Wall clock time and date at job start Tue Mar 31 2020 06:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50695 * 109.47036 * 2 1 4 4 O 1.21288 * 119.99839 * 359.97438 * 3 2 1 5 5 N 1.34771 * 120.00371 * 180.02562 * 3 2 1 6 6 C 1.46935 * 120.62803 * 359.97438 * 5 3 2 7 7 C 1.53189 * 108.77418 * 126.41375 * 6 5 3 8 8 C 1.53046 * 109.31336 * 54.63373 * 7 6 5 9 9 C 1.53036 * 109.53927 * 298.63505 * 8 7 6 10 10 H 1.09002 * 109.49886 * 301.41083 * 9 8 7 11 11 C 1.50704 * 109.49674 * 181.34641 * 9 8 7 12 12 O 1.21286 * 119.99781 * 0.06599 * 11 9 8 13 13 N 1.34772 * 119.99695 * 180.02562 * 11 9 8 14 14 C 1.46502 * 119.99766 * 180.02562 * 13 11 9 15 15 C 1.52998 * 109.47441 * 180.02562 * 14 13 11 16 16 C 1.50691 * 109.47484 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99915 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00373 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99732 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00100 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46998 * 90.00208 * 20 18 16 22 22 H 1.48498 * 109.46727 * 209.99635 * 20 18 16 23 23 H 1.48497 * 109.47015 * 329.99807 * 20 18 16 24 24 C 1.46996 * 120.61985 * 180.02562 * 5 3 2 25 25 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47213 * 299.99703 * 1 2 3 27 27 H 1.08993 * 109.46851 * 60.00512 * 1 2 3 28 28 H 1.08997 * 109.47041 * 239.99774 * 2 1 3 29 29 H 1.09000 * 109.47036 * 120.00151 * 2 1 3 30 30 H 1.09001 * 109.58491 * 6.62932 * 6 5 3 31 31 H 1.08995 * 109.70157 * 246.27356 * 6 5 3 32 32 H 1.09001 * 109.50029 * 294.68601 * 7 6 5 33 33 H 1.09004 * 109.49703 * 174.58693 * 7 6 5 34 34 H 1.08997 * 109.45653 * 178.61032 * 8 7 6 35 35 H 1.09003 * 109.44279 * 58.65241 * 8 7 6 36 36 H 0.96994 * 120.00463 * 0.02562 * 13 11 9 37 37 H 1.09002 * 109.46936 * 300.00094 * 14 13 11 38 38 H 1.08999 * 109.46986 * 59.99678 * 14 13 11 39 39 H 1.09002 * 109.46599 * 300.00291 * 15 14 13 40 40 H 1.09004 * 109.47217 * 59.99383 * 15 14 13 41 41 H 0.96998 * 120.00103 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.57815 * 113.80484 * 24 5 3 43 43 H 1.09007 * 109.62790 * 353.36344 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.3245 0.5609 -0.0005 7 6 5.2967 0.7561 -1.1681 8 6 5.9311 2.1456 -1.0718 9 6 4.8398 3.2142 -1.1682 10 1 4.3035 3.1025 -2.1105 11 6 5.4688 4.5823 -1.1064 12 8 6.6717 4.6924 -0.9973 13 7 4.6945 5.6834 -1.1732 14 6 5.3060 7.0135 -1.1138 15 6 4.2144 8.0813 -1.2088 16 6 4.8434 9.4494 -1.1482 17 1 5.9146 9.5474 -1.0512 18 6 4.0514 10.5760 -1.2167 19 7 2.7471 10.4566 -1.3353 20 14 4.8311 12.2718 -1.1409 21 1 5.1641 12.7253 -2.5152 22 1 3.8781 13.2275 -0.5217 23 1 6.0708 12.2106 -0.3257 24 6 3.8622 3.0477 0.0000 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 3.7969 -0.3856 -0.1186 31 1 4.8775 0.5563 0.9387 32 1 4.7561 0.6676 -2.1105 33 1 6.0768 -0.0039 -1.1229 34 1 6.6418 2.2776 -1.8875 35 1 6.4506 2.2419 -0.1184 36 1 3.7326 5.5954 -1.2607 37 1 5.8419 7.1251 -0.1712 38 1 6.0026 7.1305 -1.9439 39 1 3.6781 7.9697 -2.1511 40 1 3.5181 7.9641 -0.3784 41 1 2.1899 11.2491 -1.3839 42 1 4.3774 3.2478 0.9395 43 1 3.0301 3.7419 -0.1178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342627407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:27 Heat of formation + Delta-G solvation = -123.157102 kcal Electronic energy + Delta-G solvation = -22299.737678 eV Core-core repulsion = 18956.729976 eV Total energy + Delta-G solvation = -3343.007702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.62127 -40.55014 -38.22328 -36.64623 -34.89033 -34.34576 -33.38223 -32.55924 -31.17621 -27.13478 -26.95649 -25.34256 -24.15536 -23.07256 -22.23245 -21.00577 -19.87138 -18.67023 -18.46224 -17.69932 -17.14193 -16.86583 -16.59248 -16.39731 -16.35149 -15.59562 -15.14812 -15.02064 -14.63425 -14.47458 -14.44131 -14.23932 -13.74109 -13.63783 -13.25567 -13.04881 -12.95734 -12.68103 -12.55922 -12.49678 -12.26593 -12.01199 -11.97297 -11.88670 -11.71759 -11.62977 -11.49858 -10.98864 -10.69117 -10.63637 -10.08032 -9.71981 -8.26400 -6.38016 1.39588 1.40745 1.47012 1.52284 1.65473 1.94829 2.24370 2.43376 3.07991 3.48458 3.60611 3.75944 3.77732 4.04220 4.13436 4.18621 4.21933 4.29415 4.43606 4.45367 4.49032 4.59612 4.69247 4.71830 4.80575 4.82286 4.92058 5.00259 5.08480 5.08963 5.16933 5.23776 5.36044 5.39148 5.45037 5.47757 5.52980 5.75011 6.12234 6.39799 6.53293 6.75556 7.16775 7.17793 7.31654 8.85602 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021519 B = 0.003330 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.860148 B = 8406.881267 C = 9563.080120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C 0.501 3.499 4 O -0.592 6.592 5 N -0.610 5.610 6 C 0.099 3.901 7 C -0.126 4.126 8 C -0.099 4.099 9 C -0.108 4.108 10 H 0.108 0.892 11 C 0.512 3.488 12 O -0.581 6.581 13 N -0.720 5.720 14 C 0.141 3.859 15 C 0.022 3.978 16 C -0.548 4.548 17 H 0.061 0.939 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.265 1.265 24 C 0.123 3.877 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.406 0.594 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.006 0.994 40 H 0.005 0.995 41 H 0.266 0.734 42 H 0.070 0.930 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 -28.138 1.913 28.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.173 4.173 3 C 0.292 3.708 4 O -0.472 6.472 5 N -0.343 5.343 6 C -0.022 4.022 7 C -0.164 4.164 8 C -0.137 4.137 9 C -0.130 4.130 10 H 0.126 0.874 11 C 0.299 3.701 12 O -0.461 6.461 13 N -0.370 5.370 14 C 0.017 3.983 15 C -0.016 4.016 16 C -0.586 4.586 17 H 0.079 0.921 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.792 3.208 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.001 4.001 25 H 0.107 0.893 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.242 0.758 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.961 -27.480 1.988 27.569 hybrid contribution -0.277 1.681 -0.086 1.705 sum 0.684 -25.800 1.902 25.879 Atomic orbital electron populations 1.21566 0.93909 1.02676 1.01614 1.21743 0.97757 0.90930 1.06844 1.21751 0.81285 0.93396 0.74368 1.90721 1.56091 1.48571 1.51826 1.48279 1.06201 1.06851 1.72976 1.22161 0.90776 0.89566 0.99729 1.21946 0.99478 0.95950 0.99031 1.21356 0.95741 0.93436 1.03142 1.21675 0.98565 0.91197 1.01528 0.87394 1.21088 0.86835 0.86979 0.75240 1.90651 1.16127 1.87928 1.51367 1.46297 1.11318 1.06181 1.73176 1.21233 0.96326 0.80840 0.99908 1.19135 0.93609 0.92737 0.96095 1.21465 0.94043 0.91868 1.51220 0.92099 1.25935 0.95297 1.03808 0.94339 1.70078 1.05138 1.30983 1.50542 0.85396 0.78375 0.78303 0.78685 1.19628 1.20513 1.18895 1.21323 0.96640 0.85031 0.97089 0.89275 0.93943 0.93897 0.85874 0.86002 0.85860 0.89962 0.90786 0.87372 0.91602 0.91699 0.75833 0.93354 0.93292 0.97610 0.97686 0.92519 0.91158 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.20 71.98 0.66 -1.27 16 2 C -0.13 -1.40 4.77 29.85 0.14 -1.26 16 3 C 0.50 10.50 7.70 87.66 0.67 11.18 16 4 O -0.59 -18.95 15.40 -3.05 -0.05 -19.00 16 5 N -0.61 -10.95 2.97 -818.62 -2.43 -13.38 16 6 C 0.10 0.88 6.34 86.36 0.55 1.43 16 7 C -0.13 -1.25 6.08 30.67 0.19 -1.07 16 8 C -0.10 -1.87 4.46 30.62 0.14 -1.73 16 9 C -0.11 -2.56 2.68 -11.45 -0.03 -2.59 16 10 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 11 C 0.51 17.29 7.16 87.66 0.63 17.92 16 12 O -0.58 -23.58 15.98 -3.05 -0.05 -23.62 16 13 N -0.72 -26.45 5.46 -463.05 -2.53 -28.98 16 14 C 0.14 6.28 5.61 86.38 0.48 6.76 16 15 C 0.02 1.14 5.09 29.84 0.15 1.29 16 16 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 18 C 0.00 0.28 5.46 84.65 0.46 0.74 16 19 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 20 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 24 C 0.12 2.93 5.58 86.36 0.48 3.41 16 25 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.04 0.75 8.10 -2.39 -0.02 0.73 16 27 H 0.04 0.75 8.10 -2.39 -0.02 0.74 16 28 H 0.12 0.60 7.69 -2.39 -0.02 0.58 16 29 H 0.12 0.61 7.94 -2.39 -0.02 0.59 16 30 H 0.12 0.27 5.93 -2.39 -0.01 0.25 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 35 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16 36 H 0.41 13.77 8.02 -92.71 -0.74 13.02 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.08 2.21 6.61 -2.38 -0.02 2.19 16 Total: -1.00 -77.01 349.24 2.26 -74.75 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.25 Total: 15.90 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.76 Total: 3.60 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -4.68 Total: -98.22 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.10 Total: -42.62 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -77.01 2.26 -74.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342627407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.404 kcal (2) G-P(sol) polarization free energy of solvation -77.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds