Wall clock time and date at job start Tue Mar 31 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.43291 * 2 1 4 4 C 1.55238 * 110.58012 * 237.41750 * 2 1 3 5 5 C 1.54894 * 102.58338 * 203.33342 * 4 2 1 6 6 C 1.54266 * 104.31305 * 37.93170 * 5 4 2 7 7 H 1.09004 * 110.03005 * 95.65211 * 6 5 4 8 8 N 1.46494 * 110.03259 * 217.03573 * 6 5 4 9 9 C 1.34775 * 120.00282 * 273.54972 * 8 6 5 10 10 O 1.21355 * 119.99922 * 359.97438 * 9 8 6 11 11 C 1.49445 * 120.00369 * 180.02562 * 9 8 6 12 12 O 1.21348 * 120.00292 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00567 * 179.97438 * 11 9 8 14 14 C 1.46494 * 120.00480 * 179.97438 * 13 11 9 15 15 C 1.53002 * 109.47093 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47218 * 179.97438 * 15 14 13 17 17 C 1.50693 * 109.47391 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00230 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00061 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00209 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47303 * 59.99970 * 21 19 17 23 23 H 1.48497 * 109.47332 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46891 * 300.00223 * 21 19 17 25 25 C 1.53869 * 106.60031 * 336.32486 * 6 5 4 26 26 H 1.09002 * 109.47015 * 297.45451 * 1 2 3 27 27 H 1.08997 * 109.47536 * 57.46280 * 1 2 3 28 28 H 1.09001 * 109.46911 * 177.46124 * 1 2 3 29 29 H 1.08996 * 110.89448 * 85.04906 * 4 2 1 30 30 H 1.08993 * 110.76342 * 321.56571 * 4 2 1 31 31 H 1.09002 * 110.48891 * 279.18596 * 5 4 2 32 32 H 1.08998 * 110.48494 * 156.67683 * 5 4 2 33 33 H 0.97003 * 120.00592 * 93.54718 * 8 6 5 34 34 H 0.97004 * 119.99423 * 0.02562 * 13 11 9 35 35 H 1.09003 * 109.47258 * 300.00104 * 14 13 11 36 36 H 1.08991 * 109.47362 * 59.99980 * 14 13 11 37 37 H 1.08994 * 109.47151 * 299.99912 * 15 14 13 38 38 H 1.09001 * 109.47361 * 60.00251 * 15 14 13 39 39 H 1.09007 * 109.46785 * 300.00051 * 16 15 14 40 40 H 1.08999 * 109.47079 * 59.99569 * 16 15 14 41 41 H 0.96996 * 120.00371 * 179.97438 * 20 19 17 42 42 H 1.08999 * 110.04012 * 119.28327 * 25 6 5 43 43 H 1.09006 * 110.02998 * 240.67078 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0757 -0.7826 -1.2246 5 6 3.4938 -1.1945 -0.7572 6 6 3.3186 -1.5367 0.7368 7 1 3.1740 -2.6101 0.8595 8 7 4.4946 -1.0995 1.4931 9 6 5.5659 -1.9101 1.6013 10 8 5.5561 -3.0024 1.0727 11 6 6.7653 -1.4643 2.3733 12 8 6.7750 -0.3723 2.9023 13 7 7.8365 -2.2751 2.4820 14 6 9.0125 -1.8379 3.2383 15 6 10.0773 -2.9361 3.2054 16 6 11.3058 -2.4792 3.9947 17 6 12.3543 -3.5611 3.9628 18 1 12.1638 -4.4823 3.4323 19 6 13.5573 -3.3745 4.6101 20 7 13.7896 -2.2526 5.2557 21 14 14.8573 -4.7153 4.5700 22 1 15.2455 -4.9865 3.1625 23 1 16.0496 -4.2720 5.3361 24 1 14.3100 -5.9538 5.1799 25 6 2.0700 -0.7773 1.2182 26 1 -0.3633 0.4738 0.9119 27 1 -0.3634 0.5527 -0.8663 28 1 -0.3633 -1.0267 -0.0455 29 1 2.1301 -0.1404 -2.1036 30 1 1.4642 -1.6624 -1.4247 31 1 4.1915 -0.3660 -0.8795 32 1 3.8393 -2.0677 -1.3106 33 1 4.5024 -0.2265 1.9159 34 1 7.8289 -3.1479 2.0588 35 1 9.4147 -0.9288 2.7911 36 1 8.7269 -1.6390 4.2711 37 1 9.6754 -3.8453 3.6523 38 1 10.3628 -3.1345 2.1723 39 1 11.7076 -1.5700 3.5473 40 1 11.0206 -2.2804 5.0277 41 1 14.6357 -2.1215 5.7114 42 1 1.3185 -1.4819 1.5745 43 1 2.3389 -0.0839 2.0151 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343152964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:00 Heat of formation + Delta-G solvation = -106.251912 kcal Electronic energy + Delta-G solvation = -21340.286828 eV Core-core repulsion = 17998.012190 eV Total energy + Delta-G solvation = -3342.274638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74994 -39.18622 -37.98509 -35.72112 -34.37466 -33.29237 -31.24382 -30.93595 -28.90440 -27.21304 -25.52881 -24.28383 -22.61399 -20.94727 -20.74888 -20.37974 -20.11310 -18.31697 -17.12548 -16.38903 -16.13032 -15.94087 -15.36442 -15.08459 -14.85733 -14.54706 -14.44227 -14.01296 -13.75454 -13.54407 -13.33465 -12.50331 -12.36774 -12.29861 -11.91215 -11.86497 -11.79120 -11.65313 -11.38548 -11.16892 -11.00121 -10.94514 -10.89327 -10.75898 -10.63297 -9.89984 -9.77270 -9.43593 -9.36270 -9.14331 -8.97664 -8.37759 -6.02593 -4.05720 1.43122 2.36609 3.23369 3.32519 3.37049 3.39301 3.66815 4.08244 4.14435 4.37965 4.43846 4.53257 4.88903 4.91345 4.99511 5.05949 5.14170 5.19200 5.31589 5.33206 5.42777 5.51667 5.59454 5.63743 5.69131 5.71986 5.77148 5.82109 5.98163 6.08004 6.15122 6.27508 6.54020 6.69701 6.94463 6.95233 7.42044 7.61357 7.73243 7.74603 7.95575 8.06035 8.36870 9.00535 9.58544 11.08618 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.057294 B = 0.002217 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.592160 B =12627.043116 C =12893.047171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.137 4.137 6 C 0.138 3.862 7 H 0.095 0.905 8 N -0.699 5.699 9 C 0.509 3.491 10 O -0.521 6.521 11 C 0.499 3.501 12 O -0.527 6.527 13 N -0.691 5.691 14 C 0.114 3.886 15 C -0.123 4.123 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.128 4.128 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.020 0.980 41 H 0.262 0.738 42 H 0.078 0.922 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.431 4.233 -11.038 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.157 4.157 5 C -0.176 4.176 6 C 0.034 3.966 7 H 0.113 0.887 8 N -0.352 5.352 9 C 0.289 3.711 10 O -0.396 6.396 11 C 0.279 3.721 12 O -0.404 6.404 13 N -0.343 5.343 14 C -0.008 4.008 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.166 4.166 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.249 0.751 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -26.269 4.311 -10.907 28.769 hybrid contribution 0.855 -0.675 0.066 1.091 sum -25.415 3.637 -10.841 27.868 Atomic orbital electron populations 1.21807 0.94709 1.01951 1.01772 1.22041 0.95706 0.99419 0.94478 0.90477 1.22617 0.95604 0.99958 0.97478 1.22810 0.97606 1.02140 0.94999 1.21766 0.83709 1.00278 0.90843 0.88735 1.45996 1.15056 1.20638 1.53560 1.20368 0.84476 0.85016 0.81202 1.90754 1.81493 1.20894 1.46448 1.20048 0.84418 0.85533 0.82115 1.90756 1.81781 1.20919 1.46978 1.46076 1.15387 1.20253 1.52589 1.21841 0.83837 0.99449 0.95719 1.21929 0.96050 0.96394 1.01706 1.19029 0.90308 0.96935 0.95036 1.21163 0.99879 1.02109 1.33023 0.92618 1.25027 0.98447 0.95657 0.95328 1.69949 1.24557 1.24711 1.34077 0.86626 0.80973 0.82083 0.78123 1.20229 1.21276 1.20232 1.22538 0.96301 0.99463 0.98322 0.92588 0.92562 0.92488 0.91197 0.91069 0.90910 0.90785 0.75129 0.75317 0.91110 0.91097 0.92425 0.92432 0.96199 0.96198 0.92861 0.90312 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.13 37.16 0.34 -0.33 16 2 C -0.10 -0.53 3.46 -88.77 -0.31 -0.84 16 3 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 4 C -0.12 -0.70 6.36 -24.55 -0.16 -0.85 16 5 C -0.14 -1.07 6.51 -25.07 -0.16 -1.23 16 6 C 0.14 1.15 3.23 -66.82 -0.22 0.93 16 7 H 0.09 0.89 7.61 -51.93 -0.39 0.50 16 8 N -0.70 -7.05 5.04 -53.16 -0.27 -7.31 16 9 C 0.51 6.69 7.88 -11.59 -0.09 6.60 16 10 O -0.52 -7.78 16.15 5.49 0.09 -7.69 16 11 C 0.50 7.50 7.89 -11.59 -0.09 7.41 16 12 O -0.53 -8.97 16.48 5.50 0.09 -8.88 16 13 N -0.69 -10.46 5.55 -60.74 -0.34 -10.79 16 14 C 0.11 1.96 5.67 -4.04 -0.02 1.94 16 15 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 21 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.13 -0.78 6.14 -25.62 -0.16 -0.94 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.26 8.13 -51.93 -0.42 -0.17 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.41 3.73 7.77 -40.82 -0.32 3.42 16 34 H 0.41 5.69 7.94 -40.82 -0.32 5.36 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.08 0.44 7.84 -51.93 -0.41 0.03 16 43 H 0.07 0.43 7.60 -51.93 -0.39 0.04 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -31.56 357.05 -8.17 -39.73 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.29 Total: 1.80 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.56 Total: -2.77 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.13 Total: -44.07 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.18 Total: -16.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.56 -8.17 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343152964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.522 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds