Wall clock time and date at job start Tue Mar 31 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.32637 * 2 1 4 4 C 1.54905 * 110.46206 * 122.29842 * 2 1 3 5 5 H 1.09004 * 111.00231 * 37.81792 * 4 2 1 6 6 C 1.52996 * 111.00578 * 273.97280 * 4 2 1 7 7 O 1.42898 * 109.47523 * 175.00004 * 6 4 2 8 8 C 1.55160 * 101.58454 * 155.89338 * 4 2 1 9 9 C 1.54324 * 102.94117 * 324.49896 * 8 4 2 10 10 N 1.47020 * 107.27216 * 22.19043 * 9 8 4 11 11 C 1.34775 * 125.64780 * 181.03581 * 10 9 8 12 12 O 1.21588 * 119.99785 * 175.18778 * 11 10 9 13 13 N 1.34768 * 120.00143 * 355.18143 * 11 10 9 14 14 C 1.46501 * 120.00367 * 185.00457 * 13 11 10 15 15 C 1.52994 * 109.47584 * 185.01213 * 14 13 11 16 16 C 1.50701 * 115.54925 * 275.58981 * 15 14 13 17 17 H 1.08005 * 119.99913 * 114.73070 * 16 15 14 18 18 C 1.37881 * 120.00116 * 294.73376 * 16 15 14 19 19 N 1.31513 * 119.99563 * 352.08434 * 18 16 15 20 20 Si 1.86798 * 119.99948 * 172.08272 * 18 16 15 21 21 H 1.48504 * 109.46906 * 90.00534 * 20 18 16 22 22 H 1.48506 * 109.46955 * 210.00072 * 20 18 16 23 23 H 1.48494 * 109.47298 * 330.00202 * 20 18 16 24 24 C 1.52995 * 117.50143 * 129.87979 * 15 14 13 25 25 C 1.52995 * 60.00174 * 252.50899 * 24 15 14 26 26 H 1.09001 * 109.47135 * 179.29840 * 1 2 3 27 27 H 1.08996 * 109.46901 * 299.29942 * 1 2 3 28 28 H 1.09000 * 109.47070 * 59.30385 * 1 2 3 29 29 H 1.09008 * 109.47038 * 294.99589 * 6 4 2 30 30 H 1.09002 * 109.47765 * 54.99382 * 6 4 2 31 31 H 0.96699 * 114.00300 * 180.02562 * 7 6 4 32 32 H 1.08997 * 110.72173 * 206.13441 * 8 4 2 33 33 H 1.09003 * 110.86827 * 82.93594 * 8 4 2 34 34 H 1.08997 * 109.88262 * 262.77311 * 9 8 4 35 35 H 1.09004 * 110.00950 * 141.67863 * 9 8 4 36 36 H 0.96999 * 120.00114 * 5.01452 * 13 11 10 37 37 H 1.08999 * 109.46903 * 305.01158 * 14 13 11 38 38 H 1.09002 * 109.46825 * 65.00945 * 14 13 11 39 39 H 0.97001 * 119.99562 * 185.00406 * 19 18 16 40 40 H 1.09001 * 117.50070 * 0.02562 * 24 15 14 41 41 H 1.09007 * 117.49821 * 145.02140 * 24 15 14 42 42 H 1.09001 * 117.50321 * 252.50922 * 25 24 15 43 43 H 1.09007 * 117.49730 * 107.48741 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7755 1.2268 5 1 1.4549 -1.6486 1.4403 6 6 2.1705 0.1359 2.4517 7 8 2.5608 -0.6358 3.5893 8 6 3.4803 -1.1971 0.7318 9 6 3.2508 -1.4740 -0.7689 10 7 2.0431 -0.7373 -1.1691 11 6 1.4959 -0.7358 -2.4007 12 8 0.4441 -0.1586 -2.5980 13 7 2.1146 -1.3740 -3.4137 14 6 1.5788 -1.2812 -4.7741 15 6 2.3864 -2.1892 -5.7035 16 6 3.6519 -1.5892 -6.2599 17 1 4.6114 -2.0029 -5.9865 18 6 3.5849 -0.5120 -7.1180 19 7 2.4201 -0.1061 -7.5739 20 14 5.1487 0.3706 -7.6328 21 1 5.6903 -0.2593 -8.8637 22 1 4.8453 1.7995 -7.9004 23 1 6.1534 0.2734 -6.5437 24 6 1.6081 -3.1543 -6.6000 25 6 2.3902 -3.6885 -5.3985 26 1 -0.3633 -1.0276 -0.0126 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5246 -0.8837 29 1 2.9128 0.9127 2.2676 30 1 1.2012 0.5972 2.6408 31 1 2.6432 -0.1214 4.4040 32 1 3.8149 -2.0993 1.2437 33 1 4.1983 -0.3885 0.8695 34 1 3.1043 -2.5419 -0.9307 35 1 4.1064 -1.1255 -1.3476 36 1 2.9146 -1.8950 -3.2422 37 1 0.5351 -1.5956 -4.7757 38 1 1.6483 -0.2506 -5.1224 39 1 2.3782 0.6042 -8.2332 40 1 0.5205 -3.1420 -6.5279 41 1 2.0113 -3.3553 -7.5926 42 1 3.3079 -4.2409 -5.6005 43 1 1.8172 -4.0279 -4.5355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431195050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:12 Heat of formation + Delta-G solvation = -56.504092 kcal Electronic energy + Delta-G solvation = -22950.625854 eV Core-core repulsion = 19610.508443 eV Total energy + Delta-G solvation = -3340.117411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17280 -38.14216 -36.82339 -36.20972 -33.45711 -32.05439 -31.73683 -31.18177 -27.46049 -26.08169 -25.04275 -23.93705 -22.53801 -21.22358 -20.48423 -19.35126 -19.12853 -17.61531 -17.34128 -16.45177 -16.04127 -15.12698 -15.02475 -14.68991 -14.34873 -14.13253 -13.80278 -13.64504 -13.37162 -13.25106 -12.86664 -12.56974 -12.25582 -11.90324 -11.66497 -11.60187 -11.45471 -11.10898 -10.98511 -10.95493 -10.89999 -10.72417 -10.52094 -10.28393 -10.19935 -9.56833 -9.29065 -9.03801 -8.58368 -8.47325 -8.19568 -7.91720 -6.07183 -4.13671 2.99637 3.26401 3.34603 3.36466 3.74383 3.90407 4.35770 4.38931 4.48052 4.64519 4.87317 5.11567 5.13215 5.17520 5.21030 5.26258 5.33003 5.40700 5.54194 5.64534 5.72656 5.82875 5.89739 6.02128 6.07728 6.23768 6.32870 6.38111 6.50312 6.64462 6.67390 6.71506 6.94683 7.06883 7.31795 7.34668 7.46117 7.53707 7.61976 7.85258 8.36192 8.62269 8.85774 9.22963 9.50991 11.00567 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.004105 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.820545 B = 6818.807644 C = 7131.199902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.101 4.101 5 H 0.092 0.908 6 C 0.088 3.912 7 O -0.572 6.572 8 C -0.119 4.119 9 C 0.098 3.902 10 N -0.640 5.640 11 C 0.718 3.282 12 O -0.594 6.594 13 N -0.724 5.724 14 C 0.182 3.818 15 C 0.035 3.965 16 C -0.500 4.500 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.164 4.164 25 C -0.208 4.208 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.379 0.621 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.393 0.607 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -0.551 18.664 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.059 3.941 3 H 0.087 0.913 4 C -0.120 4.120 5 H 0.110 0.890 6 C 0.010 3.990 7 O -0.378 6.378 8 C -0.156 4.156 9 C -0.025 4.025 10 N -0.380 5.380 11 C 0.420 3.580 12 O -0.473 6.473 13 N -0.376 5.376 14 C 0.059 3.941 15 C 0.034 3.966 16 C -0.537 4.537 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.203 4.203 25 C -0.245 4.245 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.226 0.774 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.225 -0.401 17.834 17.840 hybrid contribution 1.269 0.644 0.023 1.423 sum 1.494 0.244 17.857 17.921 Atomic orbital electron populations 1.22195 0.93744 1.02863 1.03125 1.21479 0.95150 0.94550 0.82891 0.91288 1.22408 0.97599 0.99268 0.92708 0.88990 1.22065 0.98643 0.92774 0.85519 1.86472 1.92029 1.39549 1.19702 1.22600 0.96499 1.02595 0.93951 1.21973 0.88287 0.96663 0.95593 1.47591 1.29307 1.52389 1.08719 1.15548 0.83265 0.80208 0.78955 1.90812 1.23038 1.51043 1.82435 1.45349 1.31090 1.53358 1.07836 1.20888 0.94294 1.01871 0.77081 1.19072 0.96380 0.85425 0.95689 1.20419 0.90610 1.14013 1.28667 0.92183 1.24982 0.95915 0.96464 0.95774 1.69968 1.23560 1.28818 1.28620 0.86622 0.83558 0.79181 0.78850 1.20678 1.21125 1.19828 1.22706 0.95996 1.06884 0.94668 1.22872 1.01784 1.00405 0.99475 0.92707 0.92892 0.88901 0.93261 0.93202 0.77435 0.89896 0.90667 0.91767 0.91353 0.77353 0.94288 0.90488 0.92773 0.91628 0.89994 0.90445 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.59 37.16 0.32 -1.89 16 2 C 0.16 2.13 3.25 -66.42 -0.22 1.92 16 3 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 4 C -0.10 -1.04 2.72 -88.47 -0.24 -1.28 16 5 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 6 C 0.09 0.72 6.50 37.16 0.24 0.96 16 7 O -0.57 -4.75 13.62 -35.23 -0.48 -5.23 16 8 C -0.12 -1.18 6.38 -24.89 -0.16 -1.34 16 9 C 0.10 1.21 6.16 -3.07 -0.02 1.19 16 10 N -0.64 -9.99 3.24 -168.72 -0.55 -10.54 16 11 C 0.72 14.39 8.30 -86.93 -0.72 13.66 16 12 O -0.59 -13.75 13.89 5.29 0.07 -13.68 16 13 N -0.72 -14.74 5.42 -65.23 -0.35 -15.09 16 14 C 0.18 4.32 5.53 -4.04 -0.02 4.30 16 15 C 0.04 0.84 1.32 -155.67 -0.20 0.64 16 16 C -0.50 -13.09 8.82 -34.44 -0.30 -13.39 16 17 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 18 C 0.07 1.95 5.22 -17.82 -0.09 1.86 16 19 N -0.87 -24.52 12.61 55.43 0.70 -23.82 16 20 Si 0.89 20.76 29.55 -169.99 -5.02 15.73 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 24 C -0.16 -3.76 9.88 -26.74 -0.26 -4.02 16 25 C -0.21 -4.32 9.78 -26.73 -0.26 -4.59 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.57 7.94 -51.93 -0.41 0.15 16 28 H 0.09 1.58 5.98 -51.93 -0.31 1.27 16 29 H 0.05 0.36 7.98 -51.92 -0.41 -0.06 16 30 H 0.05 0.36 7.94 -51.93 -0.41 -0.05 16 31 H 0.38 1.40 9.12 45.56 0.42 1.82 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.69 7.92 -51.93 -0.41 0.28 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.39 7.29 7.41 -40.82 -0.30 6.98 16 37 H 0.04 0.95 7.87 -51.93 -0.41 0.54 16 38 H 0.08 2.10 7.27 -51.93 -0.38 1.72 16 39 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 40 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 41 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 42 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 348.80 15.07 5.26 5.26 Total: -1.00 -31.30 348.80 -8.71 -40.02 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.39 Total: 9.33 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -1.95 Total: -1.98 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.20 Total: -49.45 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.41 Total: -18.91 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.30 -8.71 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431195050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.487 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds