Wall clock time and date at job start Tue Mar 31 2020 06:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46400 * 2 1 4 4 C 1.53036 * 109.46015 * 119.96345 * 2 1 3 5 5 C 1.52770 * 109.38270 * 181.25832 * 4 2 1 6 6 N 1.46925 * 109.00758 * 305.58293 * 5 4 2 7 7 C 1.34774 * 120.63148 * 233.58477 * 6 5 4 8 8 O 1.21583 * 119.99846 * 184.83558 * 7 6 5 9 9 N 1.34774 * 120.00138 * 4.84028 * 7 6 5 10 10 C 1.46497 * 120.00094 * 184.69210 * 9 7 6 11 11 C 1.53005 * 109.47406 * 184.54632 * 10 9 7 12 12 C 1.50703 * 115.54737 * 304.25085 * 11 10 9 13 13 H 1.07997 * 120.00379 * 144.67105 * 12 11 10 14 14 C 1.37884 * 119.99545 * 324.66632 * 12 11 10 15 15 N 1.31512 * 120.00270 * 349.71122 * 14 12 11 16 16 Si 1.86798 * 119.99519 * 169.70663 * 14 12 11 17 17 H 1.48497 * 109.47236 * 90.00084 * 16 14 12 18 18 H 1.48499 * 109.47057 * 210.00429 * 16 14 12 19 19 H 1.48501 * 109.47262 * 329.99776 * 16 14 12 20 20 C 1.52992 * 117.50159 * 158.57529 * 11 10 9 21 21 C 1.53002 * 117.49884 * 89.91129 * 11 10 9 22 22 C 1.46928 * 118.73654 * 53.30979 * 6 5 4 23 23 C 1.53042 * 109.45891 * 240.02735 * 2 1 3 24 24 H 1.09004 * 109.49601 * 58.66243 * 23 2 1 25 25 O 1.42908 * 109.52356 * 298.58577 * 23 2 1 26 26 H 1.08997 * 109.47614 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46802 * 299.97544 * 1 2 3 28 28 H 1.08996 * 109.47104 * 59.97043 * 1 2 3 29 29 H 1.09001 * 109.49817 * 301.33219 * 4 2 1 30 30 H 1.09003 * 109.50417 * 61.39948 * 4 2 1 31 31 H 1.08999 * 109.50546 * 185.70414 * 5 4 2 32 32 H 1.09000 * 109.42948 * 65.42179 * 5 4 2 33 33 H 0.96999 * 119.99863 * 4.68842 * 9 7 6 34 34 H 1.08994 * 109.47111 * 64.54337 * 10 9 7 35 35 H 1.09002 * 109.46906 * 304.53962 * 10 9 7 36 36 H 0.97001 * 119.99776 * 185.01897 * 15 14 12 37 37 H 1.08999 * 117.50123 * 359.97438 * 20 11 10 38 38 H 1.09002 * 117.49857 * 145.02472 * 20 11 10 39 39 H 1.08999 * 117.50048 * 214.98087 * 21 11 10 40 40 H 1.08999 * 117.50002 * 359.97438 * 21 11 10 41 41 H 1.09000 * 109.58383 * 66.42988 * 22 6 5 42 42 H 1.08998 * 109.58671 * 186.85265 * 22 6 5 43 43 H 0.96701 * 113.99635 * 180.14625 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5672 -0.6923 1.2642 6 7 4.0679 -1.2490 0.0000 7 6 4.9613 -2.2580 0.0001 8 8 5.4344 -2.6511 -1.0486 9 7 5.3303 -2.8312 1.1627 10 6 6.3763 -3.8569 1.1741 11 6 6.5231 -4.4200 2.5892 12 6 6.8002 -3.4043 3.6674 13 1 6.3820 -3.5366 4.6543 14 6 7.5878 -2.3061 3.3939 15 7 8.2602 -2.2437 2.2654 16 14 7.6995 -0.9068 4.6263 17 1 8.8188 -1.1643 5.5676 18 1 7.9420 0.3690 3.9061 19 1 6.4264 -0.8125 5.3850 20 6 7.1658 -5.8005 2.7370 21 6 5.6614 -5.6283 2.9615 22 6 3.5713 -0.6888 -1.2643 23 6 2.0398 -0.7209 -1.2500 24 1 1.6571 -0.2209 -2.1398 25 8 1.5913 -2.0777 -1.2352 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3633 0.5143 -0.8897 29 1 1.6573 -0.2206 2.1398 30 1 1.6973 -1.7554 1.2388 31 1 3.9346 -1.2906 2.0979 32 1 3.9097 0.3369 1.3714 33 1 4.9034 -2.5647 1.9919 34 1 7.3217 -3.4152 0.8590 35 1 6.1046 -4.6605 0.4897 36 1 8.8703 -1.5070 2.1045 37 1 7.4838 -6.3078 1.8262 38 1 7.7888 -5.9743 3.6144 39 1 5.2954 -5.6888 3.9865 40 1 4.9897 -6.0217 2.1986 41 1 3.9143 0.3406 -1.3675 42 1 3.9416 -1.2849 -2.0984 43 1 1.8803 -2.5958 -1.9989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336420731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:32 Heat of formation + Delta-G solvation = -53.779515 kcal Electronic energy + Delta-G solvation = -23765.578431 eV Core-core repulsion = 20425.579166 eV Total energy + Delta-G solvation = -3339.999264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.03913 -38.12030 -36.62471 -35.21007 -33.39025 -32.97489 -32.17184 -30.10804 -28.08583 -25.88031 -25.09451 -23.16200 -22.92812 -21.19117 -20.27372 -19.26682 -19.07783 -17.77587 -16.65767 -16.20228 -15.40033 -15.21880 -14.95345 -14.77364 -14.16169 -13.95184 -13.81776 -13.42557 -13.32129 -13.04172 -12.89332 -12.50360 -12.25421 -11.77427 -11.64197 -11.56213 -11.41652 -11.06902 -10.94362 -10.78338 -10.69523 -10.49835 -10.34214 -10.24368 -10.03247 -9.61582 -9.21618 -9.10485 -8.79937 -8.31707 -8.16526 -7.62651 -6.04726 -4.16501 3.19556 3.28313 3.29059 3.30213 3.99918 4.28087 4.29377 4.59572 4.70783 4.82533 4.88387 5.01661 5.07937 5.40817 5.42595 5.49694 5.53164 5.60992 5.67332 5.81320 5.85600 5.89768 5.98943 6.06988 6.09340 6.19219 6.35779 6.46090 6.60150 6.67119 6.77549 6.86397 6.96465 7.11668 7.31101 7.55669 7.65021 7.69765 7.77058 7.97903 8.35065 8.76936 8.93644 9.44061 9.47050 10.90488 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.005717 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.870148 B = 4896.308143 C = 5475.081310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.083 4.083 3 H 0.079 0.921 4 C -0.126 4.126 5 C 0.112 3.888 6 N -0.627 5.627 7 C 0.706 3.294 8 O -0.611 6.611 9 N -0.707 5.707 10 C 0.176 3.824 11 C 0.038 3.962 12 C -0.499 4.499 13 H 0.061 0.939 14 C 0.076 3.924 15 N -0.865 5.865 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.195 4.195 21 C -0.211 4.211 22 C 0.100 3.900 23 C 0.095 3.905 24 H 0.059 0.941 25 O -0.556 6.556 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.395 0.605 34 H 0.108 0.892 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 5.742 -4.394 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.097 0.903 4 C -0.165 4.165 5 C -0.012 4.012 6 N -0.366 5.366 7 C 0.408 3.592 8 O -0.492 6.492 9 N -0.360 5.360 10 C 0.053 3.947 11 C 0.037 3.963 12 C -0.536 4.536 13 H 0.079 0.921 14 C -0.129 4.129 15 N -0.501 5.501 16 Si 0.715 3.285 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.234 4.234 21 C -0.249 4.249 22 C -0.024 4.024 23 C 0.035 3.965 24 H 0.077 0.923 25 O -0.361 6.361 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.232 0.768 34 H 0.125 0.875 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.457 5.788 -4.703 14.519 hybrid contribution 0.285 0.723 0.628 0.999 sum -12.172 6.511 -4.075 14.393 Atomic orbital electron populations 1.21746 0.94693 1.02438 1.01019 1.21123 0.96230 0.98502 0.94294 0.90280 1.21846 0.95338 1.02258 0.97043 1.21498 0.93787 0.99080 0.86813 1.46987 1.46516 1.37245 1.05858 1.15842 0.79178 0.79306 0.84893 1.90804 1.60061 1.67020 1.31325 1.45121 1.41549 1.42164 1.07157 1.20917 0.91497 0.87682 0.94600 1.19198 0.96793 0.86486 0.93798 1.20473 1.32200 1.05002 0.95972 0.92092 1.24972 0.95015 0.97837 0.95030 1.69836 1.24866 1.31771 1.23605 0.86658 0.78711 0.81921 0.81225 1.20578 1.21091 1.19641 1.22909 0.94095 1.05441 1.00914 1.22943 0.93170 1.08544 1.00228 1.22045 0.93419 0.99101 0.87856 1.22215 0.92945 0.83710 0.97630 0.92272 1.86485 1.77311 1.22423 1.49896 0.91832 0.92882 0.93136 0.91109 0.90418 0.89681 0.92059 0.76844 0.87472 0.95815 0.92672 0.91516 0.90234 0.90702 0.91368 0.91726 0.88852 0.77645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.06 37.16 0.34 -1.02 16 2 C -0.08 -0.89 2.52 -90.58 -0.23 -1.12 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.13 -1.55 5.21 -26.83 -0.14 -1.69 16 5 C 0.11 1.64 6.41 -3.93 -0.03 1.62 16 6 N -0.63 -10.74 2.92 -178.76 -0.52 -11.26 16 7 C 0.71 15.36 8.30 -86.92 -0.72 14.64 16 8 O -0.61 -15.18 15.76 5.29 0.08 -15.10 16 9 N -0.71 -15.74 5.27 -65.23 -0.34 -16.08 16 10 C 0.18 4.31 4.80 -4.04 -0.02 4.30 16 11 C 0.04 0.91 1.96 -155.66 -0.31 0.61 16 12 C -0.50 -12.73 8.35 -34.44 -0.29 -13.02 16 13 H 0.06 1.55 7.84 -52.49 -0.41 1.14 16 14 C 0.08 1.95 5.21 -17.82 -0.09 1.86 16 15 N -0.87 -23.33 10.72 55.43 0.59 -22.74 16 16 Si 0.89 19.88 29.55 -169.99 -5.02 14.86 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 20 C -0.19 -4.37 9.96 -26.70 -0.27 -4.64 16 21 C -0.21 -4.52 9.93 -26.69 -0.27 -4.79 16 22 C 0.10 1.40 6.06 -3.71 -0.02 1.38 16 23 C 0.10 1.08 3.22 -26.61 -0.09 1.00 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 O -0.56 -7.10 11.91 -35.23 -0.42 -7.52 16 26 H 0.06 0.69 7.72 -51.93 -0.40 0.29 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.10 7.61 -51.93 -0.40 0.70 16 31 H 0.08 1.35 5.57 -51.93 -0.29 1.06 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.39 8.41 5.48 -40.82 -0.22 8.19 16 34 H 0.11 2.97 5.91 -51.93 -0.31 2.66 16 35 H 0.02 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.42 7.04 -51.93 -0.37 1.06 16 43 H 0.38 3.92 9.08 45.56 0.41 4.33 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -30.04 340.63 -8.80 -38.85 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -6.18 Total: 14.73 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.12 Total: -0.87 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.27 Total: -50.08 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.34 Total: -22.62 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.04 -8.80 -38.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336420731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.934 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds