Wall clock time and date at job start Tue Mar 31 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.49378 * 2 1 4 4 C 1.53094 * 109.47991 * 239.97463 * 2 1 3 5 5 C 1.53179 * 109.16478 * 182.41153 * 4 2 1 6 6 H 1.09008 * 109.54386 * 176.84863 * 5 4 2 7 7 N 1.46503 * 109.61543 * 297.06691 * 5 4 2 8 8 C 1.34777 * 120.00010 * 204.60337 * 7 5 4 9 9 O 1.21582 * 120.00178 * 359.97438 * 8 7 5 10 10 N 1.34776 * 119.99824 * 180.02562 * 8 7 5 11 11 C 1.46495 * 119.99976 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47615 * 181.05069 * 11 10 8 13 13 C 1.50700 * 115.54813 * 39.67102 * 12 11 10 14 14 H 1.07997 * 120.00463 * 264.53848 * 13 12 11 15 15 C 1.37887 * 119.99881 * 84.54060 * 13 12 11 16 16 N 1.31513 * 119.99703 * 352.91835 * 15 13 12 17 17 Si 1.86794 * 120.00156 * 172.91745 * 15 13 12 18 18 H 1.48496 * 109.47039 * 59.99914 * 17 15 13 19 19 H 1.48499 * 109.47041 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47114 * 299.99826 * 17 15 13 21 21 C 1.53001 * 117.50136 * 253.97187 * 12 11 10 22 22 C 1.52992 * 117.50521 * 185.34745 * 12 11 10 23 23 C 1.53179 * 109.03649 * 56.97790 * 5 4 2 24 24 C 1.53093 * 109.16358 * 303.01628 * 23 5 4 25 25 O 1.42906 * 109.41113 * 57.61467 * 24 23 5 26 26 H 1.09002 * 109.46690 * 299.96989 * 1 2 3 27 27 H 1.08998 * 109.46952 * 59.96823 * 1 2 3 28 28 H 1.09003 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.51912 * 302.31300 * 4 2 1 30 30 H 1.08997 * 109.52322 * 62.49973 * 4 2 1 31 31 H 0.97001 * 119.99568 * 24.59607 * 7 5 4 32 32 H 0.96999 * 120.00284 * 359.97438 * 10 8 7 33 33 H 1.09011 * 109.46910 * 301.04686 * 11 10 8 34 34 H 1.08994 * 109.47722 * 61.04330 * 11 10 8 35 35 H 0.97001 * 120.00075 * 185.03697 * 16 15 13 36 36 H 1.09006 * 117.49570 * 359.97438 * 21 12 11 37 37 H 1.08999 * 117.50345 * 145.01060 * 21 12 11 38 38 H 1.09001 * 117.50557 * 214.97720 * 22 12 11 39 39 H 1.09000 * 117.49839 * 359.97438 * 22 12 11 40 40 H 1.09008 * 109.51741 * 183.11684 * 23 5 4 41 41 H 1.09000 * 109.57538 * 62.95994 * 23 5 4 42 42 H 1.08996 * 109.48361 * 297.63338 * 24 23 5 43 43 H 1.08993 * 109.48905 * 177.59903 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7709 -1.2122 6 1 3.9391 -1.3327 -2.0708 7 7 4.1076 0.5918 -1.2517 8 6 5.3529 0.8125 -1.7176 9 8 6.0311 -0.1194 -2.1048 10 7 5.8466 2.0660 -1.7534 11 6 7.1999 2.3060 -2.2604 12 6 7.5218 3.7989 -2.1686 13 6 7.0308 4.4944 -0.9251 14 1 6.0871 5.0195 -0.9369 15 6 7.7864 4.4603 0.2278 16 7 8.8636 3.7081 0.2859 17 14 7.2800 5.4824 1.7070 18 1 5.9253 5.0695 2.1536 19 1 8.2505 5.2704 2.8108 20 1 7.2613 6.9193 1.3328 21 6 7.5289 4.6015 -3.4712 22 6 8.8472 4.2741 -2.7671 23 6 4.0176 -1.4602 0.0808 24 6 3.4308 -0.7094 1.2790 25 8 2.0066 -0.6743 1.1664 26 1 -0.3633 0.5134 0.8903 27 1 -0.3633 0.5143 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6442 -1.7374 -1.2710 30 1 1.7148 -0.1843 -2.1399 31 1 3.5665 1.3351 -0.9426 32 1 5.3057 2.8094 -1.4442 33 1 7.9169 1.7424 -1.6632 34 1 7.2609 1.9844 -3.3000 35 1 9.3540 3.6268 1.1189 36 1 7.3047 4.0657 -4.3937 37 1 7.1783 5.6327 -3.4290 38 1 9.3640 5.0899 -2.2617 39 1 9.4902 3.5230 -3.2260 40 1 5.1059 -1.4499 0.1419 41 1 3.6621 -2.4906 0.0869 42 1 3.8193 0.3089 1.2957 43 1 3.7100 -1.2202 2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430896118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:09 Heat of formation + Delta-G solvation = -64.897649 kcal Electronic energy + Delta-G solvation = -23120.695097 eV Core-core repulsion = 19780.213715 eV Total energy + Delta-G solvation = -3340.481383 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22402 -38.69178 -36.74496 -34.82308 -33.20107 -32.88601 -32.03468 -30.98519 -27.82420 -26.08508 -25.17713 -24.07641 -22.34336 -21.21217 -20.83127 -19.55413 -19.17894 -17.67848 -16.43529 -16.32488 -15.99480 -15.65171 -15.03625 -14.71125 -14.58744 -14.19569 -14.00923 -13.68435 -13.06557 -12.98070 -12.68300 -12.59758 -12.39402 -12.14556 -11.94104 -11.89522 -11.61393 -11.23007 -11.04528 -10.97267 -10.91965 -10.57805 -10.36436 -10.24653 -9.72357 -9.49021 -9.46826 -8.96582 -8.79162 -8.53287 -8.29522 -7.83176 -6.11922 -4.21346 3.21862 3.27414 3.29378 3.30720 3.69734 3.86171 4.30314 4.57718 4.67986 4.83896 4.90312 5.01794 5.05497 5.17629 5.24720 5.33137 5.44417 5.45554 5.50150 5.60071 5.81189 5.87911 5.95992 6.01463 6.04220 6.06226 6.16158 6.31849 6.49321 6.58161 6.71908 6.85967 6.91038 7.08725 7.18484 7.33496 7.40640 7.45705 7.66243 7.76142 8.31556 8.76105 8.81092 9.29559 9.45757 10.95689 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.004899 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.676162 B = 5713.993046 C = 6484.160219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.057 0.943 4 C -0.156 4.156 5 C 0.165 3.835 6 H 0.090 0.910 7 N -0.751 5.751 8 C 0.698 3.302 9 O -0.607 6.607 10 N -0.712 5.712 11 C 0.184 3.816 12 C 0.029 3.971 13 C -0.505 4.505 14 H 0.059 0.941 15 C 0.078 3.922 16 N -0.869 5.869 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.211 4.211 22 C -0.152 4.152 23 C -0.167 4.167 24 C 0.063 3.937 25 O -0.382 6.382 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.391 0.609 32 H 0.400 0.600 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.664 -6.506 -0.896 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.075 0.925 4 C -0.194 4.194 5 C 0.059 3.941 6 H 0.108 0.892 7 N -0.408 5.408 8 C 0.398 3.602 9 O -0.488 6.488 10 N -0.365 5.365 11 C 0.060 3.940 12 C 0.028 3.972 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.127 4.127 16 N -0.504 5.504 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.248 4.248 22 C -0.190 4.190 23 C -0.206 4.206 24 C -0.014 4.014 25 O -0.301 6.301 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.225 0.775 32 H 0.235 0.765 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.918 -7.434 -1.027 14.939 hybrid contribution -0.316 1.351 1.019 1.722 sum -13.234 -6.083 -0.008 14.565 Atomic orbital electron populations 1.21762 0.93083 1.02833 1.02446 1.22058 0.95004 0.95084 0.85252 0.92511 1.22517 0.95133 1.02807 0.98984 1.20671 0.91940 0.83108 0.98388 0.89164 1.45247 1.15996 1.08852 1.70710 1.16055 0.81209 0.84181 0.78791 1.90846 1.59318 1.42725 1.55861 1.45130 1.18096 1.06040 1.67264 1.20693 0.81073 0.96923 0.95335 1.19033 0.97281 0.89701 0.91195 1.20230 1.05785 1.33989 0.94215 0.92278 1.24977 0.94408 0.94867 0.98464 1.69968 1.17062 1.36945 1.26432 0.86728 0.78314 0.81080 0.82256 1.20274 1.21282 1.20163 1.23083 1.04270 1.00849 0.96618 1.22492 0.90546 1.02603 1.03347 1.22583 1.02632 0.99849 0.95532 1.22545 0.80276 1.00312 0.98271 1.87906 1.21488 1.77910 1.42796 0.91852 0.91095 0.91847 0.89686 0.90232 0.77542 0.76492 0.91744 0.94884 0.92762 0.91608 0.90453 0.89947 0.91665 0.89904 0.90618 0.92743 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.56 37.16 0.36 -0.84 16 2 C 0.08 0.87 3.09 -26.68 -0.08 0.79 16 3 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 4 C -0.16 -1.56 5.07 -26.59 -0.13 -1.70 16 5 C 0.16 2.15 2.81 -67.74 -0.19 1.96 16 6 H 0.09 1.31 7.59 -51.92 -0.39 0.92 16 7 N -0.75 -11.14 4.41 -58.49 -0.26 -11.40 16 8 C 0.70 13.66 8.53 -86.92 -0.74 12.92 16 9 O -0.61 -14.03 16.01 5.29 0.08 -13.94 16 10 N -0.71 -14.47 5.34 -65.23 -0.35 -14.81 16 11 C 0.18 4.20 5.75 -4.05 -0.02 4.18 16 12 C 0.03 0.67 1.71 -155.67 -0.27 0.40 16 13 C -0.50 -12.58 7.43 -34.44 -0.26 -12.84 16 14 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 15 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 16 N -0.87 -23.75 12.97 55.43 0.72 -23.03 16 17 Si 0.89 20.08 29.55 -169.99 -5.02 15.05 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 C -0.21 -4.40 9.88 -26.73 -0.26 -4.66 16 22 C -0.15 -3.45 9.51 -26.74 -0.25 -3.70 16 23 C -0.17 -2.17 5.80 -26.59 -0.15 -2.32 16 24 C 0.06 0.79 6.68 37.21 0.25 1.03 16 25 O -0.38 -4.77 10.41 -35.23 -0.37 -5.14 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.39 5.03 7.10 -40.82 -0.29 4.74 16 32 H 0.40 7.66 7.47 -40.82 -0.30 7.36 16 33 H 0.06 1.68 8.14 -51.92 -0.42 1.25 16 34 H 0.03 0.74 7.94 -51.93 -0.41 0.32 16 35 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 36 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 37 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 39 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.74 7.75 -51.93 -0.40 0.34 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -29.43 347.72 -9.00 -38.43 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -7.19 Total: 12.46 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -1.86 Total: -2.86 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.11 Total: -49.24 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.28 Total: -19.09 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.43 -9.00 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430896118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.468 kcal (2) G-P(sol) polarization free energy of solvation -29.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds