Wall clock time and date at job start Tue Mar 31 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.32900 * 2 1 4 4 C 1.54479 * 110.47012 * 237.68172 * 2 1 3 5 5 C 1.54512 * 104.06186 * 217.14378 * 4 2 1 6 6 C 1.54476 * 104.06404 * 359.97438 * 5 4 2 7 7 H 1.09000 * 110.37144 * 265.14527 * 6 5 4 8 8 C 1.53003 * 110.37124 * 142.81199 * 6 5 4 9 9 N 1.46497 * 109.47022 * 179.97438 * 8 6 5 10 10 C 1.34771 * 119.99888 * 179.97438 * 9 8 6 11 11 O 1.21595 * 120.00285 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00171 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00232 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47236 * 178.28598 * 13 12 10 15 15 C 1.50699 * 115.55204 * 65.14176 * 14 13 12 16 16 H 1.07999 * 119.99614 * 265.40658 * 15 14 13 17 17 C 1.37877 * 120.00250 * 85.40128 * 15 14 13 18 18 N 1.31521 * 119.99905 * 353.56476 * 17 15 14 19 19 Si 1.86795 * 119.99968 * 173.55728 * 17 15 14 20 20 H 1.48500 * 109.47195 * 60.00637 * 19 17 15 21 21 H 1.48508 * 109.47124 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47344 * 300.00364 * 19 17 15 23 23 C 1.53004 * 117.50091 * 279.46930 * 14 13 12 24 24 C 1.53004 * 117.49889 * 210.81075 * 14 13 12 25 25 O 1.44426 * 104.80282 * 23.98182 * 6 5 4 26 26 H 1.08994 * 109.47668 * 299.20803 * 1 2 3 27 27 H 1.09005 * 109.46938 * 59.21060 * 1 2 3 28 28 H 1.09004 * 109.46926 * 179.20640 * 1 2 3 29 29 H 1.08996 * 110.50786 * 98.50004 * 4 2 1 30 30 H 1.08991 * 110.51175 * 335.78698 * 4 2 1 31 31 H 1.09009 * 110.50736 * 241.35460 * 5 4 2 32 32 H 1.09001 * 110.50905 * 118.65019 * 5 4 2 33 33 H 1.09003 * 109.46781 * 300.00151 * 8 6 5 34 34 H 1.09001 * 109.47154 * 59.99719 * 8 6 5 35 35 H 0.96998 * 120.00284 * 0.02562 * 9 8 6 36 36 H 0.96998 * 120.00001 * 0.02562 * 12 10 9 37 37 H 1.09000 * 109.47038 * 298.28882 * 13 12 10 38 38 H 1.09000 * 109.47184 * 58.28103 * 13 12 10 39 39 H 0.96997 * 119.99645 * 185.06269 * 18 17 15 40 40 H 1.09004 * 117.49432 * 0.02562 * 23 14 13 41 41 H 1.09000 * 117.50031 * 145.01974 * 23 14 13 42 42 H 1.09002 * 117.49873 * 214.97929 * 24 14 13 43 43 H 1.08997 * 117.50092 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7737 -1.2231 5 6 3.3208 -1.5032 -0.6833 6 6 3.3886 -1.0834 0.8017 7 1 4.0524 -0.2276 0.9242 8 6 3.8623 -2.2543 1.6651 9 7 3.9199 -1.8349 3.0676 10 6 4.3130 -2.7077 4.0163 11 8 4.6203 -3.8431 3.7082 12 7 4.3655 -2.3221 5.3067 13 6 4.7934 -3.2707 6.3379 14 6 4.8050 -2.5729 7.6994 15 6 3.4604 -2.1249 8.2117 16 1 3.1245 -1.1139 8.0342 17 6 2.6592 -3.0055 8.9070 18 7 3.0092 -4.2688 9.0143 19 14 1.0766 -2.4045 9.6966 20 1 0.1793 -1.8532 8.6496 21 1 0.4028 -3.5379 10.3799 22 1 1.3897 -1.3446 10.6884 23 6 6.0157 -1.7000 8.0357 24 6 5.8298 -3.0515 8.7298 25 8 2.0332 -0.7216 1.1451 26 1 -0.3634 0.5014 0.8969 27 1 -0.3633 0.5261 -0.8829 28 1 -0.3633 -1.0276 -0.0142 29 1 2.3451 -0.0835 -2.0206 30 1 1.3316 -1.4929 -1.5767 31 1 4.2140 -1.1736 -1.2142 32 1 3.2003 -2.5830 -0.7704 33 1 3.1657 -3.0865 1.5626 34 1 4.8539 -2.5683 1.3391 35 1 3.6745 -0.9293 3.3135 36 1 4.1201 -1.4165 5.5526 37 1 4.1015 -4.1124 6.3668 38 1 5.7953 -3.6319 6.1061 39 1 2.4111 -4.9032 9.4394 40 1 6.8038 -1.6224 7.2866 41 1 5.8398 -0.8018 8.6276 42 1 5.5317 -3.0420 9.7782 43 1 6.4955 -3.8637 8.4378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458733993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:18 Heat of formation + Delta-G solvation = -63.887138 kcal Electronic energy + Delta-G solvation = -22242.433966 eV Core-core repulsion = 18901.996402 eV Total energy + Delta-G solvation = -3340.437564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.98948 -39.07593 -36.72614 -34.57124 -33.16553 -32.48604 -31.93597 -31.69023 -28.11419 -26.02346 -25.04757 -23.55332 -21.70178 -21.19005 -21.14583 -20.08690 -19.31395 -17.63062 -16.89857 -16.34408 -16.15727 -15.57199 -14.90582 -14.81440 -14.56497 -14.07974 -13.94607 -13.76273 -13.29213 -13.13972 -12.82052 -12.58600 -12.39134 -12.15090 -11.90224 -11.63613 -11.51926 -11.35843 -11.10810 -10.95601 -10.91397 -10.87258 -10.50858 -10.22852 -9.95085 -9.67940 -9.45752 -8.92661 -8.75625 -8.44706 -8.20092 -7.88996 -6.02890 -4.11356 3.23986 3.30843 3.36386 3.37844 3.59190 3.89514 4.29395 4.38939 4.40327 4.62266 4.72812 4.90048 4.96413 5.07568 5.17466 5.22218 5.25264 5.34389 5.42226 5.49053 5.54293 5.68649 5.78011 5.81269 5.89010 5.96766 6.08502 6.39160 6.52276 6.65330 6.67264 6.73764 6.86504 6.91859 7.13198 7.40690 7.47493 7.53160 7.68191 7.86136 8.39167 8.75104 8.89101 9.29246 9.55118 11.04989 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.003732 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.767499 B = 7500.724110 C = 8476.957245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.150 4.150 5 C -0.148 4.148 6 C 0.063 3.937 7 H 0.075 0.925 8 C 0.150 3.850 9 N -0.750 5.750 10 C 0.698 3.302 11 O -0.607 6.607 12 N -0.720 5.720 13 C 0.182 3.818 14 C 0.029 3.971 15 C -0.500 4.500 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.875 5.875 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.211 4.211 24 C -0.148 4.148 25 O -0.361 6.361 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 9.257 -18.708 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.188 4.188 5 C -0.186 4.186 6 C 0.005 3.995 7 H 0.093 0.907 8 C 0.025 3.975 9 N -0.407 5.407 10 C 0.398 3.602 11 O -0.487 6.487 12 N -0.372 5.372 13 C 0.059 3.941 14 C 0.028 3.972 15 C -0.538 4.538 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.248 4.248 24 C -0.186 4.186 25 O -0.280 6.280 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.541 7.944 -18.617 20.248 hybrid contribution -1.045 1.109 0.501 1.604 sum -1.586 9.053 -18.116 20.315 Atomic orbital electron populations 1.21800 0.93182 1.03041 1.02419 1.22973 0.95445 0.95370 0.85156 0.91481 1.23002 0.97703 0.99799 0.98313 1.22908 0.98640 1.02107 0.94930 1.23260 0.85223 0.97143 0.93852 0.90740 1.21139 1.01152 0.95426 0.79751 1.44959 1.74180 1.15265 1.06308 1.16027 0.78639 0.84348 0.81172 1.90863 1.57217 1.18886 1.81697 1.45124 1.70941 1.16615 1.04549 1.20835 0.97033 0.91114 0.85135 1.19034 0.89966 0.97111 0.91084 1.20298 1.00528 0.97775 1.35204 0.92296 1.24979 0.97696 0.94936 0.95383 1.69970 1.36200 1.01903 1.42967 0.86694 0.83457 0.78316 0.79720 1.20260 1.21294 1.20234 1.23017 1.02474 0.95076 1.04251 1.22489 1.02792 0.94500 0.98806 1.89246 1.26399 1.74495 1.37895 0.91685 0.91325 0.91714 0.90613 0.90440 0.90219 0.90024 0.91163 0.90650 0.77009 0.77094 0.91260 0.94787 0.92814 0.91663 0.90431 0.89844 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.53 37.16 0.35 -0.82 16 2 C 0.07 0.60 3.91 -25.96 -0.10 0.50 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.15 -1.08 6.63 -25.16 -0.17 -1.24 16 5 C -0.15 -1.16 6.63 -25.16 -0.17 -1.32 16 6 C 0.06 0.64 3.33 -25.95 -0.09 0.56 16 7 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 8 C 0.15 1.98 5.29 -4.04 -0.02 1.96 16 9 N -0.75 -11.64 5.52 -65.22 -0.36 -12.00 16 10 C 0.70 14.16 8.57 -86.92 -0.74 13.42 16 11 O -0.61 -14.59 16.34 5.28 0.09 -14.50 16 12 N -0.72 -14.81 5.48 -65.23 -0.36 -15.17 16 13 C 0.18 4.32 5.50 -4.04 -0.02 4.30 16 14 C 0.03 0.69 1.38 -155.66 -0.21 0.48 16 15 C -0.50 -13.14 8.63 -34.44 -0.30 -13.43 16 16 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 17 C 0.07 2.01 5.39 -17.82 -0.10 1.91 16 18 N -0.87 -24.74 12.91 55.43 0.72 -24.03 16 19 Si 0.89 20.97 29.55 -169.99 -5.02 15.95 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.21 -4.46 9.96 -26.69 -0.27 -4.73 16 24 C -0.15 -3.43 9.42 -26.69 -0.25 -3.69 16 25 O -0.36 -4.33 11.00 -35.23 -0.39 -4.72 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 31 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 5.34 8.49 -40.82 -0.35 4.99 16 36 H 0.40 7.43 8.38 -40.82 -0.34 7.09 16 37 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 38 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.26 7.15 8.32 -40.82 -0.34 6.82 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -31.58 357.10 -9.41 -40.99 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.39 Total: 10.21 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.08 Total: -2.11 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: 0.00 Total: -51.20 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.30 Total: -19.22 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.58 -9.41 -40.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458733993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.897 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds