Wall clock time and date at job start Tue Mar 31 2020 06:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.48663 * 2 1 4 4 C 1.53105 * 109.48293 * 119.93934 * 2 1 3 5 5 C 1.53171 * 109.15882 * 177.50588 * 4 2 1 6 6 H 1.09001 * 109.54498 * 63.06030 * 5 4 2 7 7 N 1.46498 * 109.54758 * 183.24358 * 5 4 2 8 8 C 1.34770 * 120.00223 * 204.82365 * 7 5 4 9 9 O 1.21595 * 119.99953 * 359.97438 * 8 7 5 10 10 N 1.34780 * 120.00399 * 179.97438 * 8 7 5 11 11 C 1.46493 * 120.00287 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47036 * 184.79013 * 11 10 8 13 13 C 1.50692 * 115.55016 * 294.81752 * 12 11 10 14 14 H 1.08002 * 120.00113 * 99.48121 * 13 12 11 15 15 C 1.37879 * 119.99926 * 279.20564 * 13 12 11 16 16 N 1.31509 * 120.00406 * 355.32457 * 15 13 12 17 17 Si 1.86810 * 119.99823 * 175.32663 * 15 13 12 18 18 H 1.48500 * 109.46903 * 89.99877 * 17 15 13 19 19 H 1.48493 * 109.46965 * 209.99884 * 17 15 13 20 20 H 1.48497 * 109.46890 * 330.00046 * 17 15 13 21 21 C 1.52997 * 117.51909 * 80.52228 * 12 11 10 22 22 C 1.52994 * 60.00384 * 107.47928 * 21 12 11 23 23 C 1.53178 * 109.10772 * 303.15487 * 5 4 2 24 24 C 1.53091 * 109.16651 * 56.93483 * 23 5 4 25 25 O 1.42897 * 109.48168 * 239.97316 * 2 1 3 26 26 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46980 * 300.02646 * 1 2 3 28 28 H 1.09000 * 109.46738 * 60.02845 * 1 2 3 29 29 H 1.08995 * 109.45043 * 57.64194 * 4 2 1 30 30 H 1.09006 * 109.59731 * 297.45130 * 4 2 1 31 31 H 0.96995 * 119.99864 * 24.81549 * 7 5 4 32 32 H 0.97003 * 119.99358 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47459 * 64.78650 * 11 10 8 34 34 H 1.09004 * 109.47203 * 304.78954 * 11 10 8 35 35 H 0.96998 * 120.00343 * 185.00416 * 16 15 13 36 36 H 1.08997 * 117.49957 * 214.97404 * 21 12 11 37 37 H 1.09008 * 117.49760 * 359.97438 * 21 12 11 38 38 H 1.09005 * 117.49918 * 252.51013 * 22 21 12 39 39 H 1.08997 * 117.49844 * 107.48801 * 22 21 12 40 40 H 1.09001 * 109.52517 * 176.84172 * 23 5 4 41 41 H 1.09006 * 109.52184 * 296.96327 * 23 5 4 42 42 H 1.08994 * 109.47813 * 62.37258 * 24 23 5 43 43 H 1.08998 * 109.48099 * 182.39620 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7204 1.2508 5 6 3.5711 -0.7708 1.2122 6 1 3.9703 0.2430 1.2416 7 7 4.0659 -1.5259 2.3660 8 6 5.3098 -1.3029 2.8343 9 8 6.0216 -0.4752 2.2988 10 7 5.7648 -1.9972 3.8961 11 6 7.1167 -1.7543 4.4054 12 6 7.4248 -2.7473 5.5279 13 6 6.5832 -2.6058 6.7699 14 1 5.7398 -3.2616 6.9283 15 6 6.8934 -1.6430 7.7068 16 7 7.9756 -0.9098 7.5628 17 14 5.7764 -1.3801 9.1809 18 1 6.2167 -2.2543 10.2977 19 1 5.8459 0.0406 9.6074 20 1 4.3789 -1.7177 8.8094 21 6 7.8573 -4.1583 5.1245 22 6 8.8809 -3.1817 5.7069 23 6 4.0177 -1.4600 -0.0808 24 6 3.4308 -0.7092 -1.2790 25 8 2.0067 -0.6741 -1.1664 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8898 28 1 -0.3633 0.5134 -0.8903 29 1 1.6432 -1.7350 1.2730 30 1 1.7164 -0.1815 2.1411 31 1 3.4981 -2.1863 2.7930 32 1 5.1967 -2.6572 4.3235 33 1 7.1822 -0.7373 4.7918 34 1 7.8377 -1.8833 3.5981 35 1 8.2330 -0.2834 8.2572 36 1 7.5331 -4.9844 5.7574 37 1 7.9220 -4.3797 4.0591 38 1 9.6193 -2.7604 5.0246 39 1 9.2301 -3.3652 6.7230 40 1 5.1059 -1.4497 -0.1421 41 1 3.6624 -2.4905 -0.0859 42 1 3.8193 0.3090 -1.2957 43 1 3.7103 -1.2200 -2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430896119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:12 Heat of formation + Delta-G solvation = -67.518185 kcal Electronic energy + Delta-G solvation = -22559.073531 eV Core-core repulsion = 19218.478513 eV Total energy + Delta-G solvation = -3340.595018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.10044 -38.91174 -36.78945 -35.01868 -33.27570 -32.98153 -31.99517 -31.15855 -27.85826 -26.20955 -25.14766 -23.84111 -22.36869 -21.17791 -20.54321 -20.16856 -19.37889 -17.73506 -16.57819 -16.48234 -15.98036 -15.52109 -15.07165 -14.78245 -14.63469 -14.26948 -14.01868 -13.76276 -13.60408 -13.09105 -12.73302 -12.64688 -12.53511 -12.09621 -11.88003 -11.60472 -11.49258 -11.26897 -11.04119 -11.01269 -10.93460 -10.55021 -10.50121 -10.25353 -9.91983 -9.64320 -9.42741 -9.03998 -8.86238 -8.51260 -8.24457 -7.98570 -6.08268 -4.17627 3.15418 3.24337 3.32619 3.33553 3.58017 3.76522 4.33811 4.51202 4.63488 4.71181 4.78356 4.95220 5.06526 5.17802 5.21218 5.27022 5.31601 5.38508 5.42544 5.51052 5.65443 5.75186 5.80916 5.93577 5.99322 6.03757 6.16390 6.33890 6.48332 6.59508 6.69757 6.77933 6.86505 7.05514 7.10320 7.32640 7.42057 7.43714 7.60884 7.80805 8.33602 8.65631 8.83495 9.19463 9.49302 10.99260 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022177 B = 0.003745 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.279429 B = 7474.140350 C = 8272.239388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.061 0.939 4 C -0.158 4.158 5 C 0.166 3.834 6 H 0.087 0.913 7 N -0.749 5.749 8 C 0.698 3.302 9 O -0.604 6.604 10 N -0.720 5.720 11 C 0.183 3.817 12 C 0.027 3.973 13 C -0.500 4.500 14 H 0.059 0.941 15 C 0.074 3.926 16 N -0.874 5.874 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.210 4.210 22 C -0.147 4.147 23 C -0.167 4.167 24 C 0.066 3.934 25 O -0.382 6.382 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.393 0.607 32 H 0.396 0.604 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.024 -0.658 -13.177 17.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.078 0.922 4 C -0.196 4.196 5 C 0.060 3.940 6 H 0.105 0.895 7 N -0.405 5.405 8 C 0.398 3.602 9 O -0.484 6.484 10 N -0.372 5.372 11 C 0.059 3.941 12 C 0.026 3.974 13 C -0.538 4.538 14 H 0.077 0.923 15 C -0.130 4.130 16 N -0.510 5.510 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.247 4.247 22 C -0.185 4.185 23 C -0.206 4.206 24 C -0.012 4.012 25 O -0.301 6.301 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.227 0.773 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.364 0.239 -13.705 17.805 hybrid contribution -0.697 -0.376 1.596 1.782 sum -12.061 -0.137 -12.109 17.092 Atomic orbital electron populations 1.21763 0.92878 1.02988 1.02489 1.22030 0.95117 0.95136 0.84536 0.92152 1.22545 0.95125 1.02641 0.99279 1.20670 0.92489 0.96387 0.84493 0.89533 1.45158 1.15458 1.45234 1.34633 1.16067 0.81456 0.81763 0.80936 1.90863 1.57194 1.38139 1.62218 1.45170 1.18314 1.42579 1.31178 1.20824 0.79325 1.00436 0.93529 1.19041 0.94863 0.89290 0.94172 1.20344 1.13212 1.16989 1.03230 0.92268 1.24984 0.95104 0.95127 0.97828 1.69978 1.23373 1.24266 1.33353 0.86628 0.81269 0.77456 0.82858 1.20700 1.21192 1.19864 1.22975 1.08274 0.95290 0.98179 1.22493 0.93013 1.02863 1.00130 1.22649 1.02445 1.00558 0.94992 1.22544 0.80483 0.99875 0.98266 1.87911 1.21322 1.77986 1.42920 0.91761 0.90990 0.91792 0.90508 0.90119 0.77323 0.77009 0.91531 0.94513 0.92859 0.90458 0.91694 0.91751 0.89707 0.90046 0.91044 0.92920 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.57 37.16 0.36 -0.73 16 2 C 0.09 0.85 3.26 -26.67 -0.09 0.77 16 3 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.16 -1.55 4.90 -26.59 -0.13 -1.68 16 5 C 0.17 2.09 2.54 -67.75 -0.17 1.92 16 6 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 7 N -0.75 -10.65 5.09 -58.50 -0.30 -10.95 16 8 C 0.70 13.32 8.53 -86.92 -0.74 12.57 16 9 O -0.60 -13.80 16.01 5.28 0.08 -13.71 16 10 N -0.72 -14.12 5.48 -65.23 -0.36 -14.48 16 11 C 0.18 4.19 5.50 -4.04 -0.02 4.17 16 12 C 0.03 0.64 1.40 -155.66 -0.22 0.42 16 13 C -0.50 -12.79 8.57 -34.44 -0.30 -13.08 16 14 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 15 C 0.07 1.95 5.44 -17.82 -0.10 1.85 16 16 N -0.87 -24.21 12.85 55.43 0.71 -23.50 16 17 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.21 -4.37 9.95 -26.74 -0.27 -4.63 16 22 C -0.15 -3.36 9.39 -26.73 -0.25 -3.61 16 23 C -0.17 -1.97 5.72 -26.59 -0.15 -2.13 16 24 C 0.07 0.67 6.84 37.20 0.25 0.93 16 25 O -0.38 -4.22 10.41 -35.23 -0.37 -4.59 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.39 4.60 8.62 -40.82 -0.35 4.25 16 32 H 0.40 7.08 8.34 -40.82 -0.34 6.73 16 33 H 0.07 1.76 8.14 -51.93 -0.42 1.33 16 34 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 38 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -30.22 353.22 -9.14 -39.36 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.39 Total: 10.35 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.82 Total: -3.24 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.06 Total: -48.93 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.28 Total: -18.30 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.22 -9.14 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430896119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.163 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds