Wall clock time and date at job start Tue Mar 31 2020 07:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.99963 * 2 1 4 4 C 1.54318 * 109.88566 * 238.90623 * 2 1 3 5 5 H 1.09001 * 110.72332 * 144.23515 * 4 2 1 6 6 C 1.52993 * 110.72095 * 21.13735 * 4 2 1 7 7 O 1.42901 * 109.47642 * 175.00145 * 6 4 2 8 8 C 1.55166 * 102.94158 * 262.77427 * 4 2 1 9 9 C 1.55123 * 101.48430 * 324.33011 * 8 4 2 10 10 N 1.47027 * 109.88552 * 121.09411 * 2 1 3 11 11 C 1.34779 * 125.64906 * 300.44816 * 10 2 1 12 12 O 1.21593 * 119.99693 * 4.83831 * 11 10 2 13 13 N 1.34770 * 119.99951 * 184.83872 * 11 10 2 14 14 C 1.46502 * 119.99806 * 185.07235 * 13 11 10 15 15 C 1.52998 * 109.47165 * 184.86580 * 14 13 11 16 16 C 1.50703 * 115.54764 * 281.23562 * 15 14 13 17 17 H 1.08008 * 120.00049 * 140.10088 * 16 15 14 18 18 C 1.37870 * 120.00106 * 320.09483 * 16 15 14 19 19 N 1.31515 * 120.00178 * 342.24440 * 18 16 15 20 20 Si 1.86805 * 120.00077 * 162.24296 * 18 16 15 21 21 H 1.48496 * 109.47301 * 60.00314 * 20 18 16 22 22 H 1.48503 * 109.47089 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47047 * 300.00127 * 20 18 16 24 24 C 1.53004 * 117.50121 * 66.90439 * 15 14 13 25 25 C 1.53000 * 60.02885 * 107.50421 * 24 15 14 26 26 H 1.09003 * 109.47486 * 300.35444 * 1 2 3 27 27 H 1.09002 * 109.47476 * 60.36079 * 1 2 3 28 28 H 1.09000 * 109.47337 * 180.35696 * 1 2 3 29 29 H 1.09002 * 109.47092 * 295.00023 * 6 4 2 30 30 H 1.08998 * 109.47660 * 54.99866 * 6 4 2 31 31 H 0.96696 * 114.00599 * 179.97438 * 7 6 4 32 32 H 1.08997 * 110.99832 * 82.57026 * 8 4 2 33 33 H 1.09000 * 110.99839 * 206.38250 * 8 4 2 34 34 H 1.08999 * 110.49958 * 278.45222 * 9 8 4 35 35 H 1.09001 * 110.34594 * 156.05881 * 9 8 4 36 36 H 0.96996 * 120.00297 * 5.07278 * 13 11 10 37 37 H 1.09000 * 109.46864 * 64.86383 * 14 13 11 38 38 H 1.09004 * 109.47318 * 304.86812 * 14 13 11 39 39 H 0.97000 * 119.99831 * 175.01340 * 19 18 16 40 40 H 1.08998 * 117.49796 * 215.00860 * 24 15 14 41 41 H 1.08999 * 117.49196 * 0.02562 * 24 15 14 42 42 H 1.08999 * 117.49728 * 107.51159 * 25 24 15 43 43 H 1.09011 * 117.49670 * 252.52044 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2427 5 1 2.9639 -0.2812 -1.6200 6 6 0.9839 -0.8049 -2.3338 7 8 1.5336 -1.3995 -3.5113 8 6 2.3519 -2.1695 -0.6923 9 6 2.8613 -1.8465 0.7368 10 7 2.0300 -0.7140 1.1839 11 6 1.7753 -0.3845 2.4658 12 8 1.0069 0.5233 2.7189 13 7 2.3722 -1.0611 3.4669 14 6 2.0123 -0.7785 4.8586 15 6 2.9135 -1.5882 5.7929 16 6 2.5428 -3.0396 5.9570 17 1 3.3157 -3.7929 6.0003 18 6 1.2171 -3.4061 6.0518 19 7 0.3056 -2.5058 6.3491 20 14 0.7154 -5.1814 5.7581 21 1 1.4012 -6.0586 6.7406 22 1 -0.7551 -5.3131 5.9180 23 1 1.1012 -5.5835 4.3816 24 6 4.4009 -1.2310 5.8247 25 6 3.5021 -0.8670 7.0081 26 1 -0.3634 0.5193 0.8868 27 1 -0.3634 0.5082 -0.8932 28 1 -0.3634 -1.0276 0.0064 29 1 0.1407 -1.4014 -1.9854 30 1 0.6444 0.2055 -2.5616 31 1 0.9088 -1.4675 -4.2461 32 1 1.4452 -2.7736 -0.6604 33 1 3.1266 -2.6620 -1.2800 34 1 3.9123 -1.5588 0.7115 35 1 2.7178 -2.7048 1.3933 36 1 3.0401 -1.7352 3.2660 37 1 0.9716 -1.0548 5.0279 38 1 2.1431 0.2850 5.0589 39 1 -0.6339 -2.7471 6.3449 40 1 5.1113 -2.0458 5.9641 41 1 4.7373 -0.4189 5.1801 42 1 3.6213 -1.4423 7.9262 43 1 3.2470 0.1843 7.1416 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431195049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:09 Heat of formation + Delta-G solvation = -52.056673 kcal Electronic energy + Delta-G solvation = -23221.670849 eV Core-core repulsion = 19881.746293 eV Total energy + Delta-G solvation = -3339.924556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17408 -38.18033 -36.79266 -36.16314 -33.34282 -32.23501 -31.83318 -30.97786 -27.06440 -25.97709 -25.25661 -24.33118 -22.63892 -21.24090 -19.92157 -19.28550 -18.86072 -17.89971 -17.55274 -16.19368 -15.91967 -15.36132 -15.08261 -14.75259 -14.29986 -14.12564 -13.65398 -13.48856 -13.33080 -13.04073 -12.64556 -12.50863 -12.37840 -12.19408 -11.70725 -11.61676 -11.43440 -11.06304 -10.92115 -10.84974 -10.73552 -10.67093 -10.50438 -10.30368 -10.07381 -9.63423 -9.30255 -9.21409 -8.76623 -8.44266 -8.16915 -7.77364 -6.15001 -4.15069 3.06773 3.24733 3.32422 3.33525 3.83651 3.93542 4.33887 4.44883 4.52167 4.68508 4.90175 5.00295 5.13791 5.20180 5.25341 5.32243 5.42831 5.50783 5.55741 5.63029 5.76852 5.83480 5.91325 6.00779 6.10706 6.18358 6.32172 6.41447 6.54320 6.63179 6.65726 6.71483 6.94729 7.05076 7.30083 7.37036 7.53380 7.57051 7.70040 7.91163 8.33750 8.68632 8.83023 9.30770 9.44659 10.89464 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.004805 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.103201 B = 5826.247252 C = 6386.521056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.165 3.835 3 H 0.071 0.929 4 C -0.098 4.098 5 H 0.090 0.910 6 C 0.086 3.914 7 O -0.575 6.575 8 C -0.118 4.118 9 C 0.097 3.903 10 N -0.640 5.640 11 C 0.718 3.282 12 O -0.598 6.598 13 N -0.720 5.720 14 C 0.165 3.835 15 C 0.039 3.961 16 C -0.496 4.496 17 H 0.061 0.939 18 C 0.075 3.925 19 N -0.864 5.864 20 Si 0.884 3.116 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.208 4.208 25 C -0.190 4.190 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.379 0.621 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.393 0.607 37 H 0.109 0.891 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.287 1.680 -16.649 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.060 3.940 3 H 0.089 0.911 4 C -0.117 4.117 5 H 0.108 0.892 6 C 0.009 3.991 7 O -0.380 6.380 8 C -0.156 4.156 9 C -0.027 4.027 10 N -0.380 5.380 11 C 0.420 3.580 12 O -0.477 6.477 13 N -0.373 5.373 14 C 0.042 3.958 15 C 0.038 3.962 16 C -0.533 4.533 17 H 0.079 0.921 18 C -0.129 4.129 19 N -0.500 5.500 20 Si 0.711 3.289 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.246 4.246 25 C -0.228 4.228 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.225 0.775 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.226 0.774 37 H 0.126 0.874 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.004 2.348 -15.811 16.110 hybrid contribution -0.405 -1.218 -0.499 1.377 sum 1.599 1.130 -16.311 16.428 Atomic orbital electron populations 1.22284 0.95116 1.02313 1.02996 1.21115 0.94503 0.95315 0.83064 0.91056 1.22197 0.99060 0.97136 0.93295 0.89183 1.22273 0.95138 0.96733 0.84999 1.86452 1.42877 1.84405 1.24290 1.22785 1.02131 0.95974 0.94739 1.22318 0.94766 0.89879 0.95701 1.47632 1.54506 1.31989 1.03859 1.15522 0.81136 0.82403 0.78985 1.90844 1.40788 1.33548 1.82499 1.45274 1.43828 1.41913 1.06240 1.21071 1.03045 0.95562 0.76074 1.19152 0.88082 0.94870 0.94060 1.20452 0.91997 0.89823 1.51021 0.92057 1.24914 0.96667 0.97393 0.93894 1.69970 1.01374 1.34706 1.43932 0.86785 0.77515 0.85577 0.78983 1.20142 1.21226 1.20178 1.22856 0.96050 1.02197 1.03470 1.22934 1.06867 0.99133 0.93900 0.90202 0.92277 0.92576 0.92843 0.93244 0.77475 0.90636 0.89806 0.91728 0.90397 0.77397 0.87373 0.94848 0.92573 0.90579 0.91389 0.90141 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 7.98 37.15 0.30 -1.97 16 2 C 0.16 2.23 3.46 -66.96 -0.23 1.99 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.10 -1.04 3.13 -88.79 -0.28 -1.32 16 5 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 6 C 0.09 0.77 5.17 37.15 0.19 0.96 16 7 O -0.57 -5.07 13.60 -35.23 -0.48 -5.55 16 8 C -0.12 -1.29 6.49 -24.46 -0.16 -1.45 16 9 C 0.10 1.26 6.46 -2.41 -0.02 1.24 16 10 N -0.64 -10.37 3.08 -168.56 -0.52 -10.89 16 11 C 0.72 14.91 8.29 -86.92 -0.72 14.19 16 12 O -0.60 -14.41 15.06 5.28 0.08 -14.33 16 13 N -0.72 -15.20 5.47 -65.22 -0.36 -15.56 16 14 C 0.17 3.99 5.36 -4.04 -0.02 3.97 16 15 C 0.04 0.94 1.67 -155.62 -0.26 0.68 16 16 C -0.50 -12.90 8.98 -34.44 -0.31 -13.21 16 17 H 0.06 1.58 7.88 -52.48 -0.41 1.17 16 18 C 0.08 1.99 5.11 -17.82 -0.09 1.90 16 19 N -0.86 -23.93 11.15 55.43 0.62 -23.31 16 20 Si 0.88 20.39 29.58 -169.99 -5.03 15.37 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 C -0.21 -4.35 9.93 -26.73 -0.27 -4.62 16 25 C -0.19 -4.28 9.89 -26.70 -0.26 -4.55 16 26 H 0.08 1.35 6.60 -51.93 -0.34 1.01 16 27 H 0.06 0.61 6.57 -51.93 -0.34 0.27 16 28 H 0.06 0.76 7.59 -51.93 -0.39 0.36 16 29 H 0.05 0.47 6.82 -51.93 -0.35 0.12 16 30 H 0.05 0.39 7.31 -51.93 -0.38 0.01 16 31 H 0.38 1.64 9.12 45.56 0.42 2.06 16 32 H 0.07 0.85 7.94 -51.93 -0.41 0.44 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.06 7.57 -51.93 -0.39 0.67 16 36 H 0.39 7.61 7.15 -40.82 -0.29 7.31 16 37 H 0.11 2.99 5.55 -51.93 -0.29 2.70 16 38 H 0.03 0.82 7.92 -51.93 -0.41 0.41 16 39 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 40 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.07 1.44 8.10 -51.92 -0.42 1.02 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -31.06 342.61 -8.77 -39.83 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.12 Total: 11.45 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.13 Total: -2.17 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.26 Total: -49.76 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.40 Total: -19.88 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.06 -8.77 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431195049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.229 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds