Wall clock time and date at job start Tue Mar 31 2020 07:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.78694 * 2 1 4 4 C 1.55155 * 110.72181 * 236.75724 * 2 1 3 5 5 C 1.54909 * 101.58531 * 206.13853 * 4 2 1 6 6 N 1.47426 * 104.82833 * 37.01054 * 5 4 2 7 7 C 1.34779 * 125.64660 * 155.83856 * 6 5 4 8 8 O 1.21589 * 119.99903 * 186.15809 * 7 6 5 9 9 N 1.34774 * 120.00027 * 5.88430 * 7 6 5 10 10 C 1.46499 * 120.00139 * 175.43562 * 9 7 6 11 11 C 1.53003 * 109.47507 * 184.87574 * 10 9 7 12 12 C 1.50710 * 115.54419 * 305.70716 * 11 10 9 13 13 H 1.07991 * 119.99720 * 144.92242 * 12 11 10 14 14 C 1.37877 * 119.99930 * 324.91492 * 12 11 10 15 15 N 1.31512 * 120.00104 * 2.05724 * 14 12 11 16 16 Si 1.86801 * 119.99898 * 182.05129 * 14 12 11 17 17 H 1.48490 * 109.47211 * 60.00002 * 16 14 12 18 18 H 1.48495 * 109.47039 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46736 * 300.00314 * 16 14 12 20 20 C 1.52988 * 117.50216 * 160.03758 * 11 10 9 21 21 C 1.52989 * 117.50125 * 91.37342 * 11 10 9 22 22 C 1.47019 * 108.70571 * 336.09836 * 6 5 4 23 23 H 1.08999 * 109.88572 * 120.25117 * 22 6 5 24 24 C 1.53005 * 109.88305 * 241.41911 * 22 6 5 25 25 O 1.42906 * 109.46978 * 293.54443 * 24 22 6 26 26 H 1.08994 * 109.47518 * 181.78819 * 1 2 3 27 27 H 1.09004 * 109.47380 * 301.79133 * 1 2 3 28 28 H 1.09008 * 109.46772 * 61.78473 * 1 2 3 29 29 H 1.09000 * 111.00278 * 88.05870 * 4 2 1 30 30 H 1.09008 * 111.03546 * 324.23198 * 4 2 1 31 31 H 1.08997 * 110.36566 * 278.16902 * 5 4 2 32 32 H 1.09000 * 110.36772 * 155.84373 * 5 4 2 33 33 H 0.96997 * 120.00229 * 355.44174 * 9 7 6 34 34 H 1.09000 * 109.47155 * 304.86949 * 10 9 7 35 35 H 1.08997 * 109.47393 * 64.87073 * 10 9 7 36 36 H 0.96995 * 120.00171 * 185.00651 * 15 14 12 37 37 H 1.09000 * 117.50084 * 359.97438 * 20 11 10 38 38 H 1.09004 * 117.50074 * 145.02277 * 20 11 10 39 39 H 1.09003 * 117.49996 * 214.98326 * 21 11 10 40 40 H 1.09000 * 117.50148 * 359.97438 * 21 11 10 41 41 H 1.08996 * 109.47112 * 53.54707 * 24 22 6 42 42 H 1.08997 * 109.46874 * 173.54466 * 24 22 6 43 43 H 0.96696 * 113.99826 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0790 -0.7955 -1.2137 5 6 3.4632 -1.2499 -0.6874 6 7 3.2443 -1.5508 0.7391 7 6 3.9913 -2.3848 1.4896 8 8 3.6534 -2.6453 2.6281 9 7 5.1097 -2.9341 0.9761 10 6 5.9749 -3.7602 1.8219 11 6 7.2271 -4.1567 1.0372 12 6 6.9776 -4.8313 -0.2872 13 1 7.6420 -4.6501 -1.1191 14 6 5.9012 -5.6799 -0.4367 15 7 5.0693 -5.8693 0.5641 16 14 5.6246 -6.5606 -2.0607 17 1 6.8000 -7.4147 -2.3671 18 1 4.4087 -7.4074 -1.9637 19 1 5.4450 -5.5591 -3.1424 20 6 8.4508 -4.6047 1.8387 21 6 8.4477 -3.2406 1.1444 22 6 2.0726 -0.7954 1.2059 23 1 1.3102 -1.4829 1.5723 24 6 2.4854 0.1697 2.3191 25 8 2.8946 -0.5753 3.4679 26 1 -0.3634 -1.0271 0.0321 27 1 -0.3634 0.5414 0.8735 28 1 -0.3633 0.4859 -0.9056 29 1 2.1849 -0.1519 -2.0870 30 1 1.4453 -1.6536 -1.4381 31 1 4.1931 -0.4481 -0.7984 32 1 3.7959 -2.1428 -1.2167 33 1 5.3419 -2.7826 0.0466 34 1 6.2651 -3.1943 2.7071 35 1 5.4366 -4.6581 2.1250 36 1 4.3547 -6.5203 0.4842 37 1 8.3640 -4.6166 2.9252 38 1 9.0758 -5.3871 1.4081 39 1 9.0705 -3.1260 0.2573 40 1 8.3586 -2.3550 1.7737 41 1 3.3130 0.7895 1.9742 42 1 1.6397 0.8056 2.5807 43 1 3.1702 -0.0265 4.2148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408385137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:52 Heat of formation + Delta-G solvation = -47.965761 kcal Electronic energy + Delta-G solvation = -23744.628080 eV Core-core repulsion = 20404.880919 eV Total energy + Delta-G solvation = -3339.747161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.81251 -37.63572 -36.34955 -35.91881 -32.93640 -32.32705 -31.94697 -30.06511 -27.68916 -25.75147 -24.93769 -23.68939 -22.14340 -21.16435 -20.33756 -19.13715 -18.68134 -17.33583 -16.81639 -16.30010 -15.97716 -14.86776 -14.67814 -14.38787 -14.03575 -13.89833 -13.62976 -13.39873 -13.17828 -12.79805 -12.69314 -12.26077 -11.98940 -11.79508 -11.54143 -11.46361 -11.23273 -11.03916 -10.88150 -10.78485 -10.70964 -10.64081 -10.46240 -10.18020 -9.64316 -9.56242 -9.01630 -8.82366 -8.77803 -8.20471 -8.01925 -7.45108 -5.91452 -4.13106 3.24248 3.32539 3.33178 3.41513 4.24613 4.33056 4.36571 4.51912 4.80796 4.89077 5.02115 5.21697 5.32225 5.33513 5.41234 5.47295 5.50732 5.55855 5.58650 5.62505 5.87410 5.93123 5.99349 5.99683 6.11576 6.18863 6.35530 6.40345 6.64577 6.69361 6.82372 6.86659 6.99312 7.22049 7.33150 7.68145 7.92263 8.02880 8.04869 8.11966 8.40119 8.84497 9.20175 9.49531 9.81825 10.96191 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017126 B = 0.006021 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.530725 B = 4649.635462 C = 5602.509580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.083 0.917 4 C -0.126 4.126 5 C 0.099 3.901 6 N -0.639 5.639 7 C 0.713 3.287 8 O -0.570 6.570 9 N -0.704 5.704 10 C 0.186 3.814 11 C 0.038 3.962 12 C -0.497 4.497 13 H 0.059 0.941 14 C 0.074 3.926 15 N -0.862 5.862 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.199 4.199 21 C -0.212 4.212 22 C 0.164 3.836 23 H 0.075 0.925 24 C 0.067 3.933 25 O -0.528 6.528 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.391 0.609 34 H 0.016 0.984 35 H 0.108 0.892 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.041 0.959 43 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.066 13.170 -2.492 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.164 4.164 5 C -0.024 4.024 6 N -0.380 5.380 7 C 0.414 3.586 8 O -0.446 6.446 9 N -0.356 5.356 10 C 0.063 3.937 11 C 0.037 3.963 12 C -0.535 4.535 13 H 0.077 0.923 14 C -0.130 4.130 15 N -0.498 5.498 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.238 4.238 21 C -0.250 4.250 22 C 0.059 3.941 23 H 0.093 0.907 24 C -0.013 4.013 25 O -0.330 6.330 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.225 0.775 34 H 0.034 0.966 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.589 12.298 -1.915 14.577 hybrid contribution 0.282 0.072 -1.038 1.078 sum -7.307 12.370 -2.953 14.668 Atomic orbital electron populations 1.21764 0.93842 1.02431 1.01808 1.22177 0.96201 0.99157 0.94225 0.89819 1.22840 0.96395 1.00122 0.97080 1.22177 0.96763 1.00604 0.82894 1.47591 1.31818 1.48611 1.10024 1.15513 0.80265 0.78712 0.84068 1.90896 1.71893 1.64360 1.17476 1.44826 1.23264 1.52810 1.14685 1.20852 0.89575 0.94339 0.88953 1.19252 0.85415 0.95870 0.95745 1.20448 1.10680 1.27403 0.94944 0.92314 1.25006 0.95001 0.96457 0.96571 1.69900 1.16340 1.32849 1.30664 0.86674 0.77598 0.79847 0.83966 1.20265 1.21293 1.20236 1.22929 1.07077 0.96740 0.97011 1.22927 1.07153 0.92932 1.01954 1.21308 0.88294 0.92282 0.92238 0.90654 1.22556 0.97245 0.93523 0.87968 1.87080 1.87775 1.34610 1.23553 0.92136 0.92446 0.92157 0.90143 0.90477 0.92285 0.90594 0.77497 0.96628 0.87413 0.92715 0.91497 0.90305 0.90809 0.91471 0.94371 0.94081 0.79597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.14 37.16 0.34 -0.91 16 2 C -0.10 -1.05 3.07 -88.79 -0.27 -1.33 16 3 H 0.08 0.78 7.86 -51.93 -0.41 0.37 16 4 C -0.13 -1.40 6.53 -24.58 -0.16 -1.56 16 5 C 0.10 1.44 6.50 -2.53 -0.02 1.43 16 6 N -0.64 -11.66 3.07 -168.69 -0.52 -12.17 16 7 C 0.71 16.46 8.12 -86.92 -0.71 15.75 16 8 O -0.57 -15.14 13.94 -18.30 -0.26 -15.39 16 9 N -0.70 -16.40 5.10 -65.22 -0.33 -16.73 16 10 C 0.19 4.70 4.61 -4.04 -0.02 4.68 16 11 C 0.04 0.93 2.07 -155.67 -0.32 0.61 16 12 C -0.50 -12.89 8.30 -34.44 -0.29 -13.18 16 13 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 14 C 0.07 1.94 5.29 -17.82 -0.09 1.84 16 15 N -0.86 -23.65 10.19 55.43 0.56 -23.08 16 16 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 C -0.20 -4.50 9.96 -26.70 -0.27 -4.77 16 21 C -0.21 -4.60 9.92 -26.70 -0.26 -4.86 16 22 C 0.16 2.49 2.86 -66.95 -0.19 2.30 16 23 H 0.08 1.30 7.78 -51.93 -0.40 0.90 16 24 C 0.07 0.94 6.47 37.16 0.24 1.18 16 25 O -0.53 -9.29 10.54 -58.82 -0.62 -9.91 16 26 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.89 8.05 -51.92 -0.42 0.48 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.20 7.46 -51.93 -0.39 0.81 16 33 H 0.39 8.80 6.51 -40.82 -0.27 8.53 16 34 H 0.02 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.11 3.09 5.92 -51.93 -0.31 2.78 16 36 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 39 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.36 4.59 9.12 45.56 0.42 5.00 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -32.00 342.95 -9.42 -41.42 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -6.39 Total: 14.16 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -2.02 Total: 1.19 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.29 Total: -51.99 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.88 Total: -25.30 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.00 -9.42 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408385137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.545 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds