Wall clock time and date at job start Tue Mar 31 2020 06:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.48663 * 2 1 4 4 C 1.53105 * 109.48293 * 119.93934 * 2 1 3 5 5 C 1.53171 * 109.15882 * 177.50588 * 4 2 1 6 6 H 1.09001 * 109.54498 * 63.06030 * 5 4 2 7 7 N 1.46498 * 109.54758 * 183.24358 * 5 4 2 8 8 C 1.34770 * 120.00223 * 204.82365 * 7 5 4 9 9 O 1.21595 * 119.99953 * 359.97438 * 8 7 5 10 10 N 1.34780 * 120.00399 * 179.97438 * 8 7 5 11 11 C 1.46493 * 120.00287 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47036 * 184.79013 * 11 10 8 13 13 C 1.50692 * 115.55016 * 294.81752 * 12 11 10 14 14 H 1.08002 * 120.00113 * 99.48121 * 13 12 11 15 15 C 1.37879 * 119.99926 * 279.20564 * 13 12 11 16 16 N 1.31509 * 120.00406 * 355.32457 * 15 13 12 17 17 Si 1.86810 * 119.99823 * 175.32663 * 15 13 12 18 18 H 1.48500 * 109.46903 * 89.99877 * 17 15 13 19 19 H 1.48493 * 109.46965 * 209.99884 * 17 15 13 20 20 H 1.48497 * 109.46890 * 330.00046 * 17 15 13 21 21 C 1.52997 * 117.51909 * 80.52228 * 12 11 10 22 22 C 1.52994 * 60.00384 * 107.47928 * 21 12 11 23 23 C 1.53178 * 109.10772 * 303.15487 * 5 4 2 24 24 C 1.53091 * 109.16651 * 56.93483 * 23 5 4 25 25 O 1.42897 * 109.48168 * 239.97316 * 2 1 3 26 26 H 1.09000 * 109.46835 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46980 * 300.02646 * 1 2 3 28 28 H 1.09000 * 109.46738 * 60.02845 * 1 2 3 29 29 H 1.08995 * 109.45043 * 57.64194 * 4 2 1 30 30 H 1.09006 * 109.59731 * 297.45130 * 4 2 1 31 31 H 0.96995 * 119.99864 * 24.81549 * 7 5 4 32 32 H 0.97003 * 119.99358 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47459 * 64.78650 * 11 10 8 34 34 H 1.09004 * 109.47203 * 304.78954 * 11 10 8 35 35 H 0.96998 * 120.00343 * 185.00416 * 16 15 13 36 36 H 1.08997 * 117.49957 * 214.97404 * 21 12 11 37 37 H 1.09008 * 117.49760 * 359.97438 * 21 12 11 38 38 H 1.09005 * 117.49918 * 252.51013 * 22 21 12 39 39 H 1.08997 * 117.49844 * 107.48801 * 22 21 12 40 40 H 1.09001 * 109.52517 * 176.84172 * 23 5 4 41 41 H 1.09006 * 109.52184 * 296.96327 * 23 5 4 42 42 H 1.08994 * 109.47813 * 62.37258 * 24 23 5 43 43 H 1.08998 * 109.48099 * 182.39620 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0407 -0.7204 1.2508 5 6 3.5711 -0.7708 1.2122 6 1 3.9703 0.2430 1.2416 7 7 4.0659 -1.5259 2.3660 8 6 5.3098 -1.3029 2.8343 9 8 6.0216 -0.4752 2.2988 10 7 5.7648 -1.9972 3.8961 11 6 7.1167 -1.7543 4.4054 12 6 7.4248 -2.7473 5.5279 13 6 6.5832 -2.6058 6.7699 14 1 5.7398 -3.2616 6.9283 15 6 6.8934 -1.6430 7.7068 16 7 7.9756 -0.9098 7.5628 17 14 5.7764 -1.3801 9.1809 18 1 6.2167 -2.2543 10.2977 19 1 5.8459 0.0406 9.6074 20 1 4.3789 -1.7177 8.8094 21 6 7.8573 -4.1583 5.1245 22 6 8.8809 -3.1817 5.7069 23 6 4.0177 -1.4600 -0.0808 24 6 3.4308 -0.7092 -1.2790 25 8 2.0067 -0.6741 -1.1664 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5142 0.8898 28 1 -0.3633 0.5134 -0.8903 29 1 1.6432 -1.7350 1.2730 30 1 1.7164 -0.1815 2.1411 31 1 3.4981 -2.1863 2.7930 32 1 5.1967 -2.6572 4.3235 33 1 7.1822 -0.7373 4.7918 34 1 7.8377 -1.8833 3.5981 35 1 8.2330 -0.2834 8.2572 36 1 7.5331 -4.9844 5.7574 37 1 7.9220 -4.3797 4.0591 38 1 9.6193 -2.7604 5.0246 39 1 9.2301 -3.3652 6.7230 40 1 5.1059 -1.4497 -0.1421 41 1 3.6624 -2.4905 -0.0859 42 1 3.8193 0.3090 -1.2957 43 1 3.7103 -1.2200 -2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430896119.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:12 Heat of formation + Delta-G solvation = -87.614014 kcal Electronic energy + Delta-G solvation = -22559.944952 eV Core-core repulsion = 19218.478513 eV Total energy + Delta-G solvation = -3341.466438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30630 -40.11764 -38.53633 -36.22678 -34.95761 -33.97657 -33.73042 -32.32054 -28.74222 -27.93571 -26.95131 -24.81923 -23.31900 -22.90768 -21.66192 -21.44016 -21.21234 -19.24806 -18.13821 -17.38300 -17.27527 -16.72948 -16.64128 -16.31718 -15.82266 -15.74170 -15.40597 -15.03051 -14.89274 -14.42021 -14.34599 -13.70189 -13.48433 -13.44632 -13.15215 -12.94245 -12.83635 -12.80522 -12.45506 -12.35801 -12.06397 -12.02653 -11.94806 -11.51559 -11.40227 -11.22258 -10.93848 -10.57686 -10.45157 -10.26933 -10.03186 -9.60869 -8.08682 -6.22578 1.42559 1.45331 1.53168 1.79088 2.22851 2.42888 2.81705 3.19242 3.31331 3.61289 3.64893 3.80476 3.91003 4.09216 4.21573 4.24685 4.34458 4.45845 4.52570 4.55888 4.66916 4.71619 4.74555 4.77488 4.84587 4.96482 5.00156 5.03325 5.04729 5.10476 5.21889 5.28394 5.34245 5.54669 5.57398 5.62297 5.72824 5.79823 6.15125 6.26784 6.37651 6.84703 7.23615 7.47127 7.68022 8.98696 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022177 B = 0.003745 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.279429 B = 7474.140350 C = 8272.239388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 H 0.060 0.940 4 C -0.147 4.147 5 C 0.160 3.840 6 H 0.062 0.938 7 N -0.729 5.729 8 C 0.696 3.304 9 O -0.645 6.645 10 N -0.716 5.716 11 C 0.201 3.799 12 C 0.006 3.994 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.024 3.976 16 N -0.908 5.908 17 Si 0.950 3.050 18 H -0.277 1.277 19 H -0.293 1.293 20 H -0.263 1.263 21 C -0.176 4.176 22 C -0.158 4.158 23 C -0.161 4.161 24 C 0.068 3.932 25 O -0.391 6.391 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.410 0.590 32 H 0.407 0.593 33 H 0.023 0.977 34 H 0.033 0.967 35 H 0.258 0.742 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.327 -1.877 -13.673 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 H 0.078 0.922 4 C -0.185 4.185 5 C 0.055 3.945 6 H 0.080 0.920 7 N -0.385 5.385 8 C 0.396 3.604 9 O -0.528 6.528 10 N -0.369 5.369 11 C 0.075 3.925 12 C 0.005 3.995 13 C -0.541 4.541 14 H 0.083 0.917 15 C -0.176 4.176 16 N -0.545 5.545 17 Si 0.776 3.224 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.187 1.187 21 C -0.213 4.213 22 C -0.197 4.197 23 C -0.200 4.200 24 C -0.009 4.009 25 O -0.310 6.310 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.242 0.758 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.070 0.930 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.735 -1.022 -14.209 19.789 hybrid contribution 0.015 0.003 1.699 1.699 sum -13.720 -1.019 -12.510 18.595 Atomic orbital electron populations 1.21764 0.91148 1.03408 1.03399 1.22197 0.96441 0.94898 0.83798 0.92225 1.22493 0.92423 1.03644 0.99965 1.20843 0.94504 0.94971 0.84166 0.91965 1.45015 1.13754 1.45115 1.34613 1.16218 0.82503 0.81139 0.80547 1.90837 1.58759 1.39845 1.63348 1.44936 1.17419 1.43042 1.31476 1.20365 0.81024 0.97959 0.93106 1.19054 0.95016 0.91371 0.94030 1.20664 1.13276 1.16508 1.03676 0.91744 1.25708 0.96207 0.95155 1.00564 1.70108 1.25107 1.25151 1.34180 0.85682 0.80049 0.76763 0.79912 1.20283 1.21962 1.18694 1.22959 1.05019 0.93837 0.99447 1.22428 0.93202 1.04569 0.99481 1.22565 1.01040 1.01152 0.95250 1.22564 0.80318 0.99851 0.98169 1.87912 1.21356 1.78175 1.43592 0.91555 0.89534 0.91499 0.89262 0.89294 0.75428 0.75775 0.95837 0.94920 0.93252 0.89534 0.89520 0.91309 0.91667 0.92339 0.90249 0.92987 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.57 71.98 0.69 -1.06 16 2 C 0.08 1.43 3.26 30.63 0.10 1.53 16 3 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.15 -2.55 4.90 30.69 0.15 -2.40 16 5 C 0.16 3.90 2.54 45.11 0.11 4.01 16 6 H 0.06 1.84 7.58 -2.39 -0.02 1.83 16 7 N -0.73 -19.82 5.09 -457.25 -2.33 -22.15 16 8 C 0.70 26.42 8.53 179.06 1.53 27.95 16 9 O -0.65 -30.07 16.01 -4.02 -0.06 -30.14 16 10 N -0.72 -27.71 5.48 -478.54 -2.62 -30.34 16 11 C 0.20 9.32 5.50 86.38 0.48 9.80 16 12 C 0.01 0.28 1.40 -52.93 -0.07 0.21 16 13 C -0.50 -25.44 8.57 25.60 0.22 -25.23 16 14 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 15 C 0.02 1.28 5.44 84.66 0.46 1.74 16 16 N -0.91 -51.32 12.85 21.45 0.28 -51.05 16 17 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 18 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 C -0.18 -6.96 9.95 30.59 0.30 -6.66 16 22 C -0.16 -7.24 9.39 30.59 0.29 -6.96 16 23 C -0.16 -3.64 5.72 30.68 0.18 -3.47 16 24 C 0.07 1.31 6.84 72.01 0.49 1.80 16 25 O -0.39 -7.85 10.41 -148.98 -1.55 -9.40 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.41 8.61 8.62 -92.71 -0.80 7.82 16 32 H 0.41 13.91 8.34 -92.71 -0.77 13.14 16 33 H 0.02 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 35 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 36 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 37 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 38 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 39 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.66 8.14 -2.38 -0.02 1.65 16 42 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -65.41 353.22 0.08 -65.32 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.57 Total: 32.62 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.92 Total: 1.26 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -4.68 Total: -103.54 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.61 Total: -39.54 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -65.41 0.08 -65.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430896119.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.290 kcal (2) G-P(sol) polarization free energy of solvation -65.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds