Wall clock time and date at job start Tue Mar 31 2020 07:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.99635 * 2 1 4 4 C 1.54338 * 109.77556 * 121.16716 * 2 1 3 5 5 H 1.09009 * 110.66483 * 215.88053 * 4 2 1 6 6 C 1.52999 * 110.85191 * 339.02559 * 4 2 1 7 7 O 1.42896 * 109.47192 * 180.14931 * 6 4 2 8 8 C 1.55152 * 103.02247 * 97.49793 * 4 2 1 9 9 C 1.54907 * 101.58158 * 35.30219 * 8 4 2 10 10 N 1.47020 * 109.88194 * 238.90373 * 2 1 3 11 11 C 1.34778 * 125.64880 * 59.56175 * 10 2 1 12 12 O 1.21590 * 119.99926 * 4.73677 * 11 10 2 13 13 N 1.34776 * 120.00219 * 184.73484 * 11 10 2 14 14 C 1.46493 * 120.00188 * 184.94541 * 13 11 10 15 15 C 1.53003 * 109.47176 * 185.10207 * 14 13 11 16 16 C 1.50695 * 115.55150 * 56.70310 * 15 14 13 17 17 H 1.07998 * 120.00175 * 266.63441 * 16 15 14 18 18 C 1.37882 * 119.99991 * 86.62786 * 16 15 14 19 19 N 1.31515 * 119.99965 * 180.78654 * 18 16 15 20 20 Si 1.86796 * 120.00057 * 0.79631 * 18 16 15 21 21 H 1.48498 * 109.47474 * 85.11616 * 20 18 16 22 22 H 1.48510 * 109.46926 * 325.11600 * 20 18 16 23 23 H 1.48499 * 109.46910 * 205.12046 * 20 18 16 24 24 C 1.52997 * 117.49648 * 202.37530 * 15 14 13 25 25 C 1.52999 * 117.49800 * 271.03204 * 15 14 13 26 26 H 1.08999 * 109.47127 * 179.64336 * 1 2 3 27 27 H 1.09004 * 109.47205 * 299.64105 * 1 2 3 28 28 H 1.08994 * 109.47139 * 59.64124 * 1 2 3 29 29 H 1.08998 * 109.47070 * 300.15141 * 6 4 2 30 30 H 1.09006 * 109.46893 * 60.15014 * 6 4 2 31 31 H 0.96699 * 114.00351 * 180.02562 * 7 6 4 32 32 H 1.08999 * 111.00417 * 277.23410 * 8 4 2 33 33 H 1.08997 * 111.03897 * 153.39349 * 8 4 2 34 34 H 1.08998 * 110.36738 * 204.14954 * 9 8 4 35 35 H 1.09010 * 110.36717 * 81.83331 * 9 8 4 36 36 H 0.96999 * 119.99604 * 4.94171 * 13 11 10 37 37 H 1.08997 * 109.47441 * 65.10009 * 14 13 11 38 38 H 1.09006 * 109.46829 * 305.10266 * 14 13 11 39 39 H 0.96997 * 119.99856 * 180.02562 * 19 18 16 40 40 H 1.08999 * 117.49747 * 215.00479 * 24 15 14 41 41 H 1.09004 * 117.50051 * 0.02562 * 24 15 14 42 42 H 1.08998 * 117.49636 * 359.97438 * 25 15 14 43 43 H 1.08997 * 117.49844 * 144.97279 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7517 1.2427 5 1 2.9601 -0.2828 1.6226 6 6 0.9802 -0.8127 2.3326 7 8 1.4949 -1.5103 3.4685 8 6 2.3561 -2.1697 0.6915 9 6 2.8613 -1.8466 -0.7368 10 7 2.0300 -0.7141 -1.1839 11 6 1.7754 -0.3845 -2.4657 12 8 1.1497 0.6264 -2.7207 13 7 2.2144 -1.1753 -3.4649 14 6 2.0329 -0.7632 -4.8589 15 6 2.4993 -1.8861 -5.7876 16 6 1.8283 -3.2198 -5.5827 17 1 2.2773 -3.9560 -4.9324 18 6 0.6411 -3.5002 -6.2254 19 7 0.0476 -4.6582 -6.0345 20 14 -0.1242 -2.2354 -7.3673 21 1 0.4719 -2.3659 -8.7211 22 1 0.1366 -0.8714 -6.8410 23 1 -1.5894 -2.4633 -7.4474 24 6 2.8907 -1.5043 -7.2165 25 6 3.9714 -1.8925 -6.2044 26 1 -0.3633 -1.0276 -0.0064 27 1 -0.3634 0.5083 0.8932 28 1 -0.3633 0.5194 -0.8867 29 1 0.7003 0.1996 2.6241 30 1 0.1036 -1.3365 1.9511 31 1 0.8675 -1.5876 4.2002 32 1 1.4522 -2.7778 0.6578 33 1 3.1325 -2.6598 1.2789 34 1 2.7178 -2.7048 -1.3932 35 1 3.9124 -1.5589 -0.7114 36 1 2.6506 -2.0173 -3.2609 37 1 2.6197 0.1350 -5.0516 38 1 0.9787 -0.5546 -5.0418 39 1 -0.7874 -4.8556 -6.4869 40 1 2.6628 -2.2177 -8.0084 41 1 2.8164 -0.4530 -7.4948 42 1 4.6075 -1.0965 -5.8173 43 1 4.4547 -2.8614 -6.3300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431195051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:16 Heat of formation + Delta-G solvation = -50.449364 kcal Electronic energy + Delta-G solvation = -23141.016586 eV Core-core repulsion = 19801.161727 eV Total energy + Delta-G solvation = -3339.854858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26178 -38.31209 -37.04777 -36.26364 -33.55658 -32.14530 -31.96588 -31.04528 -27.24812 -26.27552 -25.26973 -24.38672 -22.69687 -21.70428 -19.98563 -19.40398 -18.83217 -17.87853 -17.54706 -16.42128 -15.95716 -15.45498 -15.23501 -14.91668 -14.54961 -14.05982 -13.71576 -13.57503 -13.31872 -13.01470 -12.78330 -12.67517 -12.50755 -12.36231 -12.21377 -11.94255 -11.55349 -11.16281 -11.05801 -10.78552 -10.71189 -10.68064 -10.47659 -10.17157 -10.07936 -9.74573 -9.54215 -9.16688 -8.67362 -8.58233 -8.51104 -8.00828 -6.15337 -4.19791 2.95498 3.30240 3.39973 3.45655 3.70487 3.89610 4.39127 4.41269 4.48664 4.59053 4.86798 4.99039 5.09192 5.15009 5.18012 5.22825 5.29922 5.40566 5.53450 5.59599 5.70559 5.74853 5.79619 5.91482 6.02600 6.07074 6.08886 6.15389 6.28237 6.33200 6.43299 6.47837 6.64417 6.73000 7.00878 7.08943 7.27542 7.37126 7.51940 7.68850 8.41108 8.55829 8.83810 9.14894 9.48193 10.95939 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.004365 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.017377 B = 6412.427193 C = 6554.307133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.165 3.835 3 H 0.074 0.926 4 C -0.098 4.098 5 H 0.089 0.911 6 C 0.085 3.915 7 O -0.574 6.574 8 C -0.118 4.118 9 C 0.097 3.903 10 N -0.637 5.637 11 C 0.720 3.280 12 O -0.601 6.601 13 N -0.715 5.715 14 C 0.174 3.826 15 C -0.016 4.016 16 C -0.489 4.489 17 H 0.077 0.923 18 C 0.081 3.919 19 N -0.896 5.896 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.258 1.258 23 H -0.295 1.295 24 C -0.194 4.194 25 C -0.178 4.178 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.379 0.621 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.400 0.600 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.265 0.735 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 6.474 15.143 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.060 3.940 3 H 0.092 0.908 4 C -0.117 4.117 5 H 0.107 0.893 6 C 0.008 3.992 7 O -0.379 6.379 8 C -0.156 4.156 9 C -0.026 4.026 10 N -0.377 5.377 11 C 0.422 3.578 12 O -0.480 6.480 13 N -0.368 5.368 14 C 0.049 3.951 15 C -0.017 4.017 16 C -0.526 4.526 17 H 0.095 0.905 18 C -0.122 4.122 19 N -0.532 5.532 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.182 1.182 23 H -0.222 1.222 24 C -0.232 4.232 25 C -0.216 4.216 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.226 0.774 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.236 0.764 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.840 7.089 14.378 16.484 hybrid contribution -0.822 0.153 -0.322 0.896 sum 3.019 7.242 14.056 16.098 Atomic orbital electron populations 1.22274 0.95170 1.02417 1.02874 1.21128 0.94403 0.95450 0.83016 0.90841 1.22191 0.98996 0.97182 0.93296 0.89256 1.22269 0.95586 0.95448 0.85924 1.86450 1.44738 1.79289 1.27470 1.22728 1.02312 0.95965 0.94571 1.22300 0.94718 0.89742 0.95850 1.47578 1.54221 1.32138 1.03745 1.15473 0.79840 0.83297 0.79145 1.90851 1.46674 1.27936 1.82578 1.44980 1.63289 1.23348 1.05230 1.20973 1.00596 0.94897 0.78596 1.19633 0.94157 0.96003 0.91951 1.20137 1.06446 0.96613 1.29387 0.90501 1.24950 0.96277 0.94939 0.96020 1.69881 1.18036 1.22294 1.43022 0.86873 0.77667 0.83191 0.81490 1.20254 1.18229 1.22195 1.22958 1.05850 0.99900 0.94498 1.22853 0.92476 1.01198 1.05043 0.92308 0.92042 0.90689 0.93359 0.92675 0.77432 0.90492 0.89698 0.90307 0.91641 0.76445 0.94284 0.91800 0.92508 0.89086 0.90729 0.90901 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 7.93 37.16 0.29 -1.90 16 2 C 0.16 2.14 3.42 -66.94 -0.23 1.91 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.10 -1.01 3.15 -88.78 -0.28 -1.29 16 5 H 0.09 0.89 8.14 -51.92 -0.42 0.46 16 6 C 0.09 0.74 5.18 37.16 0.19 0.93 16 7 O -0.57 -4.98 13.50 -35.23 -0.48 -5.45 16 8 C -0.12 -1.26 6.39 -24.59 -0.16 -1.42 16 9 C 0.10 1.22 6.72 -2.53 -0.02 1.20 16 10 N -0.64 -9.94 3.08 -168.68 -0.52 -10.46 16 11 C 0.72 14.27 8.22 -86.92 -0.71 13.56 16 12 O -0.60 -13.79 15.40 5.29 0.08 -13.71 16 13 N -0.72 -14.31 5.31 -65.23 -0.35 -14.66 16 14 C 0.17 3.78 5.38 -4.04 -0.02 3.76 16 15 C -0.02 -0.36 0.95 -155.66 -0.15 -0.51 16 16 C -0.49 -12.87 8.92 -34.44 -0.31 -13.18 16 17 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 18 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 19 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 20 Si 0.88 21.73 24.83 -169.99 -4.22 17.51 16 21 H -0.28 -6.62 7.03 56.52 0.40 -6.22 16 22 H -0.26 -6.21 5.78 56.52 0.33 -5.88 16 23 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 24 C -0.19 -4.02 7.63 -26.70 -0.20 -4.22 16 25 C -0.18 -3.45 9.93 -26.70 -0.27 -3.71 16 26 H 0.06 0.77 7.52 -51.93 -0.39 0.38 16 27 H 0.06 0.61 6.70 -51.93 -0.35 0.26 16 28 H 0.07 1.21 6.90 -51.93 -0.36 0.86 16 29 H 0.05 0.36 7.58 -51.93 -0.39 -0.03 16 30 H 0.06 0.48 6.62 -51.93 -0.34 0.13 16 31 H 0.38 1.61 9.12 45.56 0.42 2.02 16 32 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.04 7.06 -51.93 -0.37 0.67 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.40 7.55 6.59 -40.82 -0.27 7.28 16 37 H 0.04 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.06 1.56 6.44 -51.93 -0.33 1.22 16 39 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 40 H 0.09 1.97 7.11 -51.93 -0.37 1.60 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -32.56 336.45 -7.78 -40.34 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.19 Total: 9.81 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.95 Total: -2.68 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.09 Total: -50.90 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.39 Total: -19.16 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.22 Total: 17.51 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.56 -7.78 -40.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431195051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.109 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds