -5.1882 -3.0344 15 7 4.1684 -5.4866 -1.7574 16 14 2.8519 -5.5585 -4.1941 17 1 3.2126 -5.1291 -5.5691 18 1 2.5750 -7.0174 -4.1873 19 1 1.6416 -4.8229 -3.7478 20 6 7.8424 -5.2123 -2.8109 21 6 7.8441 -3.7307 -3.1959 22 6 3.5714 -0.6885 1.2643 23 6 2.0399 -0.7207 1.2501 24 1 1.6978 -1.7556 1.2390 25 8 1.5383 -0.0650 2.4165 26 1 -0.3634 0.5144 0.8897 27 1 -0.3633 0.5133 -0.8903 28 1 -0.3633 -1.0277 0.0005 29 1 1.6572 -0.2208 -2.1398 30 1 1.6978 -1.7556 -1.2382 31 1 3.9143 0.3409 -1.3674 32 1 3.9416 -1.2846 -2.0984 33 1 5.0118 -2.4688 -2.0043 34 1 7.1355 -3.7466 -0.6052 35 1 5.7252 -4.8301 -0.6768 36 1 3.3898 -5.9641 -1.4306 37 1 8.4111 -5.5034 -1.9277 38 1 7.8232 -5.9424 -3.6199 39 1 7.8261 -3.4869 -4.2581 40 1 8.4136 -3.0471 -2.5662 41 1 3.9144 0.3410 1.3673 42 1 3.9417 -1.2823 2.0999 43 1 1.8242 -0.4680 3.2478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336420728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:20 Heat of formation + Delta-G solvation = -54.628550 kcal Electronic energy + Delta-G solvation = -23675.125073 eV Core-core repulsion = 20335.088991 eV Total energy + Delta-G solvation = -3340.036081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.98371 -38.12208 -36.69538 -35.57566 -33.36632 -32.99621 -32.19290 -29.85514 -28.06527 -25.87179 -25.11097 -23.09609 -22.92138 -21.24258 -20.37695 -19.28930 -18.92691 -17.76360 -17.09465 -16.20856 -15.65852 -15.11298 -14.89304 -14.75228 -14.25358 -14.02078 -13.56966 -13.47947 -13.17855 -12.92166 -12.80326 -12.51209 -12.26144 -11.92586 -11.80797 -11.57338 -11.36749 -11.14511 -10.99224 -10.74970 -10.59236 -10.52225 -10.28859 -10.26749 -10.12224 -9.71612 -9.28524 -8.97230 -8.87171 -8.34797 -8.27728 -7.65127 -6.02035 -4.22583 3.16168 3.21273 3.27495 3.29868 4.00714 4.16891 4.26048 4.67532 4.75098 4.81898 4.94581 5.08375 5.16284 5.29819 5.44485 5.48339 5.52921 5.64423 5.76458 5.84252 5.92864 5.95673 6.02365 6.04920 6.11282 6.25478 6.31753 6.40553 6.55102 6.62987 6.75437 6.82047 6.91321 7.08954 7.25805 7.53843 7.59909 7.63042 7.77542 7.98027 8.30304 8.73788 8.93689 9.40545 9.46706 10.86199 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.006000 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.451678 B = 4665.597297 C = 5630.326208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.111 3.889 6 N -0.633 5.633 7 C 0.704 3.296 8 O -0.610 6.610 9 N -0.698 5.698 10 C 0.182 3.818 11 C 0.035 3.965 12 C -0.495 4.495 13 H 0.061 0.939 14 C 0.074 3.926 15 N -0.865 5.865 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.197 4.197 21 C -0.212 4.212 22 C 0.105 3.895 23 C 0.095 3.905 24 H 0.060 0.940 25 O -0.565 6.565 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.395 0.605 34 H 0.020 0.980 35 H 0.110 0.890 36 H 0.261 0.739 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.186 10.026 2.519 11.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.169 4.169 5 C -0.012 4.012 6 N -0.374 5.374 7 C 0.406 3.594 8 O -0.491 6.491 9 N -0.351 5.351 10 C 0.058 3.942 11 C 0.034 3.966 12 C -0.533 4.533 13 H 0.079 0.921 14 C -0.130 4.130 15 N -0.501 5.501 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.236 4.236 21 C -0.249 4.249 22 C -0.020 4.020 23 C 0.035 3.965 24 H 0.078 0.922 25 O -0.369 6.369 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.231 0.769 34 H 0.038 0.962 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -5.269 10.039 2.964 11.719 hybrid contribution -0.588 -0.572 -0.722 1.094 sum -5.858 9.466 2.242 11.356 Atomic orbital electron populations 1.21738 0.94653 1.01814 1.01674 1.21068 0.96323 0.99708 0.92848 0.90635 1.22004 0.95613 1.01891 0.97345 1.21611 0.93876 0.98872 0.86875 1.47077 1.46398 1.38028 1.05872 1.15860 0.79486 0.79076 0.85001 1.90810 1.59976 1.66911 1.31364 1.44995 1.51379 1.32755 1.05947 1.20961 0.89840 0.87961 0.95428 1.19259 0.87172 0.96939 0.93225 1.20553 0.96640 1.41131 0.94950 0.92086 1.25003 0.97980 0.95201 0.94835 1.69914 1.29439 1.38453 1.12279 0.86562 0.82213 0.78309 0.81136 1.19729 1.20885 1.20936 1.22934 1.06281 0.92776 1.01620 1.22946 1.06579 0.95457 0.99920 1.21970 0.93310 0.98932 0.87742 1.22223 0.92686 0.95883 0.85695 0.92217 1.86470 1.75321 1.59068 1.16063 0.91967 0.92884 0.92924 0.90242 0.90873 0.91853 0.89423 0.76854 0.96218 0.87247 0.92836 0.91443 0.90225 0.90690 0.91363 0.91876 0.89010 0.77474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.03 37.16 0.34 -1.24 16 2 C -0.08 -0.98 2.43 -90.58 -0.22 -1.20 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.65 5.36 -26.61 -0.14 -1.79 16 5 C 0.11 1.57 6.43 -3.71 -0.02 1.55 16 6 N -0.63 -10.82 2.97 -178.50 -0.53 -11.35 16 7 C 0.70 15.20 8.30 -86.93 -0.72 14.48 16 8 O -0.61 -15.17 15.76 5.29 0.08 -15.09 16 9 N -0.70 -15.26 5.07 -65.23 -0.33 -15.59 16 10 C 0.18 4.35 4.62 -4.04 -0.02 4.33 16 11 C 0.03 0.82 2.06 -155.66 -0.32 0.49 16 12 C -0.50 -12.31 8.31 -34.44 -0.29 -12.60 16 13 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 14 C 0.07 1.85 5.31 -17.82 -0.09 1.75 16 15 N -0.86 -22.56 10.17 55.43 0.56 -22.00 16 16 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.20 -4.30 9.96 -26.69 -0.27 -4.56 16 21 C -0.21 -4.40 9.93 -26.69 -0.26 -4.67 16 22 C 0.11 1.55 6.04 -3.71 -0.02 1.53 16 23 C 0.10 1.25 3.07 -26.61 -0.08 1.17 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 O -0.56 -6.63 12.60 -35.23 -0.44 -7.07 16 26 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.32 5.56 -51.93 -0.29 1.03 16 33 H 0.39 8.21 5.40 -40.82 -0.22 7.99 16 34 H 0.02 0.47 8.05 -51.93 -0.42 0.06 16 35 H 0.11 2.97 5.90 -51.93 -0.31 2.67 16 36 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.48 7.04 -51.93 -0.37 1.11 16 43 H 0.38 3.09 9.08 45.56 0.41 3.50 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -29.14 340.81 -8.87 -38.01 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -6.20 Total: 14.14 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.13 Total: -0.76 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.30 Total: -48.94 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.36 Total: -22.16 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.14 -8.87 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336420728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.615 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds