Wall clock time and date at job start Tue Mar 31 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.49378 * 2 1 4 4 C 1.53094 * 109.47991 * 239.97463 * 2 1 3 5 5 C 1.53179 * 109.16478 * 182.41153 * 4 2 1 6 6 H 1.09008 * 109.54386 * 176.84863 * 5 4 2 7 7 N 1.46503 * 109.61543 * 297.06691 * 5 4 2 8 8 C 1.34777 * 120.00010 * 204.60337 * 7 5 4 9 9 O 1.21582 * 120.00178 * 359.97438 * 8 7 5 10 10 N 1.34776 * 119.99824 * 180.02562 * 8 7 5 11 11 C 1.46495 * 119.99976 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47615 * 181.05069 * 11 10 8 13 13 C 1.50700 * 115.54813 * 39.67102 * 12 11 10 14 14 H 1.07997 * 120.00463 * 264.53848 * 13 12 11 15 15 C 1.37887 * 119.99881 * 84.54060 * 13 12 11 16 16 N 1.31513 * 119.99703 * 352.91835 * 15 13 12 17 17 Si 1.86794 * 120.00156 * 172.91745 * 15 13 12 18 18 H 1.48496 * 109.47039 * 59.99914 * 17 15 13 19 19 H 1.48499 * 109.47041 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47114 * 299.99826 * 17 15 13 21 21 C 1.53001 * 117.50136 * 253.97187 * 12 11 10 22 22 C 1.52992 * 117.50521 * 185.34745 * 12 11 10 23 23 C 1.53179 * 109.03649 * 56.97790 * 5 4 2 24 24 C 1.53093 * 109.16358 * 303.01628 * 23 5 4 25 25 O 1.42906 * 109.41113 * 57.61467 * 24 23 5 26 26 H 1.09002 * 109.46690 * 299.96989 * 1 2 3 27 27 H 1.08998 * 109.46952 * 59.96823 * 1 2 3 28 28 H 1.09003 * 109.47142 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.51912 * 302.31300 * 4 2 1 30 30 H 1.08997 * 109.52322 * 62.49973 * 4 2 1 31 31 H 0.97001 * 119.99568 * 24.59607 * 7 5 4 32 32 H 0.96999 * 120.00284 * 359.97438 * 10 8 7 33 33 H 1.09011 * 109.46910 * 301.04686 * 11 10 8 34 34 H 1.08994 * 109.47722 * 61.04330 * 11 10 8 35 35 H 0.97001 * 120.00075 * 185.03697 * 16 15 13 36 36 H 1.09006 * 117.49570 * 359.97438 * 21 12 11 37 37 H 1.08999 * 117.50345 * 145.01060 * 21 12 11 38 38 H 1.09001 * 117.50557 * 214.97720 * 22 12 11 39 39 H 1.09000 * 117.49839 * 359.97438 * 22 12 11 40 40 H 1.09008 * 109.51741 * 183.11684 * 23 5 4 41 41 H 1.09000 * 109.57538 * 62.95994 * 23 5 4 42 42 H 1.08996 * 109.48361 * 297.63338 * 24 23 5 43 43 H 1.08993 * 109.48905 * 177.59903 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7709 -1.2122 6 1 3.9391 -1.3327 -2.0708 7 7 4.1076 0.5918 -1.2517 8 6 5.3529 0.8125 -1.7176 9 8 6.0311 -0.1194 -2.1048 10 7 5.8466 2.0660 -1.7534 11 6 7.1999 2.3060 -2.2604 12 6 7.5218 3.7989 -2.1686 13 6 7.0308 4.4944 -0.9251 14 1 6.0871 5.0195 -0.9369 15 6 7.7864 4.4603 0.2278 16 7 8.8636 3.7081 0.2859 17 14 7.2800 5.4824 1.7070 18 1 5.9253 5.0695 2.1536 19 1 8.2505 5.2704 2.8108 20 1 7.2613 6.9193 1.3328 21 6 7.5289 4.6015 -3.4712 22 6 8.8472 4.2741 -2.7671 23 6 4.0176 -1.4602 0.0808 24 6 3.4308 -0.7094 1.2790 25 8 2.0066 -0.6743 1.1664 26 1 -0.3633 0.5134 0.8903 27 1 -0.3633 0.5143 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6442 -1.7374 -1.2710 30 1 1.7148 -0.1843 -2.1399 31 1 3.5665 1.3351 -0.9426 32 1 5.3057 2.8094 -1.4442 33 1 7.9169 1.7424 -1.6632 34 1 7.2609 1.9844 -3.3000 35 1 9.3540 3.6268 1.1189 36 1 7.3047 4.0657 -4.3937 37 1 7.1783 5.6327 -3.4290 38 1 9.3640 5.0899 -2.2617 39 1 9.4902 3.5230 -3.2260 40 1 5.1059 -1.4499 0.1419 41 1 3.6621 -2.4906 0.0869 42 1 3.8193 0.3089 1.2957 43 1 3.7100 -1.2202 2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430896118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:08 Heat of formation + Delta-G solvation = -83.753735 kcal Electronic energy + Delta-G solvation = -23121.512759 eV Core-core repulsion = 19780.213715 eV Total energy + Delta-G solvation = -3341.299044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45099 -40.03324 -38.49086 -36.05184 -34.90277 -33.99588 -33.72393 -32.23445 -28.73332 -27.85198 -26.98295 -25.11129 -23.23281 -22.94069 -22.24114 -21.31394 -20.46610 -19.21955 -18.10293 -17.27476 -17.12921 -16.98327 -16.63986 -16.36282 -15.90772 -15.76979 -15.34821 -14.92549 -14.63071 -14.42004 -14.04826 -13.64144 -13.54185 -13.42789 -13.29383 -12.93771 -12.90846 -12.81049 -12.78630 -12.38765 -12.08460 -12.01256 -11.92608 -11.50781 -11.29819 -11.21921 -10.83094 -10.49512 -10.45363 -10.24023 -10.00010 -9.50833 -8.09033 -6.22672 1.43028 1.46094 1.51531 1.86926 2.28682 2.42350 2.81896 3.18407 3.38955 3.59285 3.70724 3.79033 3.89960 4.00466 4.19840 4.28166 4.30587 4.53733 4.54893 4.65779 4.69407 4.74229 4.76549 4.78323 4.87015 4.96200 5.01530 5.04559 5.09027 5.09672 5.18020 5.27869 5.35047 5.50209 5.60945 5.63561 5.76007 5.80770 6.16893 6.27298 6.38632 6.84899 7.26919 7.47260 7.72796 8.98202 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.004899 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.676162 B = 5713.993046 C = 6484.160219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.056 0.944 4 C -0.144 4.144 5 C 0.159 3.841 6 H 0.075 0.925 7 N -0.732 5.732 8 C 0.696 3.304 9 O -0.645 6.645 10 N -0.711 5.711 11 C 0.199 3.801 12 C 0.005 3.995 13 C -0.504 4.504 14 H 0.066 0.934 15 C 0.031 3.969 16 N -0.904 5.904 17 Si 0.946 3.054 18 H -0.267 1.267 19 H -0.295 1.295 20 H -0.272 1.272 21 C -0.180 4.180 22 C -0.162 4.162 23 C -0.163 4.163 24 C 0.067 3.933 25 O -0.390 6.390 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.403 0.597 32 H 0.406 0.594 33 H 0.023 0.977 34 H 0.037 0.963 35 H 0.258 0.742 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.039 0.961 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.287 -6.024 -1.171 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 H 0.074 0.926 4 C -0.182 4.182 5 C 0.054 3.946 6 H 0.093 0.907 7 N -0.389 5.389 8 C 0.396 3.604 9 O -0.528 6.528 10 N -0.364 5.364 11 C 0.074 3.926 12 C 0.004 3.996 13 C -0.541 4.541 14 H 0.084 0.916 15 C -0.170 4.170 16 N -0.541 5.541 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.221 1.221 20 H -0.197 1.197 21 C -0.217 4.217 22 C -0.200 4.200 23 C -0.202 4.202 24 C -0.010 4.010 25 O -0.309 6.309 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.239 0.761 32 H 0.243 0.757 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.058 0.942 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.609 -6.932 -1.294 17.128 hybrid contribution 0.475 1.172 1.070 1.657 sum -15.134 -5.760 -0.224 16.195 Atomic orbital electron populations 1.21767 0.91174 1.03416 1.03343 1.22291 0.96482 0.94814 0.84585 0.92643 1.22469 0.92093 1.04041 0.99557 1.20867 0.94216 0.81683 0.97799 0.90656 1.45117 1.14331 1.10281 1.69138 1.16203 0.82233 0.83335 0.78639 1.90819 1.60743 1.43705 1.57536 1.44963 1.17296 1.06659 1.67530 1.20347 0.81446 0.96137 0.94719 1.19113 0.98090 0.90036 0.92311 1.20523 1.05712 1.33219 0.94680 0.91592 1.25659 0.94512 0.95742 1.01089 1.70108 1.18456 1.38816 1.26739 0.85799 0.78073 0.79727 0.79126 1.19169 1.22145 1.19702 1.23079 1.01580 1.00950 0.96058 1.22426 0.91076 1.02349 1.04181 1.22525 1.00729 1.01088 0.95848 1.22467 0.80648 0.99430 0.98443 1.87911 1.20897 1.78199 1.43918 0.92041 0.89163 0.91429 0.88185 0.88607 0.76078 0.75734 0.95882 0.94478 0.93324 0.89354 0.89629 0.91843 0.91202 0.92925 0.88850 0.94222 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.56 71.98 0.69 -1.19 16 2 C 0.08 1.38 3.09 30.62 0.09 1.47 16 3 H 0.06 1.02 6.72 -2.39 -0.02 1.01 16 4 C -0.14 -2.48 5.07 30.69 0.16 -2.32 16 5 C 0.16 3.99 2.81 45.11 0.13 4.12 16 6 H 0.08 2.15 7.59 -2.38 -0.02 2.13 16 7 N -0.73 -21.08 4.41 -457.23 -2.02 -23.10 16 8 C 0.70 27.32 8.53 179.05 1.53 28.85 16 9 O -0.65 -30.42 16.01 -3.97 -0.06 -30.48 16 10 N -0.71 -28.79 5.34 -478.55 -2.55 -31.35 16 11 C 0.20 9.19 5.75 86.38 0.50 9.68 16 12 C 0.01 0.24 1.71 -52.93 -0.09 0.15 16 13 C -0.50 -24.79 7.43 25.60 0.19 -24.60 16 14 H 0.07 3.10 7.82 -2.91 -0.02 3.07 16 15 C 0.03 1.62 5.39 84.66 0.46 2.08 16 16 N -0.90 -50.48 12.97 21.45 0.28 -50.20 16 17 Si 0.95 41.01 29.55 68.60 2.03 43.04 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.30 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 C -0.18 -7.15 9.88 30.59 0.30 -6.85 16 22 C -0.16 -7.36 9.51 30.59 0.29 -7.07 16 23 C -0.16 -4.14 5.80 30.69 0.18 -3.96 16 24 C 0.07 1.62 6.68 72.01 0.48 2.10 16 25 O -0.39 -8.97 10.41 -148.98 -1.55 -10.52 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.40 9.75 7.10 -92.71 -0.66 9.09 16 32 H 0.41 15.22 7.47 -92.71 -0.69 14.52 16 33 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.04 1.66 7.94 -2.39 -0.02 1.64 16 35 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 36 H 0.09 3.13 8.08 -2.38 -0.02 3.11 16 37 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.06 7.75 -2.39 -0.02 1.04 16 43 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -63.62 347.72 0.67 -62.95 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.35 Total: 37.22 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 4.90 Total: 2.45 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.29 Total: -104.65 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -1.61 Total: -41.00 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -63.62 0.67 -62.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430896118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.808 kcal (2) G-P(sol) polarization free energy of solvation -63.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds