Wall clock time and date at job start Tue Mar 31 2020 06:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46557 * 2 1 4 4 N 1.46496 * 109.47360 * 120.00289 * 2 1 3 5 5 C 1.46497 * 120.00166 * 123.63408 * 4 2 1 6 6 C 1.50703 * 109.47221 * 273.51886 * 5 4 2 7 7 H 1.08003 * 119.99373 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00099 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00133 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99918 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47241 * 90.00021 * 10 8 6 12 12 H 1.48504 * 109.47013 * 209.99614 * 10 8 6 13 13 H 1.48500 * 109.47552 * 329.99721 * 10 8 6 14 14 C 1.34779 * 119.99654 * 303.63356 * 4 2 1 15 15 O 1.21286 * 120.00339 * 356.28381 * 14 4 2 16 16 C 1.50703 * 119.99894 * 176.01201 * 14 4 2 17 17 H 1.08999 * 109.66663 * 319.90823 * 16 14 4 18 18 C 1.53066 * 109.67492 * 80.43788 * 16 14 4 19 19 C 1.50178 * 109.89515 * 168.61760 * 18 16 14 20 20 O 1.21275 * 118.24341 * 162.45857 * 19 18 16 21 21 N 1.33356 * 123.50822 * 342.45931 * 19 18 16 22 22 C 1.45755 * 124.10756 * 2.17502 * 21 19 18 23 23 H 1.08999 * 109.30152 * 220.63295 * 22 21 19 24 24 C 1.53007 * 109.29663 * 101.25962 * 22 21 19 25 25 C 1.52916 * 110.48934 * 340.95155 * 22 21 19 26 26 H 1.08991 * 109.47452 * 305.82092 * 1 2 3 27 27 H 1.09002 * 109.47234 * 65.82569 * 1 2 3 28 28 H 1.09007 * 109.46869 * 185.82077 * 1 2 3 29 29 H 1.08998 * 109.47272 * 240.00433 * 2 1 3 30 30 H 1.09008 * 109.46799 * 182.98483 * 3 2 1 31 31 H 1.08995 * 109.47619 * 302.98778 * 3 2 1 32 32 H 1.08996 * 109.47107 * 62.99410 * 3 2 1 33 33 H 1.08998 * 109.47304 * 33.51977 * 5 4 2 34 34 H 1.09004 * 109.46960 * 153.51934 * 5 4 2 35 35 H 0.97001 * 119.99971 * 179.97438 * 9 8 6 36 36 H 1.08993 * 109.40506 * 288.76248 * 18 16 14 37 37 H 1.09004 * 109.39811 * 48.50912 * 18 16 14 38 38 H 0.97003 * 117.94491 * 182.19735 * 21 19 18 39 39 H 1.08999 * 109.47403 * 298.96388 * 24 22 21 40 40 H 1.09003 * 109.47050 * 58.96585 * 24 22 21 41 41 H 1.08997 * 109.46883 * 178.96401 * 24 22 21 42 42 H 1.08999 * 109.60180 * 290.99426 * 25 22 21 43 43 H 1.08998 * 109.74176 * 170.58895 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.9251 -1.8336 1.0631 6 6 2.1204 -3.0944 0.8788 7 1 1.0415 -3.0488 0.8628 8 6 2.7616 -4.3059 0.7306 9 7 2.0593 -5.4063 0.5703 10 14 4.6277 -4.3847 0.7590 11 1 5.0933 -4.5906 2.1541 12 1 5.0884 -5.5139 -0.0883 13 1 5.1850 -3.1123 0.2339 14 6 1.6335 -0.2745 2.4189 15 8 0.9375 0.7123 2.5324 16 6 2.0629 -1.0387 3.6447 17 1 2.0126 -2.1093 3.4458 18 6 3.4953 -0.6501 4.0188 19 6 3.8314 -1.1870 5.3805 20 8 5.0000 -1.2571 5.6973 21 7 2.9137 -1.5906 6.2598 22 6 1.4802 -1.6051 5.9966 23 1 0.9475 -1.2636 6.8840 24 6 1.0411 -3.0332 5.6667 25 6 1.1427 -0.6882 4.8203 26 1 -0.3634 0.6014 0.8332 27 1 -0.3634 0.4208 -0.9376 28 1 -0.3633 -1.0224 0.1042 29 1 1.8934 -0.5138 -0.8900 30 1 3.1286 1.4431 -0.0535 31 1 1.6335 1.9716 -0.8619 32 1 1.7210 1.9406 0.9156 33 1 3.5718 -1.6856 0.1983 34 1 3.5350 -1.9200 1.9624 35 1 2.5105 -6.2586 0.4657 36 1 4.1864 -1.0650 3.2851 37 1 3.5857 0.4361 4.0257 38 1 3.2194 -1.8933 7.1292 39 1 1.5639 -3.3772 4.7743 40 1 1.2804 -3.6894 6.5036 41 1 -0.0339 -3.0505 5.4874 42 1 1.2993 0.3509 5.1099 43 1 0.1030 -0.8333 4.5268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543552926.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:59 Heat of formation + Delta-G solvation = -84.008035 kcal Electronic energy + Delta-G solvation = -24205.452312 eV Core-core repulsion = 20864.142241 eV Total energy + Delta-G solvation = -3341.310071 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64535 -39.21859 -36.75786 -35.49291 -33.74247 -32.66031 -31.35443 -30.77186 -27.68214 -27.00709 -26.69391 -24.64961 -22.49963 -22.39560 -21.22854 -18.67292 -18.30188 -17.10673 -16.89316 -16.36728 -16.16788 -15.46635 -14.99660 -14.57058 -14.27422 -14.00010 -13.79244 -13.52498 -13.39600 -13.08360 -12.71158 -12.58696 -12.41649 -12.13386 -11.97573 -11.77231 -11.53748 -11.42267 -11.24166 -10.98912 -10.87836 -10.76594 -10.65660 -10.56272 -10.35374 -10.27025 -9.81900 -9.62751 -9.02196 -8.83923 -8.74358 -7.79799 -6.26651 -4.28701 2.78525 3.16727 3.18100 3.23751 3.27654 3.39448 3.70572 4.23300 4.62311 4.76762 4.84630 4.97518 5.04320 5.20770 5.32384 5.41281 5.48249 5.61064 5.62602 5.77367 5.81543 5.82739 5.93676 5.97358 6.03611 6.10791 6.14232 6.25930 6.28899 6.39830 6.48276 6.53595 6.60761 6.67736 6.81694 6.87942 7.33640 7.41265 7.43672 8.07452 8.34014 8.36887 8.76866 8.86083 9.33090 10.85443 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011207 B = 0.008934 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.857497 B = 3133.167344 C = 4381.316395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 C -0.166 4.166 4 N -0.583 5.583 5 C 0.201 3.799 6 C -0.541 4.541 7 H 0.080 0.920 8 C 0.079 3.921 9 N -0.888 5.888 10 Si 0.863 3.137 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.263 1.263 14 C 0.528 3.472 15 O -0.562 6.562 16 C -0.116 4.116 17 H 0.122 0.878 18 C -0.127 4.127 19 C 0.529 3.471 20 O -0.562 6.562 21 N -0.714 5.714 22 C 0.137 3.863 23 H 0.086 0.914 24 C -0.174 4.174 25 C -0.107 4.107 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.267 0.733 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.396 0.604 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 8.140 6.548 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.045 3.955 3 C -0.224 4.224 4 N -0.313 5.313 5 C 0.080 3.920 6 C -0.579 4.579 7 H 0.098 0.902 8 C -0.125 4.125 9 N -0.526 5.526 10 Si 0.689 3.311 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.188 1.188 14 C 0.316 3.684 15 O -0.443 6.443 16 C -0.138 4.138 17 H 0.140 0.860 18 C -0.167 4.167 19 C 0.317 3.683 20 O -0.442 6.442 21 N -0.366 5.366 22 C 0.033 3.967 23 H 0.104 0.896 24 C -0.232 4.232 25 C -0.145 4.145 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.231 0.769 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.558 8.478 6.467 10.776 hybrid contribution 1.050 -0.669 0.135 1.253 sum -0.508 7.809 6.602 10.238 Atomic orbital electron populations 1.22146 0.95335 1.02756 1.01934 1.20857 0.94489 0.92155 0.88028 1.22208 1.00472 0.96881 1.02865 1.48030 1.47033 1.31604 1.04622 1.19984 0.89696 0.84761 0.97529 1.21347 0.95508 0.89498 1.51572 0.90210 1.24849 0.97921 0.95532 0.94169 1.69880 1.35732 0.98584 1.48365 0.87045 0.86331 0.78624 0.79078 1.19616 1.20778 1.18763 1.20120 0.79803 0.84062 0.84450 1.90548 1.39747 1.27189 1.86777 1.21522 0.94526 1.03942 0.93778 0.86023 1.21687 0.97393 1.03169 0.94448 1.20048 0.85030 0.76544 0.86705 1.90734 1.18868 1.56085 1.78470 1.45564 1.07060 1.66322 1.17639 1.21013 0.80281 0.96588 0.98867 0.89644 1.22368 1.02389 0.95515 1.02947 1.21695 1.00689 0.99433 0.92727 0.90847 0.92932 0.92201 0.89725 0.93275 0.92525 0.90757 0.94857 0.94932 0.92332 0.87319 0.88109 0.76887 0.90847 0.92451 0.91091 0.90488 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 8.96 37.16 0.33 -2.43 16 2 C 0.15 2.58 3.27 -67.93 -0.22 2.35 16 3 C -0.17 -2.53 9.21 37.16 0.34 -2.18 16 4 N -0.58 -11.13 2.41 -167.47 -0.40 -11.54 16 5 C 0.20 4.25 3.79 -5.19 -0.02 4.23 16 6 C -0.54 -13.55 9.52 -34.44 -0.33 -13.88 16 7 H 0.08 2.23 8.06 -52.48 -0.42 1.80 16 8 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.89 -25.04 13.96 55.43 0.77 -24.27 16 10 Si 0.86 19.70 27.47 -169.99 -4.67 15.03 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 14 C 0.53 9.65 6.24 -10.98 -0.07 9.58 16 15 O -0.56 -10.77 12.46 5.55 0.07 -10.70 16 16 C -0.12 -1.89 1.67 -91.56 -0.15 -2.04 16 17 H 0.12 2.22 5.23 -51.93 -0.27 1.95 16 18 C -0.13 -2.01 5.12 -28.10 -0.14 -2.15 16 19 C 0.53 8.57 7.71 -11.87 -0.09 8.48 16 20 O -0.56 -11.03 17.78 5.56 0.10 -10.93 16 21 N -0.71 -9.18 5.03 -54.85 -0.28 -9.46 16 22 C 0.14 1.55 3.82 -68.37 -0.26 1.29 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 24 C -0.17 -2.09 9.31 37.16 0.35 -1.75 16 25 C -0.11 -1.43 4.10 -26.59 -0.11 -1.53 16 26 H 0.07 1.30 6.23 -51.93 -0.32 0.98 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.48 7.87 -51.93 -0.41 1.07 16 30 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.23 6.24 -51.93 -0.32 0.91 16 33 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 34 H 0.03 0.67 3.96 -51.93 -0.21 0.47 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.11 1.83 6.08 -51.93 -0.32 1.51 16 37 H 0.10 1.48 8.09 -51.93 -0.42 1.06 16 38 H 0.40 4.45 8.80 -40.82 -0.36 4.09 16 39 H 0.07 1.11 6.51 -51.93 -0.34 0.77 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 43 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -29.97 333.75 -6.58 -36.55 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.73 Total: 8.34 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.47 Total: 1.96 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.09 Total: -45.26 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.64 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.67 Total: 15.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.97 -6.58 -36.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543552926.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.460 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds