Wall clock time and date at job start Tue Mar 31 2020 06:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50707 * 109.46892 * 2 1 4 4 O 1.21273 * 119.99863 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99717 * 180.02562 * 3 2 1 6 6 C 1.43521 * 119.01092 * 180.02562 * 5 3 2 7 7 C 1.53800 * 107.93423 * 273.72044 * 6 5 3 8 8 C 1.47144 * 111.77574 * 281.56181 * 7 6 5 9 9 N 1.48205 * 110.34272 * 58.33108 * 8 7 6 10 10 C 1.34780 * 119.97247 * 102.46270 * 9 8 7 11 11 O 1.21278 * 119.99798 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00096 * 179.97438 * 10 9 8 13 13 C 1.53005 * 109.47166 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47450 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00003 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00088 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00053 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47004 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47039 * 119.99745 * 18 16 14 21 21 H 1.48505 * 109.47076 * 239.99769 * 18 16 14 22 22 C 1.43624 * 120.06023 * 282.48235 * 9 8 7 23 23 C 1.48854 * 118.94140 * 359.97438 * 5 3 2 24 24 H 1.09006 * 109.47130 * 299.99354 * 1 2 3 25 25 H 1.08997 * 109.47796 * 59.99626 * 1 2 3 26 26 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47130 * 240.00646 * 2 1 3 28 28 H 1.08997 * 109.47796 * 120.00374 * 2 1 3 29 29 H 1.08996 * 109.84040 * 154.07536 * 6 5 3 30 30 H 1.08999 * 109.71890 * 33.28902 * 6 5 3 31 31 H 1.09002 * 109.00960 * 160.99168 * 7 6 5 32 32 H 1.09002 * 109.00466 * 42.12516 * 7 6 5 33 33 H 1.08996 * 109.32175 * 178.60022 * 8 7 6 34 34 H 1.08999 * 109.32157 * 298.06426 * 8 7 6 35 35 H 1.09005 * 109.47409 * 299.99915 * 12 10 9 36 36 H 1.08994 * 109.47147 * 60.00541 * 12 10 9 37 37 H 1.09005 * 109.46510 * 300.00004 * 13 12 10 38 38 H 1.08996 * 109.47178 * 59.99237 * 13 12 10 39 39 H 0.97002 * 120.00297 * 180.02562 * 17 16 14 40 40 H 1.09002 * 108.87474 * 211.45436 * 22 9 8 41 41 H 1.09005 * 108.87368 * 329.99488 * 22 9 8 42 42 H 1.09000 * 109.48102 * 20.64318 * 23 5 3 43 43 H 1.09004 * 109.49239 * 260.61094 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3426 0.0005 5 7 3.3573 1.6672 -0.0005 6 6 3.8123 3.0283 0.0001 7 6 3.8717 3.5085 -1.4599 8 6 5.0719 3.0101 -2.1501 9 7 5.1035 1.5286 -2.1236 10 6 4.7577 0.8280 -3.2218 11 8 4.4212 1.4099 -4.2312 12 6 4.7902 -0.6784 -3.1958 13 6 4.3564 -1.2215 -4.5588 14 6 4.3884 -2.7279 -4.5327 15 1 4.6885 -3.2462 -3.6339 16 6 4.0345 -3.4446 -5.6561 17 7 3.6685 -2.8135 -6.7504 18 14 4.0747 -5.3119 -5.6239 19 1 4.5184 -5.7744 -4.2843 20 1 2.7163 -5.8412 -5.9060 21 1 5.0221 -5.8045 -6.6560 22 6 5.5021 0.8388 -0.9286 23 6 4.3036 0.5181 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 4.8044 3.0866 0.4478 30 1 3.1157 3.6487 0.5639 31 1 3.8802 4.5983 -1.4751 32 1 2.9860 3.1532 -1.9867 33 1 5.0610 3.3523 -3.1849 34 1 5.9609 3.3988 -1.6536 35 1 5.8030 -1.0163 -2.9761 36 1 4.1104 -1.0432 -2.4259 37 1 3.3437 -0.8837 -4.7789 38 1 5.0364 -0.8566 -5.3285 39 1 3.4192 -3.3177 -7.5407 40 1 5.9922 -0.0942 -1.2068 41 1 6.2118 1.4604 -0.3826 42 1 3.7922 -0.3739 -0.3624 43 1 4.6645 0.3441 1.0132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573620588.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:53 Heat of formation + Delta-G solvation = -78.068287 kcal Electronic energy + Delta-G solvation = -23548.438763 eV Core-core repulsion = 20207.386259 eV Total energy + Delta-G solvation = -3341.052505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68083 -39.27260 -36.94840 -34.37450 -34.03103 -33.35301 -32.42796 -30.84911 -28.50583 -27.12025 -25.69081 -24.11574 -23.18363 -22.02923 -20.85292 -19.14331 -18.31247 -17.51372 -16.90954 -16.63316 -15.92716 -15.84957 -15.41187 -14.95065 -14.45911 -14.28492 -14.10796 -13.67448 -13.46126 -13.27403 -12.95183 -12.64026 -12.30818 -12.24227 -12.12618 -11.83249 -11.82113 -11.37988 -11.30444 -11.15916 -11.09399 -10.97942 -10.96842 -10.59726 -10.00636 -9.77411 -9.66953 -9.21616 -9.03774 -8.77845 -8.47086 -8.35189 -5.99041 -4.03992 2.63349 2.87976 3.13627 3.29394 3.30105 3.37729 3.40020 4.39390 4.43894 4.58410 4.73750 4.81189 4.96487 5.04493 5.10438 5.12100 5.22044 5.35035 5.35101 5.36420 5.44181 5.54612 5.59749 5.63368 5.77620 5.83991 5.95572 5.99507 6.12121 6.14083 6.19846 6.24497 6.55986 6.71299 6.82780 7.23526 7.70312 7.72159 7.81764 8.03630 8.18363 8.34224 8.69170 9.04677 9.59992 11.11915 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.005003 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.932789 B = 5595.012717 C = 6444.369817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.148 4.148 3 C 0.511 3.489 4 O -0.543 6.543 5 N -0.607 5.607 6 C 0.122 3.878 7 C -0.156 4.156 8 C 0.117 3.883 9 N -0.616 5.616 10 C 0.510 3.490 11 O -0.529 6.529 12 C -0.127 4.127 13 C 0.036 3.964 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.059 3.941 17 N -0.889 5.889 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.100 3.900 23 C 0.083 3.917 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.261 0.739 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 8.062 18.210 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.187 4.187 3 C 0.300 3.700 4 O -0.420 6.420 5 N -0.340 5.340 6 C -0.001 4.001 7 C -0.196 4.196 8 C -0.005 4.005 9 N -0.351 5.351 10 C 0.300 3.700 11 O -0.403 6.403 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.143 4.143 17 N -0.527 5.527 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.026 4.026 23 C -0.041 4.041 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.516 8.853 17.451 19.729 hybrid contribution 0.138 -1.075 0.005 1.084 sum 2.654 7.778 17.456 19.294 Atomic orbital electron populations 1.21514 0.93074 1.01690 1.03029 1.21713 0.98732 0.93886 1.04410 1.20871 0.81820 0.92028 0.75240 1.90668 1.54920 1.46759 1.49655 1.47754 1.05986 1.06628 1.73649 1.21007 1.00017 0.82681 0.96428 1.21514 1.00251 1.01070 0.96728 1.20588 0.97274 0.80069 1.02602 1.47748 1.69276 1.06073 1.12038 1.21634 0.75057 0.91411 0.81852 1.90666 1.45808 1.71968 1.31894 1.21901 1.02312 0.88162 1.04327 1.18909 0.97617 0.94767 0.88810 1.21219 1.45815 0.91420 0.98032 0.92570 1.25023 0.95289 0.98443 0.95569 1.70006 1.45044 1.35318 1.02346 0.86555 0.77670 0.85846 0.78000 1.19733 1.21005 1.21017 1.21533 0.95347 0.99266 0.86461 1.23129 0.91663 0.89185 1.00144 0.92370 0.91950 0.91949 0.88335 0.89101 0.90706 0.90034 0.90441 0.90973 0.89266 0.91571 0.90203 0.90608 0.95908 0.95857 0.92965 0.88684 0.90635 0.89049 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.20 37.16 0.34 -1.24 16 2 C -0.15 -1.68 4.80 -27.88 -0.13 -1.81 16 3 C 0.51 7.02 7.38 -10.98 -0.08 6.94 16 4 O -0.54 -9.30 15.49 5.56 0.09 -9.21 16 5 N -0.61 -6.87 2.50 -172.36 -0.43 -7.31 16 6 C 0.12 1.28 5.34 -5.20 -0.03 1.25 16 7 C -0.16 -1.87 5.64 -29.13 -0.16 -2.03 16 8 C 0.12 1.43 5.69 -5.92 -0.03 1.40 16 9 N -0.62 -8.45 2.46 -176.62 -0.43 -8.88 16 10 C 0.51 9.64 7.67 -10.99 -0.08 9.56 16 11 O -0.53 -12.50 15.42 5.56 0.09 -12.41 16 12 C -0.13 -2.46 4.19 -27.88 -0.12 -2.57 16 13 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 14 C -0.53 -14.49 9.11 -34.44 -0.31 -14.80 16 15 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.10 0.94 5.05 -4.54 -0.02 0.92 16 23 C 0.08 0.72 6.51 -1.72 -0.01 0.71 16 24 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 25 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 1.18 7.40 -51.93 -0.38 0.79 16 28 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 29 H 0.07 0.58 7.58 -51.93 -0.39 0.19 16 30 H 0.08 0.92 7.41 -51.93 -0.38 0.54 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 33 H 0.09 1.31 7.12 -51.93 -0.37 0.94 16 34 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 35 H 0.08 1.38 7.37 -51.93 -0.38 1.00 16 36 H 0.08 1.30 7.32 -51.93 -0.38 0.92 16 37 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.10 0.85 6.38 -51.93 -0.33 0.52 16 41 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 42 H 0.09 0.82 5.27 -51.93 -0.27 0.55 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -36.07 340.78 -7.75 -43.82 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.04 Total: -1.65 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.86 Total: 0.72 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.13 Total: -42.59 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.17 Total: -21.63 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.07 -7.75 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573620588.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.250 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds