Wall clock time and date at job start Tue Mar 31 2020 06:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46181 * 2 1 4 4 C 1.53044 * 109.45630 * 119.97078 * 2 1 3 5 5 C 1.53188 * 109.30868 * 181.38399 * 4 2 1 6 6 N 1.46929 * 108.77582 * 305.36544 * 5 4 2 7 7 C 1.34783 * 120.63040 * 233.33079 * 6 5 4 8 8 O 1.21585 * 119.99567 * 174.79699 * 7 6 5 9 9 N 1.34769 * 119.99763 * 354.80316 * 7 6 5 10 10 C 1.46500 * 119.99874 * 185.13490 * 9 7 6 11 11 C 1.52999 * 109.47463 * 184.99848 * 10 9 7 12 12 C 1.50700 * 115.54917 * 275.40131 * 11 10 9 13 13 H 1.08002 * 119.99921 * 116.14758 * 12 11 10 14 14 C 1.37877 * 120.00067 * 296.14474 * 12 11 10 15 15 N 1.31516 * 119.99740 * 352.97822 * 14 12 11 16 16 Si 1.86796 * 119.99919 * 172.97021 * 14 12 11 17 17 H 1.48499 * 109.47489 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46811 * 120.00673 * 16 14 12 19 19 H 1.48504 * 109.47208 * 240.00058 * 16 14 12 20 20 C 1.52999 * 117.50039 * 129.68801 * 11 10 9 21 21 C 1.52997 * 60.00405 * 252.51358 * 20 11 10 22 22 C 1.46930 * 118.73876 * 53.61140 * 6 5 4 23 23 C 1.53042 * 109.45744 * 240.03848 * 2 1 3 24 24 H 1.08996 * 109.49656 * 298.60191 * 23 2 1 25 25 O 1.42902 * 109.49730 * 58.66257 * 23 2 1 26 26 H 1.09004 * 109.46970 * 300.03420 * 1 2 3 27 27 H 1.09001 * 109.46841 * 60.02466 * 1 2 3 28 28 H 1.08991 * 109.47442 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.49685 * 61.43554 * 4 2 1 30 30 H 1.08996 * 109.52299 * 301.35254 * 4 2 1 31 31 H 1.08998 * 109.58552 * 185.57905 * 5 4 2 32 32 H 1.08999 * 109.58873 * 65.15089 * 5 4 2 33 33 H 0.97000 * 120.00294 * 5.13503 * 9 7 6 34 34 H 1.08998 * 109.47141 * 304.99504 * 10 9 7 35 35 H 1.09002 * 109.47667 * 64.99662 * 10 9 7 36 36 H 0.96999 * 119.99820 * 185.00493 * 15 14 12 37 37 H 1.08997 * 117.50061 * 0.02562 * 20 11 10 38 38 H 1.09001 * 117.49727 * 145.02130 * 20 11 10 39 39 H 1.09000 * 117.50240 * 252.51438 * 21 20 11 40 40 H 1.08996 * 117.50168 * 107.48771 * 21 20 11 41 41 H 1.08997 * 109.58443 * 66.17823 * 22 6 5 42 42 H 1.08997 * 109.58338 * 186.60198 * 22 6 5 43 43 H 0.96699 * 113.99895 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 1.2501 5 6 3.5713 -0.6887 1.2642 6 7 4.0678 -1.2489 -0.0001 7 6 4.9659 -2.2539 -0.0002 8 8 5.2978 -2.7724 -1.0487 9 7 5.4959 -2.6841 1.1619 10 6 6.5536 -3.6977 1.1538 11 6 6.8886 -4.0969 2.5923 12 6 7.8788 -3.2080 3.2996 13 1 7.5741 -2.6456 4.1699 14 6 9.1737 -3.1127 2.8359 15 7 9.5837 -3.8985 1.8643 16 14 10.3457 -1.8674 3.5875 17 1 9.6453 -1.1106 4.6561 18 1 11.5148 -2.5756 4.1680 19 1 10.8090 -0.9263 2.5363 20 6 6.9177 -5.5905 2.9224 21 6 5.7698 -4.7167 3.4321 22 6 3.5713 -0.6885 -1.2643 23 6 2.0399 -0.7207 -1.2502 24 1 1.6973 -1.7553 -1.2388 25 8 1.5382 -0.0650 -2.4166 26 1 -0.3633 0.5144 0.8897 27 1 -0.3633 0.5135 -0.8902 28 1 -0.3634 -1.0276 0.0005 29 1 1.6978 -1.7558 1.2382 30 1 1.6572 -0.2214 2.1401 31 1 3.9416 -1.2848 2.0983 32 1 3.9143 0.3407 1.3674 33 1 5.1770 -2.3226 2.0036 34 1 6.2124 -4.5745 0.6035 35 1 7.4433 -3.2907 0.6731 36 1 10.5131 -3.8827 1.5872 37 1 6.6986 -6.2889 2.1147 38 1 7.6533 -5.9306 3.6513 39 1 5.7503 -4.4819 4.4963 40 1 4.7953 -4.8401 2.9598 41 1 3.9143 0.3410 -1.3673 42 1 3.9417 -1.2844 -2.0985 43 1 1.8224 -0.4691 -3.2478 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336420730.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:28 Heat of formation + Delta-G solvation = -59.263412 kcal Electronic energy + Delta-G solvation = -23111.208426 eV Core-core repulsion = 19770.971362 eV Total energy + Delta-G solvation = -3340.237064 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23921 -38.34724 -36.75112 -35.77340 -33.60629 -33.21341 -32.06903 -30.06747 -28.28586 -26.11197 -25.03954 -23.31486 -23.10621 -21.28597 -20.57029 -19.39753 -19.17844 -17.95922 -17.25631 -16.23345 -15.80411 -15.35468 -15.07208 -14.68410 -14.38352 -14.07238 -13.99587 -13.56362 -13.37952 -13.11548 -12.99558 -12.61005 -12.46538 -12.10347 -11.84231 -11.68209 -11.53562 -11.17179 -11.01719 -10.93682 -10.78590 -10.53386 -10.44646 -10.32111 -10.29285 -9.73711 -9.46516 -9.05143 -8.63238 -8.56281 -8.23610 -7.96784 -6.09692 -4.16554 2.95226 3.24381 3.33695 3.35399 3.67695 3.99779 4.33856 4.41107 4.56537 4.61788 4.82320 4.94653 5.10741 5.11991 5.27250 5.30910 5.38700 5.46794 5.57079 5.66233 5.75010 5.77895 5.82040 5.91169 5.99569 6.10158 6.19469 6.29320 6.45844 6.58823 6.60839 6.67168 6.87479 7.02580 7.29237 7.31334 7.45696 7.48776 7.53069 7.83218 8.32971 8.53128 8.83198 9.13214 9.48484 10.98049 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022818 B = 0.004170 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.795243 B = 6713.140355 C = 6840.333468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.109 3.891 6 N -0.632 5.632 7 C 0.702 3.298 8 O -0.599 6.599 9 N -0.725 5.725 10 C 0.179 3.821 11 C 0.035 3.965 12 C -0.499 4.499 13 H 0.061 0.939 14 C 0.072 3.928 15 N -0.874 5.874 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.166 4.166 21 C -0.208 4.208 22 C 0.101 3.899 23 C 0.096 3.904 24 H 0.059 0.941 25 O -0.563 6.563 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.393 0.607 34 H 0.039 0.961 35 H 0.080 0.920 36 H 0.262 0.738 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.455 7.079 -2.439 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.096 0.904 4 C -0.167 4.167 5 C -0.014 4.014 6 N -0.373 5.373 7 C 0.404 3.596 8 O -0.479 6.479 9 N -0.379 5.379 10 C 0.056 3.944 11 C 0.034 3.966 12 C -0.536 4.536 13 H 0.079 0.921 14 C -0.132 4.132 15 N -0.510 5.510 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.204 4.204 21 C -0.246 4.246 22 C -0.023 4.023 23 C 0.037 3.963 24 H 0.077 0.923 25 O -0.368 6.368 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.229 0.771 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -15.279 7.058 -2.917 17.081 hybrid contribution 0.916 0.345 0.435 1.071 sum -14.363 7.403 -2.482 16.348 Atomic orbital electron populations 1.21737 0.94506 1.01753 1.01880 1.21090 0.96417 0.99961 0.92714 0.90414 1.22007 0.95390 1.01605 0.97689 1.21649 0.93774 0.99554 0.86470 1.47134 1.46278 1.37646 1.06218 1.15944 0.79088 0.79657 0.84939 1.90860 1.65791 1.60047 1.31170 1.45490 1.41214 1.44976 1.06223 1.20913 0.87980 0.88244 0.97238 1.19096 0.94613 0.92273 0.90633 1.20464 0.94352 1.26194 1.12627 0.92078 1.24987 0.98150 0.95513 0.94526 1.69968 1.16158 1.37105 1.27765 0.86563 0.80913 0.81611 0.79076 1.19720 1.20998 1.20904 1.22722 0.99721 0.95665 1.02301 1.22876 0.92950 1.09329 0.99426 1.22061 0.93481 0.99247 0.87527 1.22196 0.92523 0.95760 0.85868 0.92335 1.86480 1.75320 1.58952 1.16066 0.92794 0.91862 0.92972 0.91176 0.89987 0.89676 0.91329 0.77113 0.94302 0.90204 0.92782 0.91606 0.89989 0.90404 0.91496 0.91454 0.88779 0.77326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.04 37.16 0.34 -0.92 16 2 C -0.08 -0.81 2.43 -90.57 -0.22 -1.04 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.13 -1.22 5.36 -26.61 -0.14 -1.36 16 5 C 0.11 1.26 6.39 -3.71 -0.02 1.24 16 6 N -0.63 -9.44 2.97 -178.50 -0.53 -9.97 16 7 C 0.70 13.77 8.29 -86.92 -0.72 13.05 16 8 O -0.60 -13.99 15.74 5.29 0.08 -13.91 16 9 N -0.72 -14.34 5.37 -65.23 -0.35 -14.69 16 10 C 0.18 4.20 5.51 -4.04 -0.02 4.18 16 11 C 0.03 0.82 1.35 -155.66 -0.21 0.61 16 12 C -0.50 -12.87 8.84 -34.44 -0.30 -13.17 16 13 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 14 C 0.07 1.92 5.22 -17.82 -0.09 1.83 16 15 N -0.87 -24.31 12.44 55.43 0.69 -23.62 16 16 Si 0.89 20.56 29.55 -169.99 -5.02 15.54 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C -0.17 -3.72 9.88 -26.73 -0.26 -3.98 16 21 C -0.21 -4.22 9.77 -26.73 -0.26 -4.48 16 22 C 0.10 1.31 6.07 -3.71 -0.02 1.29 16 23 C 0.10 1.05 3.07 -26.61 -0.08 0.97 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 O -0.56 -5.67 12.59 -35.23 -0.44 -6.11 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.99 5.65 -51.93 -0.29 0.70 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.39 6.92 5.90 -40.82 -0.24 6.68 16 34 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 35 H 0.08 2.17 7.11 -51.93 -0.37 1.80 16 36 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 37 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 38 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 39 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 43 H 0.38 2.50 9.08 45.56 0.41 2.91 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -30.90 345.20 -8.67 -39.58 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.27 Total: 9.76 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.03 Total: -1.78 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.19 Total: -48.28 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.36 Total: -20.02 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.90 -8.67 -39.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336420730.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.687 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds