Wall clock time and date at job start Tue Mar 31 2020 06:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.49398 * 2 1 4 4 C 1.53087 * 109.48197 * 120.03450 * 2 1 3 5 5 C 1.53186 * 109.16422 * 177.58559 * 4 2 1 6 6 H 1.08998 * 109.54618 * 183.06228 * 5 4 2 7 7 N 1.46507 * 109.53888 * 62.88512 * 5 4 2 8 8 C 1.34770 * 119.99682 * 154.99944 * 7 5 4 9 9 O 1.21589 * 120.00144 * 0.02562 * 8 7 5 10 10 N 1.34782 * 120.00015 * 180.02562 * 8 7 5 11 11 C 1.46504 * 120.00162 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.46926 * 174.90709 * 11 10 8 13 13 C 1.50701 * 115.54978 * 304.53658 * 12 11 10 14 14 H 1.07993 * 119.99983 * 95.20082 * 13 12 11 15 15 C 1.37881 * 119.99612 * 275.20432 * 13 12 11 16 16 N 1.31513 * 120.00391 * 5.98659 * 15 13 12 17 17 Si 1.86800 * 119.99755 * 185.98982 * 15 13 12 18 18 H 1.48503 * 109.47200 * 59.99688 * 17 15 13 19 19 H 1.48502 * 109.47083 * 300.00062 * 17 15 13 20 20 H 1.48498 * 109.47457 * 179.97438 * 17 15 13 21 21 C 1.52996 * 117.49826 * 90.20877 * 12 11 10 22 22 C 1.52996 * 117.49615 * 158.86831 * 12 11 10 23 23 C 1.53173 * 109.03441 * 303.02121 * 5 4 2 24 24 C 1.53095 * 109.16727 * 56.98018 * 23 5 4 25 25 O 1.42906 * 109.41206 * 302.38899 * 24 23 5 26 26 H 1.09004 * 109.46691 * 299.96644 * 1 2 3 27 27 H 1.08999 * 109.47832 * 59.96652 * 1 2 3 28 28 H 1.09005 * 109.47554 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.52460 * 57.68741 * 4 2 1 30 30 H 1.08993 * 109.57658 * 297.52275 * 4 2 1 31 31 H 0.97002 * 120.00060 * 335.00641 * 7 5 4 32 32 H 0.97000 * 119.99890 * 359.97438 * 10 8 7 33 33 H 1.09004 * 109.46846 * 54.90184 * 11 10 8 34 34 H 1.09000 * 109.46922 * 294.90649 * 11 10 8 35 35 H 0.97001 * 120.00086 * 5.35553 * 16 15 13 36 36 H 1.08999 * 117.49637 * 214.99731 * 21 12 11 37 37 H 1.08998 * 117.49888 * 0.02562 * 21 12 11 38 38 H 1.09005 * 117.50223 * 359.97225 * 22 12 11 39 39 H 1.08998 * 117.50272 * 144.97148 * 22 12 11 40 40 H 1.09005 * 109.51954 * 176.88399 * 23 5 4 41 41 H 1.08997 * 109.52303 * 297.06582 * 23 5 4 42 42 H 1.08994 * 109.48197 * 182.40609 * 24 23 5 43 43 H 1.09006 * 109.47897 * 62.37100 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7224 1.2494 5 6 3.5712 -0.7711 1.2119 6 1 3.9393 -1.3316 2.0712 7 7 4.1059 0.5924 1.2505 8 6 5.3478 0.8159 1.7237 9 8 6.0247 -0.1140 2.1181 10 7 5.8396 2.0703 1.7596 11 6 7.1899 2.3132 2.2735 12 6 7.5483 3.7890 2.0878 13 6 7.4367 4.3127 0.6791 14 1 6.5345 4.8122 0.3586 15 6 8.4865 4.1539 -0.2006 16 7 9.5368 3.4444 0.1501 17 14 8.4170 4.9469 -1.8905 18 1 8.2930 6.4192 -1.7418 19 1 7.2432 4.4240 -2.6347 20 1 9.6598 4.6283 -2.6383 21 6 7.2023 4.7489 3.2278 22 6 8.6604 4.3621 2.9684 23 6 4.0175 -1.4602 -0.0812 24 6 3.4306 -0.7093 -1.2793 25 8 2.0064 -0.6742 -1.1665 26 1 -0.3633 0.5133 0.8903 27 1 -0.3635 0.5143 -0.8896 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6443 -1.7376 1.2707 30 1 1.7150 -0.1855 2.1403 31 1 3.5660 1.3342 0.9355 32 1 5.2998 2.8121 1.4446 33 1 7.9029 1.6947 1.7283 34 1 7.2262 2.0611 3.3333 35 1 9.5405 2.9688 0.9956 36 1 6.8939 5.7592 2.9589 37 1 6.7197 4.3289 4.1103 38 1 9.1365 3.6878 3.6805 39 1 9.3117 5.1176 2.5289 40 1 5.1058 -1.4499 -0.1424 41 1 3.6612 -2.4903 -0.0867 42 1 3.7098 -1.2202 -2.2007 43 1 3.8192 0.3090 -1.2960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430896120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:16 Heat of formation + Delta-G solvation = -69.523725 kcal Electronic energy + Delta-G solvation = -23085.956298 eV Core-core repulsion = 19745.274314 eV Total energy + Delta-G solvation = -3340.681985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.31897 -38.82557 -37.04560 -34.92456 -33.38401 -32.94064 -31.94522 -31.08830 -27.88389 -26.06796 -24.84200 -24.14891 -22.40624 -21.45275 -20.93977 -19.72853 -19.33650 -17.95573 -16.72053 -16.41520 -16.05907 -15.93258 -15.12388 -14.73696 -14.47748 -14.12934 -13.83482 -13.77697 -13.21191 -13.08188 -12.77673 -12.68607 -12.51652 -12.35264 -12.19223 -11.97431 -11.72246 -11.28474 -11.00863 -10.98290 -10.81922 -10.49712 -10.42063 -10.16557 -9.81929 -9.56396 -9.54807 -8.91596 -8.67859 -8.56833 -8.41108 -8.07549 -6.39636 -4.17150 3.12771 3.38370 3.39435 3.58430 3.64526 3.71866 4.45220 4.51183 4.61829 4.70376 4.77745 4.95206 4.99158 5.12180 5.19814 5.27789 5.38317 5.40061 5.45071 5.54898 5.75470 5.82419 5.82715 5.89751 5.95981 5.99300 6.10313 6.12916 6.23536 6.37668 6.52248 6.62017 6.75136 6.84135 7.13263 7.15313 7.18640 7.25534 7.46895 8.14927 8.31193 8.58475 8.79647 9.13298 9.58800 10.98132 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017700 B = 0.004640 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.565344 B = 6032.803167 C = 6694.935902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.084 3.916 3 H 0.056 0.944 4 C -0.156 4.156 5 C 0.164 3.836 6 H 0.091 0.909 7 N -0.749 5.749 8 C 0.700 3.300 9 O -0.603 6.603 10 N -0.716 5.716 11 C 0.178 3.822 12 C 0.005 3.995 13 C -0.575 4.575 14 H 0.051 0.949 15 C 0.031 3.969 16 N -0.898 5.898 17 Si 1.064 2.936 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.282 1.282 21 C -0.195 4.195 22 C -0.170 4.170 23 C -0.167 4.167 24 C 0.063 3.937 25 O -0.381 6.381 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.391 0.609 32 H 0.397 0.603 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.276 0.724 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.834 -5.818 0.712 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.074 0.926 4 C -0.195 4.195 5 C 0.058 3.942 6 H 0.109 0.891 7 N -0.406 5.406 8 C 0.399 3.601 9 O -0.483 6.483 10 N -0.368 5.368 11 C 0.053 3.947 12 C 0.004 3.996 13 C -0.612 4.612 14 H 0.070 0.930 15 C -0.176 4.176 16 N -0.531 5.531 17 Si 0.892 3.108 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.208 1.208 21 C -0.232 4.232 22 C -0.208 4.208 23 C -0.206 4.206 24 C -0.014 4.014 25 O -0.300 6.300 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.098 0.902 31 H 0.225 0.775 32 H 0.231 0.769 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.401 -6.509 -0.427 15.810 hybrid contribution -1.065 0.597 1.333 1.807 sum -15.466 -5.912 0.905 16.582 Atomic orbital electron populations 1.21764 0.93028 1.02888 1.02462 1.22051 0.95054 0.95012 0.85242 0.92578 1.22522 0.95041 1.02899 0.99005 1.20704 0.92037 0.82910 0.98501 0.89098 1.45246 1.16194 1.09045 1.70161 1.16028 0.81288 0.83980 0.78755 1.90866 1.59240 1.42730 1.55445 1.44996 1.18211 1.06165 1.67438 1.20851 0.81279 0.97237 0.95290 1.19337 0.98911 0.88984 0.92406 1.21131 1.04255 1.41633 0.94189 0.93043 1.25731 0.92465 0.95830 1.03577 1.70717 1.29876 1.27486 1.25049 0.83626 0.76056 0.75872 0.75253 1.21477 1.21541 1.20771 1.22916 0.99006 1.00834 1.00435 1.22725 0.91086 1.03805 1.03217 1.22585 1.02641 0.99942 0.95465 1.22550 0.80266 1.00276 0.98308 1.87914 1.21476 1.77899 1.42739 0.91108 0.91803 0.91806 0.89609 0.90247 0.77505 0.76894 0.91985 0.94740 0.91304 0.90107 0.91434 0.91341 0.89512 0.89903 0.90505 0.88881 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.56 37.16 0.36 -0.79 16 2 C 0.08 0.83 3.09 -26.69 -0.08 0.75 16 3 H 0.06 0.55 6.71 -51.93 -0.35 0.20 16 4 C -0.16 -1.50 5.07 -26.59 -0.13 -1.64 16 5 C 0.16 2.08 2.82 -67.74 -0.19 1.89 16 6 H 0.09 1.29 7.57 -51.93 -0.39 0.90 16 7 N -0.75 -10.70 4.40 -58.49 -0.26 -10.96 16 8 C 0.70 13.37 8.54 -86.92 -0.74 12.63 16 9 O -0.60 -13.76 16.00 5.29 0.08 -13.67 16 10 N -0.72 -14.09 5.36 -65.22 -0.35 -14.44 16 11 C 0.18 4.00 5.49 -4.04 -0.02 3.97 16 12 C 0.00 0.10 1.03 -155.66 -0.16 -0.06 16 13 C -0.57 -14.76 8.26 -34.44 -0.28 -15.04 16 14 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 15 C 0.03 0.83 5.39 -17.82 -0.10 0.74 16 16 N -0.90 -25.85 13.46 55.43 0.75 -25.11 16 17 Si 1.06 24.11 29.91 -169.99 -5.08 19.03 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 C -0.19 -4.00 9.93 -26.70 -0.27 -4.26 16 22 C -0.17 -3.79 8.90 -26.70 -0.24 -4.03 16 23 C -0.17 -2.11 5.80 -26.59 -0.15 -2.27 16 24 C 0.06 0.76 6.68 37.21 0.25 1.01 16 25 O -0.38 -4.60 10.41 -35.23 -0.37 -4.97 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.39 4.76 7.08 -40.82 -0.29 4.47 16 32 H 0.40 7.23 8.17 -40.82 -0.33 6.89 16 33 H 0.06 1.59 7.51 -51.93 -0.39 1.20 16 34 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.28 7.94 6.13 -40.82 -0.25 7.69 16 36 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.71 7.75 -51.93 -0.40 0.31 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -30.74 345.97 -8.89 -39.62 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.11 Total: 12.38 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -1.77 Total: -7.09 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.14 Total: -50.50 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.28 Total: -18.64 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -5.08 Total: 19.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.74 -8.89 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430896120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.900 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds