Wall clock time and date at job start Tue Mar 31 2020 06:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58571 * 2 1 4 4 C 1.53189 * 109.58787 * 120.28678 * 2 1 3 5 5 C 1.53045 * 109.31079 * 174.41996 * 4 2 1 6 6 C 1.53039 * 109.53745 * 298.63502 * 5 4 2 7 7 C 1.53185 * 109.31393 * 61.36435 * 6 5 4 8 8 N 1.46922 * 108.77877 * 305.36319 * 7 6 5 9 9 C 1.34778 * 120.63464 * 233.62677 * 8 7 6 10 10 O 1.21349 * 119.99771 * 187.15727 * 9 8 7 11 11 C 1.49445 * 119.99593 * 7.16685 * 9 8 7 12 12 O 1.21351 * 120.00725 * 6.83876 * 11 9 8 13 13 N 1.34776 * 119.99796 * 186.84381 * 11 9 8 14 14 C 1.46506 * 120.00301 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47181 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46952 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47195 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99710 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99770 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00590 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99757 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46781 * 90.00074 * 21 19 17 23 23 H 1.48498 * 109.47222 * 210.00241 * 21 19 17 24 24 H 1.48503 * 109.46993 * 330.00776 * 21 19 17 25 25 H 1.09008 * 109.46535 * 293.97567 * 1 2 3 26 26 H 1.08994 * 109.46981 * 173.97685 * 1 2 3 27 27 H 1.09000 * 109.47256 * 53.97219 * 1 2 3 28 28 H 1.09000 * 109.49656 * 294.37124 * 4 2 1 29 29 H 1.08992 * 109.49939 * 54.46824 * 4 2 1 30 30 H 1.08997 * 109.46116 * 58.65262 * 5 4 2 31 31 H 1.08996 * 109.45941 * 178.61136 * 5 4 2 32 32 H 1.08999 * 109.50018 * 181.31786 * 6 5 4 33 33 H 1.09004 * 109.49744 * 301.38078 * 6 5 4 34 34 H 1.09001 * 109.58704 * 65.15761 * 7 6 5 35 35 H 1.09007 * 109.58934 * 185.43600 * 7 6 5 36 36 H 0.96999 * 120.00162 * 359.97438 * 13 11 9 37 37 H 1.08999 * 109.46510 * 299.99953 * 14 13 11 38 38 H 1.08998 * 109.47228 * 59.99713 * 14 13 11 39 39 H 1.09004 * 109.47017 * 299.99799 * 15 14 13 40 40 H 1.08998 * 109.47325 * 59.99709 * 15 14 13 41 41 H 1.09001 * 109.46979 * 299.99144 * 16 15 14 42 42 H 1.08998 * 109.47453 * 59.99653 * 16 15 14 43 43 H 0.96994 * 120.00543 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 6 3.5676 -0.8466 1.1710 6 6 3.9569 -1.6658 -0.0616 7 6 3.4650 -0.9486 -1.3227 8 7 2.0225 -0.7010 -1.1937 9 6 1.1672 -1.1095 -2.1519 10 8 -0.0016 -0.7874 -2.0994 11 6 1.6583 -1.9594 -3.2789 12 8 2.7947 -2.3848 -3.2676 13 7 0.8389 -2.2533 -4.3078 14 6 1.3201 -3.0869 -5.4124 15 6 0.2016 -3.2660 -6.4409 16 6 0.7039 -4.1371 -7.5941 17 6 -0.3979 -4.3140 -8.6069 18 1 -1.3600 -3.8510 -8.4445 19 6 -0.1773 -5.0659 -9.7413 20 7 0.9944 -5.6292 -9.9393 21 14 -1.5433 -5.2858 -10.9964 22 1 -1.4693 -4.1976 -12.0041 23 1 -1.3873 -6.5985 -11.6729 24 1 -2.8591 -5.2359 -10.3097 25 1 -0.3633 0.4176 0.9391 26 1 -0.3633 -1.0219 -0.1078 27 1 -0.3634 0.6044 -0.8311 28 1 1.7661 -0.1642 2.1370 29 1 1.6030 -1.7237 1.2934 30 1 4.0062 0.1486 1.0989 31 1 3.9379 -1.3423 2.0683 32 1 5.0412 -1.7698 -0.1018 33 1 3.4987 -2.6531 -0.0019 34 1 3.9903 0.0002 -1.4319 35 1 3.6539 -1.5734 -2.1957 36 1 -0.0696 -1.9136 -4.3167 37 1 2.1749 -2.6043 -5.8860 38 1 1.6201 -4.0617 -5.0279 39 1 -0.6536 -3.7484 -5.9674 40 1 -0.0980 -2.2910 -6.8252 41 1 1.5592 -3.6550 -8.0677 42 1 1.0033 -5.1120 -7.2094 43 1 1.1495 -6.1586 -10.7371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343319683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:51 Heat of formation + Delta-G solvation = -65.644982 kcal Electronic energy + Delta-G solvation = -22299.056363 eV Core-core repulsion = 18958.542573 eV Total energy + Delta-G solvation = -3340.513790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.19605 -39.07467 -37.68197 -35.71982 -33.49708 -32.95647 -32.85367 -31.27845 -28.04210 -27.07630 -25.28545 -24.26318 -22.93360 -21.92871 -20.96049 -20.61494 -19.45562 -17.58966 -16.88910 -16.42321 -16.10816 -15.61737 -15.36472 -15.06468 -14.76309 -14.47420 -14.40041 -14.22330 -13.79066 -13.69885 -13.04954 -12.70476 -12.49290 -12.32999 -12.06830 -11.88186 -11.82745 -11.48079 -11.31225 -11.25124 -10.95199 -10.92424 -10.78512 -10.60170 -10.23226 -9.92102 -9.57173 -9.17664 -9.05660 -8.87675 -8.77907 -8.39274 -6.04008 -4.07085 1.39743 2.29342 3.18944 3.30287 3.36725 3.39672 3.47770 4.31292 4.43301 4.48548 4.53067 4.61418 4.80534 4.99103 5.06975 5.20072 5.32075 5.37737 5.48265 5.52633 5.56424 5.64464 5.66290 5.66969 5.75141 5.83689 5.91127 6.05196 6.05345 6.09126 6.33931 6.48653 6.51690 6.73095 6.93158 6.99508 7.31105 7.60083 7.71604 7.76208 7.94278 8.04883 8.35469 8.99455 9.57451 11.07293 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039570 B = 0.002760 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.435888 B =10143.441800 C =10712.219344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.139 3.861 3 H 0.075 0.925 4 C -0.131 4.131 5 C -0.123 4.123 6 C -0.130 4.130 7 C 0.047 3.953 8 N -0.578 5.578 9 C 0.509 3.491 10 O -0.516 6.516 11 C 0.501 3.499 12 O -0.517 6.517 13 N -0.687 5.687 14 C 0.112 3.888 15 C -0.123 4.123 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.160 0.840 36 H 0.412 0.588 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 11.361 22.440 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.169 4.169 5 C -0.161 4.161 6 C -0.168 4.168 7 C -0.074 4.074 8 N -0.312 5.312 9 C 0.292 3.708 10 O -0.393 6.393 11 C 0.282 3.718 12 O -0.396 6.396 13 N -0.338 5.338 14 C -0.010 4.010 15 C -0.161 4.161 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.176 0.824 36 H 0.248 0.752 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.516 11.108 22.326 25.342 hybrid contribution -0.975 0.018 -0.592 1.141 sum 3.541 11.127 21.734 24.672 Atomic orbital electron populations 1.22245 0.92477 1.03889 1.01399 1.21413 0.95939 0.95241 0.83790 0.90746 1.22010 0.96264 1.01459 0.97159 1.21575 0.95488 1.00565 0.98433 1.21844 1.01287 0.99482 0.94211 1.23277 0.78127 1.02417 1.03561 1.48018 1.08264 1.55617 1.19339 1.20181 0.86016 0.81066 0.83580 1.90797 1.17212 1.55458 1.75813 1.20253 0.85880 0.82009 0.83686 1.90297 1.18186 1.53591 1.77527 1.46117 1.16605 1.50592 1.20472 1.21872 0.99026 0.94129 0.85938 1.21929 0.96264 1.01505 0.96389 1.19030 0.96779 0.94331 0.91154 1.21200 0.98566 1.31506 1.04857 0.92573 1.25021 0.95611 0.95619 0.98172 1.69954 1.22139 1.33648 1.27583 0.86577 0.82340 0.77481 0.81501 1.20637 1.21197 1.19857 0.93422 0.91646 0.90076 0.90690 0.91386 0.91865 0.91719 0.90643 0.91497 0.92023 0.82404 0.75236 0.90982 0.91008 0.92423 0.92430 0.96201 0.96191 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 7.61 37.16 0.28 -1.17 16 2 C 0.14 1.30 3.49 -67.60 -0.24 1.07 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.13 -1.01 5.37 -26.61 -0.14 -1.15 16 5 C -0.12 -0.88 5.88 -26.69 -0.16 -1.04 16 6 C -0.13 -1.11 6.08 -26.62 -0.16 -1.28 16 7 C 0.05 0.48 6.26 -3.72 -0.02 0.46 16 8 N -0.58 -6.56 2.97 -165.72 -0.49 -7.05 16 9 C 0.51 6.84 7.53 -11.59 -0.09 6.75 16 10 O -0.52 -7.46 12.11 5.50 0.07 -7.40 16 11 C 0.50 7.31 7.77 -11.59 -0.09 7.22 16 12 O -0.52 -8.20 13.11 5.50 0.07 -8.13 16 13 N -0.69 -10.03 5.55 -60.73 -0.34 -10.37 16 14 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 15 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 26 H 0.06 0.77 6.95 -51.93 -0.36 0.41 16 27 H 0.08 0.95 6.55 -51.93 -0.34 0.61 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.16 1.97 3.81 -56.66 -0.22 1.76 16 36 H 0.41 5.51 7.96 -40.82 -0.33 5.19 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -30.15 341.83 -8.28 -38.42 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.12 Total: 1.37 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.33 Total: -2.56 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.09 Total: -43.24 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.14 Total: -15.52 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.15 -8.28 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343319683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.220 kcal (2) G-P(sol) polarization free energy of solvation -30.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds