Wall clock time and date at job start Tue Mar 31 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.47036 * 2 1 4 4 O 1.21288 * 119.99839 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00371 * 180.02562 * 3 2 1 6 6 C 1.46935 * 120.62803 * 359.97438 * 5 3 2 7 7 C 1.53189 * 108.77418 * 126.41375 * 6 5 3 8 8 C 1.53046 * 109.31336 * 54.63373 * 7 6 5 9 9 C 1.53036 * 109.53927 * 298.63505 * 8 7 6 10 10 H 1.09002 * 109.49886 * 301.41083 * 9 8 7 11 11 C 1.50704 * 109.49674 * 181.34641 * 9 8 7 12 12 O 1.21286 * 119.99781 * 0.06599 * 11 9 8 13 13 N 1.34772 * 119.99695 * 180.02562 * 11 9 8 14 14 C 1.46502 * 119.99766 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47441 * 180.02562 * 14 13 11 16 16 C 1.50691 * 109.47484 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99915 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00373 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00100 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46998 * 90.00208 * 20 18 16 22 22 H 1.48498 * 109.46727 * 209.99635 * 20 18 16 23 23 H 1.48497 * 109.47015 * 329.99807 * 20 18 16 24 24 C 1.46996 * 120.61985 * 180.02562 * 5 3 2 25 25 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47213 * 299.99703 * 1 2 3 27 27 H 1.08993 * 109.46851 * 60.00512 * 1 2 3 28 28 H 1.08997 * 109.47041 * 239.99774 * 2 1 3 29 29 H 1.09000 * 109.47036 * 120.00151 * 2 1 3 30 30 H 1.09001 * 109.58491 * 6.62932 * 6 5 3 31 31 H 1.08995 * 109.70157 * 246.27356 * 6 5 3 32 32 H 1.09001 * 109.50029 * 294.68601 * 7 6 5 33 33 H 1.09004 * 109.49703 * 174.58693 * 7 6 5 34 34 H 1.08997 * 109.45653 * 178.61032 * 8 7 6 35 35 H 1.09003 * 109.44279 * 58.65241 * 8 7 6 36 36 H 0.96994 * 120.00463 * 0.02562 * 13 11 9 37 37 H 1.09002 * 109.46936 * 300.00094 * 14 13 11 38 38 H 1.08999 * 109.46986 * 59.99678 * 14 13 11 39 39 H 1.09002 * 109.46599 * 300.00291 * 15 14 13 40 40 H 1.09004 * 109.47217 * 59.99383 * 15 14 13 41 41 H 0.96998 * 120.00103 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.57815 * 113.80484 * 24 5 3 43 43 H 1.09007 * 109.62790 * 353.36344 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3245 0.5609 -0.0005 7 6 5.2967 0.7561 -1.1681 8 6 5.9311 2.1456 -1.0718 9 6 4.8398 3.2142 -1.1682 10 1 4.3035 3.1025 -2.1105 11 6 5.4688 4.5823 -1.1064 12 8 6.6717 4.6924 -0.9973 13 7 4.6945 5.6834 -1.1732 14 6 5.3060 7.0135 -1.1138 15 6 4.2144 8.0813 -1.2088 16 6 4.8434 9.4494 -1.1482 17 1 5.9146 9.5474 -1.0512 18 6 4.0514 10.5760 -1.2167 19 7 2.7471 10.4566 -1.3353 20 14 4.8311 12.2718 -1.1409 21 1 5.1641 12.7253 -2.5152 22 1 3.8781 13.2275 -0.5217 23 1 6.0708 12.2106 -0.3257 24 6 3.8622 3.0477 0.0000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 3.7969 -0.3856 -0.1186 31 1 4.8775 0.5563 0.9387 32 1 4.7561 0.6676 -2.1105 33 1 6.0768 -0.0039 -1.1229 34 1 6.6418 2.2776 -1.8875 35 1 6.4506 2.2419 -0.1184 36 1 3.7326 5.5954 -1.2607 37 1 5.8419 7.1251 -0.1712 38 1 6.0026 7.1305 -1.9439 39 1 3.6781 7.9697 -2.1511 40 1 3.5181 7.9641 -0.3784 41 1 2.1899 11.2491 -1.3839 42 1 4.3774 3.2478 0.9395 43 1 3.0301 3.7419 -0.1178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342627407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:28 Heat of formation + Delta-G solvation = -99.713076 kcal Electronic energy + Delta-G solvation = -22298.721069 eV Core-core repulsion = 18956.729976 eV Total energy + Delta-G solvation = -3341.991093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65196 -39.31406 -37.26750 -34.89775 -33.53853 -32.86717 -32.67443 -31.54299 -29.42031 -26.22897 -25.42536 -24.14060 -23.37053 -21.63000 -20.82392 -19.73734 -19.11398 -17.64175 -16.70838 -16.31767 -16.17349 -15.88736 -15.26031 -15.14168 -14.48878 -14.41490 -14.19861 -14.07811 -13.65181 -13.43601 -13.01095 -12.89007 -12.77119 -12.35654 -12.28213 -12.02066 -11.67445 -11.45073 -11.21829 -11.20165 -11.14271 -11.01994 -10.84101 -10.62061 -10.31722 -10.03006 -9.77641 -9.44390 -9.18242 -8.88192 -8.54088 -8.34679 -6.07070 -4.10302 2.41965 2.64200 3.00197 3.30711 3.36701 3.40503 3.65044 4.19584 4.41767 4.48340 4.58686 4.62083 4.73554 4.77170 4.82008 4.97578 5.03927 5.19701 5.22919 5.29653 5.40274 5.46160 5.49611 5.57358 5.62772 5.66252 5.75446 5.97004 5.97373 6.13824 6.20140 6.35074 6.35565 6.74171 6.90623 7.14286 7.53696 7.63769 7.90484 7.97133 7.99703 8.29074 8.61393 8.95683 9.54416 11.04449 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021519 B = 0.003330 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.860148 B = 8406.881267 C = 9563.080120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.511 3.489 4 O -0.535 6.535 5 N -0.614 5.614 6 C 0.105 3.895 7 C -0.135 4.135 8 C -0.099 4.099 9 C -0.122 4.122 10 H 0.098 0.902 11 C 0.512 3.488 12 O -0.548 6.548 13 N -0.720 5.720 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.897 3.103 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.120 3.880 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.399 0.601 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.022 0.978 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.157 -25.706 1.902 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.299 3.701 4 O -0.411 6.411 5 N -0.348 5.348 6 C -0.018 4.018 7 C -0.174 4.174 8 C -0.137 4.137 9 C -0.145 4.145 10 H 0.116 0.884 11 C 0.296 3.704 12 O -0.426 6.426 13 N -0.369 5.369 14 C -0.001 4.001 15 C -0.026 4.026 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.003 4.003 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.233 0.767 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.108 -24.993 1.979 25.071 hybrid contribution -0.021 0.956 -0.089 0.961 sum 0.087 -24.036 1.889 24.110 Atomic orbital electron populations 1.21551 0.92933 1.01538 1.03588 1.21658 0.98680 0.93809 1.04063 1.20845 0.81513 0.92038 0.75686 1.90742 1.54626 1.46533 1.49172 1.48162 1.05705 1.07081 1.73851 1.21813 0.91153 0.89518 0.99340 1.21963 0.98824 0.97975 0.98608 1.21321 0.96548 0.91890 1.03975 1.21728 0.97992 0.93783 1.00970 0.88379 1.20300 0.87327 0.85872 0.76901 1.90673 1.14576 1.87290 1.50089 1.46411 1.10775 1.07030 1.72732 1.21737 0.97859 0.79777 1.00730 1.19327 0.93242 0.92098 0.97889 1.21042 0.93685 0.90387 1.50983 0.92278 1.25005 0.94820 0.99474 0.95009 1.69961 1.03708 1.29617 1.49883 0.86512 0.79120 0.83649 0.78269 1.20573 1.21157 1.19746 1.21554 0.97684 0.83497 0.97518 0.92117 0.91894 0.91853 0.88944 0.88998 0.89527 0.90981 0.91325 0.90159 0.90608 0.90869 0.76750 0.92525 0.92558 0.95944 0.95864 0.92826 0.90780 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.14 -0.98 4.77 -27.88 -0.13 -1.12 16 3 C 0.51 5.68 7.70 -10.99 -0.08 5.59 16 4 O -0.53 -8.32 15.40 5.55 0.09 -8.23 16 5 N -0.61 -6.07 2.97 -172.68 -0.51 -6.58 16 6 C 0.10 0.68 6.34 -3.71 -0.02 0.65 16 7 C -0.14 -0.93 6.08 -26.61 -0.16 -1.09 16 8 C -0.10 -1.02 4.46 -26.69 -0.12 -1.14 16 9 C -0.12 -1.49 2.68 -91.63 -0.25 -1.73 16 10 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 11 C 0.51 8.50 7.16 -10.99 -0.08 8.42 16 12 O -0.55 -10.97 15.98 5.55 0.09 -10.88 16 13 N -0.72 -12.78 5.46 -60.29 -0.33 -13.11 16 14 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 15 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 20 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.12 1.43 5.58 -3.65 -0.02 1.41 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 27 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.09 0.46 7.69 -51.93 -0.40 0.06 16 29 H 0.09 0.45 7.94 -51.93 -0.41 0.04 16 30 H 0.09 0.35 5.93 -51.93 -0.31 0.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 35 H 0.07 0.81 8.13 -51.93 -0.42 0.38 16 36 H 0.40 6.43 8.02 -40.82 -0.33 6.10 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.10 1.36 6.61 -51.92 -0.34 1.02 16 LS Contribution 349.24 15.07 5.26 5.26 Total: -1.00 -34.09 349.24 -8.03 -42.12 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.24 Total: 1.02 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.10 Total: -0.41 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.11 Total: -45.51 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.17 Total: -19.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.09 -8.03 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342627407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.595 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds