Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.89745 * 2 1 4 4 C 1.54378 * 109.83221 * 120.93294 * 2 1 3 5 5 C 1.55303 * 102.25479 * 140.87226 * 4 2 1 6 6 C 1.54951 * 100.94235 * 325.86720 * 5 4 2 7 7 H 1.09004 * 110.30690 * 277.43215 * 6 5 4 8 8 C 1.53001 * 110.31155 * 155.35747 * 6 5 4 9 9 N 1.46502 * 109.46737 * 179.97438 * 8 6 5 10 10 C 1.34778 * 119.99847 * 179.97438 * 9 8 6 11 11 O 1.21594 * 119.99770 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00278 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00093 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47074 * 178.28954 * 13 12 10 15 15 C 1.50698 * 115.54796 * 65.14518 * 14 13 12 16 16 H 1.08001 * 119.99843 * 265.40344 * 15 14 13 17 17 C 1.37878 * 120.00352 * 85.40190 * 15 14 13 18 18 N 1.31512 * 119.99874 * 353.55647 * 17 15 14 19 19 Si 1.86797 * 120.00169 * 173.55346 * 17 15 14 20 20 H 1.48497 * 109.46959 * 90.00211 * 19 17 15 21 21 H 1.48497 * 109.47173 * 210.00422 * 19 17 15 22 22 H 1.48499 * 109.47231 * 330.00143 * 19 17 15 23 23 C 1.52996 * 117.49850 * 279.47208 * 14 13 12 24 24 C 1.52997 * 117.49742 * 210.81369 * 14 13 12 25 25 O 1.43237 * 109.83383 * 239.06595 * 2 1 3 26 26 H 1.09002 * 109.47253 * 299.06438 * 1 2 3 27 27 H 1.08995 * 109.47222 * 59.06911 * 1 2 3 28 28 H 1.08999 * 109.46844 * 179.06784 * 1 2 3 29 29 H 1.09000 * 110.85132 * 22.68281 * 4 2 1 30 30 H 1.09003 * 110.84922 * 259.05902 * 4 2 1 31 31 H 1.08997 * 111.12722 * 83.78221 * 5 4 2 32 32 H 1.09001 * 111.12847 * 207.94828 * 5 4 2 33 33 H 1.08995 * 109.46872 * 300.00100 * 8 6 5 34 34 H 1.09002 * 109.46822 * 60.00407 * 8 6 5 35 35 H 0.96997 * 120.00151 * 0.02562 * 9 8 6 36 36 H 0.96997 * 119.99720 * 0.02562 * 12 10 9 37 37 H 1.08996 * 109.47381 * 298.29046 * 13 12 10 38 38 H 1.09003 * 109.47190 * 58.29177 * 13 12 10 39 39 H 0.96996 * 120.00584 * 185.06882 * 18 17 15 40 40 H 1.09002 * 117.50261 * 0.02562 * 23 14 13 41 41 H 1.09003 * 117.49575 * 145.02139 * 23 14 13 42 42 H 1.09005 * 117.49630 * 214.98205 * 24 14 13 43 43 H 1.09001 * 117.50137 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 6 2.0537 -0.7465 1.2457 5 6 3.2730 -1.5221 0.6767 6 6 2.7748 -1.8444 -0.7546 7 1 2.1416 -2.7316 -0.7439 8 6 3.9627 -2.0521 -1.6963 9 7 3.4712 -2.3560 -3.0425 10 6 4.3447 -2.5777 -4.0447 11 8 5.5407 -2.5260 -3.8313 12 7 3.8927 -2.8567 -5.2833 13 6 4.8422 -3.0983 -6.3725 14 6 4.0749 -3.4318 -7.6535 15 6 3.2233 -2.3196 -8.2092 16 1 2.1752 -2.2635 -7.9549 17 6 3.7822 -1.3738 -9.0423 18 7 5.0806 -1.3664 -9.2511 19 14 2.6951 -0.1028 -9.8744 20 1 2.5777 1.0943 -9.0036 21 1 3.2966 0.2879 -11.1746 22 1 1.3469 -0.6803 -10.1064 23 6 3.5616 -4.8638 -7.8169 24 6 4.7462 -4.3749 -8.6538 25 8 2.0160 -0.6926 -1.1557 26 1 -0.3634 0.4992 0.8983 27 1 -0.3633 0.5282 -0.8815 28 1 -0.3633 -1.0275 -0.0167 29 1 1.3013 -1.4349 1.6303 30 1 2.3672 -0.0425 2.0165 31 1 4.1620 -0.8920 0.6506 32 1 3.4573 -2.4348 1.2434 33 1 4.5660 -1.1448 -1.7255 34 1 4.5710 -2.8817 -1.3361 35 1 2.5172 -2.3968 -3.2128 36 1 2.9387 -2.8976 -5.4536 37 1 5.4461 -2.2052 -6.5328 38 1 5.4915 -3.9336 -6.1100 39 1 5.4832 -0.6581 -9.7773 40 1 3.7701 -5.5683 -7.0116 41 1 2.6080 -5.0015 -8.3267 42 1 4.5716 -4.1911 -9.7140 43 1 5.7348 -4.7574 -8.3996 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458734006.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = -64.265428 kcal Electronic energy + Delta-G solvation = -22255.915888 eV Core-core repulsion = 18915.461920 eV Total energy + Delta-G solvation = -3340.453968 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03082 -39.08175 -36.72336 -34.56716 -33.15883 -32.52914 -31.93360 -31.65815 -28.09270 -26.03090 -25.06314 -23.62603 -21.86760 -21.17020 -20.86002 -20.10095 -19.31038 -17.69077 -17.24525 -16.36903 -15.93990 -15.52187 -14.92565 -14.61408 -14.52143 -14.05238 -13.94427 -13.79377 -13.32648 -13.09401 -12.98708 -12.58277 -12.33832 -12.22575 -11.99771 -11.62766 -11.51223 -11.35544 -11.12734 -11.06345 -10.95852 -10.88072 -10.48580 -10.22514 -9.72122 -9.66871 -9.45663 -8.91583 -8.74227 -8.44513 -8.19910 -7.88376 -6.02796 -4.11087 3.22523 3.29823 3.37141 3.39036 3.56920 3.90283 4.17565 4.39659 4.46477 4.48903 4.85387 4.87012 4.96726 5.06859 5.16096 5.25507 5.30097 5.31916 5.40634 5.42807 5.50536 5.64490 5.72928 5.84981 5.95490 5.99855 6.08870 6.39496 6.52645 6.65719 6.74111 6.80051 6.92256 6.93669 7.13476 7.41242 7.48105 7.53546 7.69111 7.86421 8.39471 8.76076 8.89536 9.30165 9.55390 11.05092 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.003701 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.574741 B = 7563.156350 C = 8443.225967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.074 3.926 3 H 0.079 0.921 4 C -0.151 4.151 5 C -0.148 4.148 6 C 0.069 3.931 7 H 0.076 0.924 8 C 0.146 3.854 9 N -0.749 5.749 10 C 0.698 3.302 11 O -0.607 6.607 12 N -0.720 5.720 13 C 0.182 3.818 14 C 0.029 3.971 15 C -0.499 4.499 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.874 5.874 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.211 4.211 24 C -0.148 4.148 25 O -0.368 6.368 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.397 0.603 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.261 0.739 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -0.430 19.650 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.097 0.903 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.011 3.989 7 H 0.094 0.906 8 C 0.021 3.979 9 N -0.406 5.406 10 C 0.398 3.602 11 O -0.487 6.487 12 N -0.372 5.372 13 C 0.059 3.941 14 C 0.028 3.972 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.130 4.130 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.248 4.248 24 C -0.186 4.186 25 O -0.288 6.288 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.230 0.770 36 H 0.229 0.771 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.325 -0.262 19.435 20.440 hybrid contribution -1.365 0.731 -0.445 1.611 sum -7.690 0.469 18.991 20.494 Atomic orbital electron populations 1.22141 0.94949 1.02570 1.02319 1.22722 0.94305 0.96464 0.84855 0.90311 1.23192 0.97767 0.99748 0.98129 1.23238 0.98847 1.01481 0.95089 1.23249 0.92500 0.89768 0.93372 0.90607 1.21222 0.94401 1.01378 0.80945 1.44952 1.09134 1.78000 1.08540 1.16035 0.85113 0.78233 0.80829 1.90861 1.14258 1.60309 1.83289 1.45122 1.10816 1.74198 1.07106 1.20835 0.89735 0.99622 0.83923 1.19039 0.97653 0.88082 0.92451 1.20332 0.94954 1.09982 1.28440 0.92255 1.24978 0.94931 0.97391 0.95707 1.69974 1.09555 1.32311 1.39203 0.86636 0.80786 0.81737 0.79128 1.20679 1.21194 1.19847 1.23015 0.98433 1.00167 1.03192 1.22487 0.93913 1.04541 0.97650 1.88532 1.70390 1.40025 1.29806 0.91704 0.91768 0.92218 0.90381 0.89994 0.89769 0.89576 0.91318 0.90774 0.76981 0.77092 0.91269 0.94798 0.92884 0.91662 0.90428 0.89844 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.44 37.16 0.35 -0.90 16 2 C 0.07 0.66 4.16 -26.01 -0.11 0.55 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -1.00 6.54 -24.79 -0.16 -1.17 16 5 C -0.15 -1.11 6.57 -24.48 -0.16 -1.27 16 6 C 0.07 0.69 3.49 -25.70 -0.09 0.60 16 7 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 8 C 0.15 1.91 5.39 -4.04 -0.02 1.89 16 9 N -0.75 -11.65 5.52 -65.22 -0.36 -12.01 16 10 C 0.70 14.18 8.57 -86.92 -0.74 13.43 16 11 O -0.61 -14.61 16.34 5.28 0.09 -14.53 16 12 N -0.72 -14.84 5.48 -65.22 -0.36 -15.19 16 13 C 0.18 4.33 5.50 -4.04 -0.02 4.30 16 14 C 0.03 0.69 1.38 -155.66 -0.21 0.47 16 15 C -0.50 -13.12 8.63 -34.44 -0.30 -13.42 16 16 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 17 C 0.07 2.00 5.39 -17.82 -0.10 1.91 16 18 N -0.87 -24.75 12.91 55.43 0.72 -24.04 16 19 Si 0.89 20.97 29.55 -169.99 -5.02 15.95 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.21 -4.46 9.96 -26.70 -0.27 -4.73 16 24 C -0.15 -3.44 9.42 -26.70 -0.25 -3.69 16 25 O -0.37 -4.37 10.65 -35.23 -0.38 -4.75 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.64 8.06 -51.93 -0.42 0.23 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.40 5.37 8.49 -40.82 -0.35 5.03 16 36 H 0.40 7.44 8.38 -40.82 -0.34 7.10 16 37 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 38 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.26 7.12 8.32 -40.82 -0.34 6.78 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 357.19 15.07 5.38 5.38 Total: -1.00 -31.63 357.19 -9.41 -41.04 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.40 Total: 10.16 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -2.08 Total: -2.02 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.00 Total: -51.24 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.29 Total: -19.28 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.63 -9.41 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458734006.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.224 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds