Wall clock time and date at job start Tue Mar 31 2020 06:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47003 * 2 1 4 4 N 1.46502 * 109.46909 * 119.99361 * 2 1 3 5 5 C 1.46494 * 119.99917 * 119.86907 * 4 2 1 6 6 C 1.50704 * 109.47352 * 273.70601 * 5 4 2 7 7 H 1.07995 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00065 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00582 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47005 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47354 * 120.00305 * 10 8 6 13 13 H 1.48497 * 109.47353 * 240.00536 * 10 8 6 14 14 C 1.34777 * 120.00083 * 299.86662 * 4 2 1 15 15 O 1.21284 * 120.00242 * 4.46203 * 14 4 2 16 16 C 1.50703 * 120.00128 * 184.45466 * 14 4 2 17 17 H 1.08999 * 109.69874 * 31.39714 * 16 14 4 18 18 C 1.53378 * 109.91284 * 270.84893 * 16 14 4 19 19 C 1.50182 * 109.98616 * 191.47144 * 18 16 14 20 20 O 1.21279 * 118.24179 * 197.56683 * 19 18 16 21 21 N 1.33346 * 123.51167 * 17.54704 * 19 18 16 22 22 C 1.45755 * 124.10448 * 357.75400 * 21 19 18 23 23 H 1.08998 * 109.30113 * 258.78151 * 22 21 19 24 24 C 1.53001 * 109.30236 * 139.41164 * 22 21 19 25 25 C 1.52920 * 110.49127 * 19.09821 * 22 21 19 26 26 H 1.08997 * 109.47527 * 306.89138 * 1 2 3 27 27 H 1.08997 * 109.47107 * 66.89164 * 1 2 3 28 28 H 1.09001 * 109.47073 * 186.88859 * 1 2 3 29 29 H 1.08995 * 109.47473 * 239.99410 * 2 1 3 30 30 H 1.09003 * 109.47257 * 182.51995 * 3 2 1 31 31 H 1.08999 * 109.46930 * 302.51580 * 3 2 1 32 32 H 1.08998 * 109.47746 * 62.51844 * 3 2 1 33 33 H 1.09001 * 109.47247 * 33.70703 * 5 4 2 34 34 H 1.09003 * 109.47673 * 153.70991 * 5 4 2 35 35 H 0.96996 * 120.00623 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.38027 * 71.29475 * 18 16 14 37 37 H 1.08999 * 109.24980 * 311.56528 * 18 16 14 38 38 H 0.96999 * 117.94876 * 177.77886 * 21 19 18 39 39 H 1.09008 * 109.46950 * 298.96313 * 24 22 21 40 40 H 1.08996 * 109.47181 * 58.95755 * 24 22 21 41 41 H 1.08991 * 109.47671 * 178.96522 * 24 22 21 42 42 H 1.09000 * 109.60447 * 69.00065 * 25 22 21 43 43 H 1.08998 * 109.60643 * 189.32901 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8581 -1.8833 1.0620 6 6 1.9820 -3.1019 0.9264 7 1 0.9071 -2.9982 0.9386 8 6 2.5527 -4.3491 0.7858 9 7 3.8616 -4.4754 0.7704 10 14 1.4666 -5.8595 0.6170 11 1 0.0397 -5.4509 0.6636 12 1 1.7474 -6.5288 -0.6785 13 1 1.7493 -6.7995 1.7313 14 6 1.6949 -0.2283 2.4203 15 8 0.9345 0.7098 2.5330 16 6 2.2780 -0.8773 3.6491 17 1 3.2726 -1.2625 3.4243 18 6 1.3741 -2.0269 4.1116 19 6 1.7924 -2.4913 5.4772 20 8 1.4121 -3.5793 5.8548 21 7 2.5598 -1.7717 6.2965 22 6 3.1254 -0.4724 5.9556 23 1 4.1731 -0.5962 5.6815 24 6 3.0309 0.4545 7.1692 25 6 2.3666 0.1509 4.7833 26 1 -0.3634 0.6169 0.8219 27 1 -0.3633 0.4033 -0.9452 28 1 -0.3633 -1.0203 0.1233 29 1 1.8934 -0.5139 -0.8899 30 1 3.1291 1.4429 -0.0452 31 1 1.6403 1.9692 -0.8666 32 1 1.7140 1.9432 0.9117 33 1 3.4866 -1.7873 0.1766 34 1 3.4883 -1.9854 1.9456 35 1 4.2631 -5.3529 0.6719 36 1 1.4534 -2.8551 3.4074 37 1 0.3414 -1.6799 4.1477 38 1 2.7540 -2.1359 7.1743 39 1 1.9844 0.5897 7.4425 40 1 3.5710 0.0129 8.0066 41 1 3.4699 1.4213 6.9231 42 1 1.3627 0.4290 5.1040 43 1 2.8973 1.0364 4.4335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543552927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:03 Heat of formation + Delta-G solvation = -90.080564 kcal Electronic energy + Delta-G solvation = -23978.579927 eV Core-core repulsion = 20637.006531 eV Total energy + Delta-G solvation = -3341.573396 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.42265 -39.09232 -36.60330 -35.38846 -33.71297 -32.63442 -31.16040 -30.89568 -27.18112 -26.87920 -26.63421 -24.37846 -22.85158 -22.17199 -21.17156 -18.96518 -18.00772 -17.01981 -16.62823 -16.12746 -15.94229 -15.48267 -14.90898 -14.42151 -14.35148 -14.07001 -13.74323 -13.33683 -13.04671 -12.90184 -12.72792 -12.55910 -12.30603 -12.10497 -11.84947 -11.55282 -11.51306 -11.32484 -11.31616 -10.94919 -10.91936 -10.74245 -10.65995 -10.52409 -10.33338 -10.05085 -9.68383 -9.62449 -8.90877 -8.75269 -8.52707 -7.74317 -6.20037 -4.27096 2.99265 3.25218 3.27083 3.35293 3.38827 3.50537 3.80863 4.34455 4.71753 4.77611 4.88511 5.13351 5.15764 5.27514 5.31072 5.40971 5.50037 5.61732 5.67407 5.74233 5.76082 5.88335 5.94297 6.04593 6.06914 6.09005 6.19693 6.32833 6.39134 6.43149 6.53601 6.71017 6.78998 6.84547 7.01124 7.15905 7.54811 7.58138 7.75261 8.02509 8.32789 8.52302 8.77833 8.97794 9.41553 10.86439 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.008154 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.805132 B = 3433.028040 C = 5088.204582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.148 3.852 3 C -0.165 4.165 4 N -0.588 5.588 5 C 0.233 3.767 6 C -0.537 4.537 7 H 0.063 0.937 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.892 3.108 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.280 1.280 14 C 0.525 3.475 15 O -0.567 6.567 16 C -0.107 4.107 17 H 0.103 0.897 18 C -0.125 4.125 19 C 0.529 3.471 20 O -0.559 6.559 21 N -0.720 5.720 22 C 0.137 3.863 23 H 0.075 0.925 24 C -0.162 4.162 25 C -0.111 4.111 26 H 0.072 0.928 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.265 0.735 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.394 0.606 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.435 10.461 6.183 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.044 3.956 3 C -0.223 4.223 4 N -0.318 5.318 5 C 0.114 3.886 6 C -0.575 4.575 7 H 0.081 0.919 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.206 1.206 14 C 0.313 3.687 15 O -0.448 6.448 16 C -0.128 4.128 17 H 0.121 0.879 18 C -0.165 4.165 19 C 0.317 3.683 20 O -0.437 6.437 21 N -0.373 5.373 22 C 0.032 3.968 23 H 0.093 0.907 24 C -0.220 4.220 25 C -0.149 4.149 26 H 0.091 0.909 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.114 0.886 38 H 0.229 0.771 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.042 10.322 6.134 12.007 hybrid contribution -0.218 -1.175 0.072 1.197 sum -0.260 9.147 6.206 11.057 Atomic orbital electron populations 1.22165 0.95619 1.02649 1.01679 1.20827 0.94284 0.92160 0.88309 1.22181 1.00499 0.96947 1.02694 1.48352 1.50329 1.28873 1.04206 1.19547 0.89959 0.80725 0.98407 1.21486 0.93628 0.91021 1.51394 0.91851 1.24916 0.94999 0.99052 0.94585 1.69910 1.09295 1.24328 1.49184 0.86524 0.80943 0.82841 0.77798 1.19518 1.20909 1.20617 1.20106 0.81033 0.83002 0.84566 1.90539 1.37008 1.30353 1.86949 1.21425 1.01826 0.95946 0.93647 0.87872 1.21726 1.00206 1.00611 0.93975 1.20225 0.76994 0.84011 0.87039 1.90732 1.55533 1.21451 1.75980 1.45642 1.52337 1.20525 1.18766 1.20970 0.97619 0.82778 0.95454 0.90725 1.22149 1.02821 0.99693 0.97315 1.21776 1.01942 0.97922 0.93264 0.90858 0.93206 0.92388 0.89839 0.93224 0.92611 0.90917 0.94806 0.94155 0.92536 0.84990 0.88575 0.77139 0.91895 0.92183 0.90947 0.90189 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.00 37.16 0.33 -2.47 16 2 C 0.15 2.63 3.28 -67.93 -0.22 2.40 16 3 C -0.17 -2.55 9.15 37.16 0.34 -2.21 16 4 N -0.59 -11.54 2.41 -167.47 -0.40 -11.94 16 5 C 0.23 5.24 5.05 -5.19 -0.03 5.21 16 6 C -0.54 -13.41 7.88 -34.44 -0.27 -13.68 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -24.15 13.29 55.43 0.74 -23.41 16 10 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 14 C 0.53 9.88 6.15 -10.98 -0.07 9.81 16 15 O -0.57 -11.21 12.61 5.55 0.07 -11.14 16 16 C -0.11 -1.79 1.91 -91.40 -0.17 -1.97 16 17 H 0.10 1.80 5.99 -51.93 -0.31 1.49 16 18 C -0.13 -2.28 5.36 -27.94 -0.15 -2.43 16 19 C 0.53 9.48 7.72 -11.87 -0.09 9.39 16 20 O -0.56 -12.16 17.78 5.56 0.10 -12.06 16 21 N -0.72 -9.84 5.12 -54.85 -0.28 -10.12 16 22 C 0.14 1.54 3.67 -68.37 -0.25 1.28 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 C -0.16 -1.36 9.40 37.16 0.35 -1.01 16 25 C -0.11 -1.47 4.04 -26.60 -0.11 -1.57 16 26 H 0.07 1.34 6.27 -51.93 -0.33 1.01 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.50 7.84 -51.93 -0.41 1.09 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.22 6.25 -51.93 -0.32 0.90 16 33 H 0.03 0.81 8.00 -51.93 -0.42 0.39 16 34 H 0.04 0.93 5.62 -51.93 -0.29 0.64 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 36 H 0.13 2.83 6.56 -51.93 -0.34 2.49 16 37 H 0.10 1.71 8.10 -51.93 -0.42 1.29 16 38 H 0.39 4.77 8.66 -40.82 -0.35 4.42 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.11 8.07 -51.93 -0.42 0.69 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -29.56 340.89 -7.06 -36.61 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.96 Total: 6.62 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -0.44 Total: 4.44 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.05 Total: -45.47 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.17 Total: -23.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.56 -7.06 -36.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543552927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.467 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds