Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46291 * 2 1 4 4 C 1.53035 * 109.46204 * 240.02120 * 2 1 3 5 5 C 1.53196 * 109.31451 * 178.61133 * 4 2 1 6 6 N 1.46921 * 108.77292 * 54.64077 * 5 4 2 7 7 C 1.34774 * 120.63497 * 126.36727 * 6 5 4 8 8 O 1.21579 * 120.00429 * 185.66154 * 7 6 5 9 9 N 1.34781 * 119.99462 * 5.66396 * 7 6 5 10 10 C 1.46508 * 119.99624 * 185.31107 * 9 7 6 11 11 C 1.53000 * 109.46812 * 175.09654 * 10 9 7 12 12 C 1.50699 * 115.55297 * 56.29155 * 11 10 9 13 13 H 1.07999 * 120.00169 * 219.70567 * 12 11 10 14 14 C 1.37874 * 119.99725 * 39.98126 * 12 11 10 15 15 N 1.31515 * 120.00304 * 10.99335 * 14 12 11 16 16 Si 1.86797 * 119.99913 * 190.98978 * 14 12 11 17 17 H 1.48505 * 109.47245 * 60.00091 * 16 14 12 18 18 H 1.48504 * 109.47215 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47285 * 300.00203 * 16 14 12 20 20 C 1.52998 * 117.51610 * 201.99570 * 11 10 9 21 21 C 1.52993 * 60.00044 * 107.47720 * 20 11 10 22 22 C 1.46929 * 118.73816 * 306.63790 * 6 5 4 23 23 C 1.52766 * 109.00643 * 53.31523 * 22 6 5 24 24 H 1.09001 * 109.59031 * 185.53557 * 23 22 6 25 25 O 1.42893 * 109.36181 * 65.49599 * 23 22 6 26 26 H 1.08995 * 109.47098 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47224 * 299.97571 * 1 2 3 28 28 H 1.08997 * 109.47021 * 59.97404 * 1 2 3 29 29 H 1.09007 * 109.49194 * 58.66446 * 4 2 1 30 30 H 1.08992 * 109.52668 * 298.58134 * 4 2 1 31 31 H 1.08993 * 109.58811 * 294.85153 * 5 4 2 32 32 H 1.09006 * 109.69994 * 174.49313 * 5 4 2 33 33 H 0.96994 * 120.00505 * 5.30885 * 9 7 6 34 34 H 1.08995 * 109.47141 * 55.09504 * 10 9 7 35 35 H 1.09001 * 109.46812 * 295.09494 * 10 9 7 36 36 H 0.96995 * 120.00040 * 184.99237 * 15 14 12 37 37 H 1.08999 * 117.50086 * 214.97219 * 20 11 10 38 38 H 1.09002 * 117.50011 * 359.97438 * 20 11 10 39 39 H 1.09001 * 117.50613 * 252.50423 * 21 20 11 40 40 H 1.09005 * 117.49686 * 107.48834 * 21 20 11 41 41 H 1.08998 * 109.59072 * 173.14363 * 22 6 5 42 42 H 1.08996 * 109.58899 * 293.57729 * 22 6 5 43 43 H 0.96702 * 114.00421 * 60.15893 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 -1.2499 5 6 3.5714 -0.6887 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9614 -2.2577 0.0005 8 8 5.2868 -2.7814 1.0483 9 7 5.4942 -2.6862 -1.1610 10 6 6.3752 -3.8568 -1.1751 11 6 6.7414 -4.2021 -2.6199 12 6 7.3822 -3.0912 -3.4113 13 1 7.1169 -2.9440 -4.4478 14 6 8.3113 -2.2663 -2.8137 15 7 8.7994 -2.5732 -1.6317 16 14 8.8769 -0.7126 -3.6829 17 1 7.7099 0.1745 -3.9206 18 1 9.8720 -0.0062 -2.8366 19 1 9.4990 -1.0711 -4.9828 20 6 7.2009 -5.6323 -2.9101 21 6 5.8194 -5.1642 -3.3717 22 6 3.5672 -0.6920 1.2644 23 6 2.0398 -0.7205 1.2503 24 1 1.6568 -0.2207 2.1399 25 8 1.5915 -2.0772 1.2351 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5135 0.8902 28 1 -0.3633 0.5142 -0.8897 29 1 1.6572 -0.2210 -2.1397 30 1 1.6979 -1.7558 -1.2385 31 1 3.9143 0.3407 -1.3674 32 1 3.9437 -1.2834 -2.0983 33 1 5.2945 -2.2196 -1.9876 34 1 5.8622 -4.7030 -0.7181 35 1 7.2826 -3.6353 -0.6132 36 1 9.3974 -1.9580 -1.1792 37 1 7.9668 -5.7697 -3.6734 38 1 7.2428 -6.3274 -2.0716 39 1 4.9521 -5.5514 -2.8369 40 1 5.6763 -4.9936 -4.4387 41 1 3.9346 -1.2903 2.0982 42 1 3.9096 0.3372 1.3715 43 1 1.8784 -2.5949 1.9997 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336420729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = -55.357399 kcal Electronic energy + Delta-G solvation = -23663.987937 eV Core-core repulsion = 20323.920251 eV Total energy + Delta-G solvation = -3340.067687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.06881 -38.14763 -36.63678 -35.21623 -33.42036 -32.99808 -32.16405 -30.12907 -28.11975 -25.89535 -25.09502 -23.21202 -22.94384 -21.19767 -20.30766 -19.29533 -19.09231 -17.78688 -16.68203 -16.18712 -15.41423 -15.26523 -14.96959 -14.74261 -14.16638 -14.00840 -13.80562 -13.51411 -13.35307 -12.96463 -12.91897 -12.52749 -12.26707 -11.83229 -11.64778 -11.58547 -11.49203 -11.00446 -10.94747 -10.83101 -10.71739 -10.50555 -10.35246 -10.25138 -10.04784 -9.61482 -9.23391 -9.13867 -8.76687 -8.33870 -8.13988 -7.66729 -6.08007 -4.16275 3.22400 3.24261 3.31060 3.31333 3.95580 4.27115 4.32221 4.57458 4.69909 4.80883 4.87044 5.00639 5.07830 5.37115 5.40242 5.47426 5.52064 5.58981 5.64736 5.78496 5.82769 5.87467 5.96090 6.05238 6.05731 6.17065 6.33747 6.43760 6.58841 6.64907 6.74108 6.83473 6.95325 7.10185 7.31183 7.53831 7.63010 7.70117 7.73313 7.92883 8.34278 8.76496 8.90014 9.42502 9.45836 10.92349 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.005338 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.943734 B = 5244.231813 C = 5673.589928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.125 4.125 5 C 0.112 3.888 6 N -0.628 5.628 7 C 0.705 3.295 8 O -0.608 6.608 9 N -0.710 5.710 10 C 0.175 3.825 11 C 0.038 3.962 12 C -0.499 4.499 13 H 0.060 0.940 14 C 0.077 3.923 15 N -0.864 5.864 16 Si 0.887 3.113 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.192 4.192 21 C -0.210 4.210 22 C 0.099 3.901 23 C 0.096 3.904 24 H 0.060 0.940 25 O -0.556 6.556 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.396 0.604 34 H 0.025 0.975 35 H 0.104 0.896 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 6.390 3.361 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.163 4.163 5 C -0.012 4.012 6 N -0.367 5.367 7 C 0.406 3.594 8 O -0.488 6.488 9 N -0.364 5.364 10 C 0.052 3.948 11 C 0.038 3.962 12 C -0.536 4.536 13 H 0.078 0.922 14 C -0.128 4.128 15 N -0.499 5.499 16 Si 0.714 3.286 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.230 4.230 21 C -0.248 4.248 22 C -0.025 4.025 23 C 0.036 3.964 24 H 0.077 0.923 25 O -0.362 6.362 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.232 0.768 34 H 0.043 0.957 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -13.530 6.190 3.660 15.322 hybrid contribution 0.554 0.930 -0.379 1.147 sum -12.976 7.120 3.281 15.160 Atomic orbital electron populations 1.21746 0.94687 1.02442 1.01028 1.21127 0.96246 0.98491 0.94309 0.90281 1.21891 0.95177 1.02219 0.97007 1.21589 0.93954 0.98943 0.86745 1.46985 1.45818 1.37952 1.05911 1.15867 0.79129 0.79503 0.84867 1.90809 1.66474 1.60329 1.31228 1.45173 1.50340 1.33309 1.07549 1.20859 0.93278 0.83723 0.96935 1.19161 0.96200 0.88920 0.91963 1.20435 1.22538 1.13543 0.97125 0.92163 1.24929 0.94807 0.97774 0.95288 1.69904 1.30315 1.34978 1.14688 0.86749 0.78592 0.83565 0.79681 1.20169 1.21267 1.20186 1.22879 0.96323 1.01564 1.02254 1.22922 0.92977 1.09180 0.99682 1.21970 0.93650 0.98985 0.87903 1.22117 0.92885 0.83786 0.97616 0.92267 1.86474 1.77459 1.22385 1.49833 0.91836 0.93116 0.92889 0.91153 0.90439 0.92043 0.89749 0.76777 0.95695 0.87808 0.92649 0.90198 0.91529 0.91385 0.90657 0.88756 0.91795 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.06 37.16 0.34 -0.98 16 2 C -0.08 -0.87 2.51 -90.58 -0.23 -1.09 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.12 -1.47 5.22 -26.61 -0.14 -1.61 16 5 C 0.11 1.56 6.34 -3.71 -0.02 1.53 16 6 N -0.63 -10.48 2.92 -178.76 -0.52 -11.00 16 7 C 0.70 15.09 8.29 -86.92 -0.72 14.37 16 8 O -0.61 -14.96 15.77 5.30 0.08 -14.87 16 9 N -0.71 -15.59 5.28 -65.22 -0.34 -15.93 16 10 C 0.18 4.26 4.95 -4.04 -0.02 4.24 16 11 C 0.04 0.92 1.88 -155.66 -0.29 0.63 16 12 C -0.50 -12.78 8.33 -34.44 -0.29 -13.06 16 13 H 0.06 1.53 7.84 -52.49 -0.41 1.12 16 14 C 0.08 2.00 5.24 -17.82 -0.09 1.90 16 15 N -0.86 -23.65 10.98 55.43 0.61 -23.04 16 16 Si 0.89 20.17 29.56 -169.99 -5.02 15.14 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 C -0.19 -4.31 9.95 -26.74 -0.27 -4.57 16 21 C -0.21 -4.45 9.93 -26.74 -0.27 -4.72 16 22 C 0.10 1.36 6.04 -3.93 -0.02 1.34 16 23 C 0.10 1.08 3.22 -26.83 -0.09 0.99 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 O -0.56 -7.11 11.90 -35.23 -0.42 -7.53 16 26 H 0.06 0.68 7.72 -51.93 -0.40 0.28 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.08 7.61 -51.93 -0.40 0.68 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.25 5.75 -51.93 -0.30 0.95 16 33 H 0.40 8.26 5.61 -40.82 -0.23 8.03 16 34 H 0.02 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.10 2.88 6.01 -51.93 -0.31 2.57 16 36 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 37 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.09 1.43 7.00 -51.93 -0.36 1.06 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.38 3.98 9.08 45.56 0.41 4.39 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -30.30 341.32 -8.79 -39.09 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.20 Total: 14.05 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.11 Total: -1.05 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.26 Total: -49.97 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.34 Total: -22.40 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.30 -8.79 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336420729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.271 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds