Wall clock time and date at job start Tue Mar 31 2020 07:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.70417 * 2 1 4 4 C 1.53343 * 109.66878 * 239.48731 * 2 1 3 5 5 C 1.52922 * 108.68681 * 172.74834 * 4 2 1 6 6 N 1.45754 * 110.48632 * 50.73717 * 5 4 2 7 7 C 1.33354 * 124.10873 * 340.92539 * 6 5 4 8 8 O 1.21274 * 118.24697 * 182.22325 * 7 6 5 9 9 C 1.50175 * 123.51046 * 2.24483 * 7 6 5 10 10 H 1.09000 * 109.40352 * 102.43586 * 9 7 6 11 11 N 1.46496 * 109.40530 * 222.26862 * 9 7 6 12 12 C 1.34777 * 119.99867 * 275.00175 * 11 9 7 13 13 O 1.21279 * 120.00166 * 359.97438 * 12 11 9 14 14 C 1.50696 * 120.00137 * 179.97438 * 12 11 9 15 15 C 1.52993 * 109.47432 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47481 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.46997 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.46573 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00167 * 359.72054 * 18 17 16 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47487 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47233 * 120.00158 * 22 20 18 25 25 H 1.48508 * 109.46883 * 239.99963 * 22 20 18 26 26 H 1.09001 * 109.46428 * 299.48249 * 1 2 3 27 27 H 1.09001 * 109.46941 * 59.47824 * 1 2 3 28 28 H 1.08993 * 109.46944 * 179.47972 * 1 2 3 29 29 H 1.08998 * 109.60994 * 52.97833 * 4 2 1 30 30 H 1.09002 * 109.71338 * 292.58217 * 4 2 1 31 31 H 1.09001 * 109.29678 * 290.42442 * 5 4 2 32 32 H 1.08998 * 109.29741 * 171.05127 * 5 4 2 33 33 H 0.96999 * 117.94429 * 160.94959 * 6 5 4 34 34 H 0.96999 * 120.00085 * 94.99569 * 11 9 7 35 35 H 1.09004 * 109.47476 * 59.99658 * 14 12 11 36 36 H 1.08996 * 109.47197 * 300.00015 * 14 12 11 37 37 H 1.09000 * 109.46925 * 60.00107 * 15 14 12 38 38 H 1.08996 * 109.47340 * 300.00415 * 15 14 12 39 39 H 1.09000 * 109.46866 * 60.00179 * 16 15 14 40 40 H 1.09001 * 109.46611 * 300.00296 * 16 15 14 41 41 H 1.09000 * 109.47486 * 60.00167 * 17 16 15 42 42 H 1.09001 * 109.47362 * 299.99445 * 17 16 15 43 43 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0461 -0.7331 -1.2440 5 6 3.5642 -0.5643 -1.3176 6 7 4.1794 -0.9202 -0.0451 7 6 3.5211 -0.9793 1.1131 8 8 4.1475 -1.2477 2.1163 9 6 2.0454 -0.7319 1.2416 10 1 1.5257 -1.6850 1.3403 11 7 1.7908 0.0865 2.4297 12 6 1.6677 -0.4988 3.6374 13 8 1.7672 -1.7031 3.7407 14 6 1.4063 0.3431 4.8597 15 6 1.3095 -0.5607 6.0904 16 6 1.0447 0.2942 7.3314 17 6 0.9486 -0.6096 8.5622 18 6 0.6872 0.2324 9.7844 19 1 0.6030 1.3052 9.6932 20 6 0.5607 -0.3665 11.0199 21 7 0.6687 -1.6724 11.1318 22 14 0.2360 0.6771 12.5347 23 1 0.1584 2.1074 12.1432 24 1 -1.0479 0.2629 13.1553 25 1 1.3402 0.4907 13.5102 26 1 -0.3632 0.5058 0.8946 27 1 -0.3633 0.5219 -0.8853 28 1 -0.3633 -1.0276 -0.0093 29 1 1.5871 -0.3074 -2.1363 30 1 1.7988 -1.7925 -1.1755 31 1 3.8002 0.4732 -1.5542 32 1 3.9607 -1.2087 -2.1022 33 1 5.1271 -1.1267 -0.0404 34 1 1.7109 1.0497 2.3471 35 1 0.4695 0.8860 4.7334 36 1 2.2225 1.0531 4.9931 37 1 2.2460 -1.1038 6.2168 38 1 0.4931 -1.2704 5.9567 39 1 0.1083 0.8377 7.2052 40 1 1.8615 1.0036 7.4648 41 1 1.8852 -1.1528 8.6882 42 1 0.1320 -1.3193 8.4290 43 1 0.5801 -2.0936 12.0010 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588731363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:33 Heat of formation + Delta-G solvation = -104.931500 kcal Electronic energy + Delta-G solvation = -22009.269536 eV Core-core repulsion = 18667.052155 eV Total energy + Delta-G solvation = -3342.217381 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04186 -39.08229 -37.21178 -35.37733 -34.70589 -33.02698 -32.50539 -30.02248 -29.31450 -27.77756 -25.50763 -23.90566 -22.32253 -21.95165 -20.26097 -19.92829 -19.65964 -17.67992 -16.87842 -16.68915 -16.50244 -16.07229 -15.34440 -15.14509 -14.68422 -14.39776 -14.33084 -13.88733 -13.74008 -13.53734 -13.22540 -12.69122 -12.55256 -12.23423 -12.06645 -11.84917 -11.60904 -11.54399 -11.39861 -11.25857 -10.94223 -10.44757 -10.43425 -10.34504 -10.32764 -9.70113 -9.53200 -9.39775 -9.15223 -9.07477 -8.90443 -8.25336 -5.89913 -3.92151 2.31749 2.72935 3.04245 3.23565 3.36826 3.43719 3.47941 4.01973 4.11016 4.22265 4.27681 4.53550 4.74885 4.79186 4.85945 4.99854 5.14081 5.21578 5.28479 5.33189 5.39911 5.44896 5.45134 5.48831 5.64675 5.78566 5.95910 6.22442 6.23929 6.40337 6.48549 6.64183 6.93786 6.99845 7.12030 7.27857 7.45693 7.80918 7.97727 7.99791 8.12467 8.38560 8.54099 9.15974 9.71176 11.21534 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.040824 B = 0.002574 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.707180 B =10874.615075 C =11181.950081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.131 4.131 5 C 0.109 3.891 6 N -0.725 5.725 7 C 0.499 3.501 8 O -0.524 6.524 9 C 0.142 3.858 10 H 0.118 0.882 11 N -0.724 5.724 12 C 0.518 3.482 13 O -0.519 6.519 14 C -0.135 4.135 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.054 3.946 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.398 0.602 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 6.157 -32.049 32.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 H 0.102 0.898 4 C -0.169 4.169 5 C -0.015 4.015 6 N -0.380 5.380 7 C 0.283 3.717 8 O -0.398 6.398 9 C 0.033 3.967 10 H 0.136 0.864 11 N -0.379 5.379 12 C 0.306 3.694 13 O -0.392 6.392 14 C -0.175 4.175 15 C -0.141 4.141 16 C -0.147 4.147 17 C -0.018 4.018 18 C -0.557 4.557 19 H 0.073 0.927 20 C -0.147 4.147 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.234 0.766 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.201 5.026 -31.259 31.737 hybrid contribution 0.274 0.901 0.645 1.141 sum 2.475 5.927 -30.614 31.281 Atomic orbital electron populations 1.21824 0.93265 1.02780 1.02548 1.21542 0.97471 1.00022 0.92959 0.89768 1.21950 0.94360 1.02128 0.98465 1.21381 0.93797 1.00885 0.85446 1.45571 1.13392 1.71363 1.07646 1.20769 0.90942 0.76976 0.82964 1.90836 1.67640 1.46216 1.35118 1.20744 0.91529 0.98203 0.86258 0.86428 1.45848 1.75369 1.10272 1.06365 1.21072 0.74967 0.89209 0.84163 1.90709 1.47896 1.15164 1.85448 1.21764 1.03393 0.99432 0.92955 1.21452 1.02851 0.97612 0.92230 1.21645 0.99741 0.98486 0.94850 1.19106 0.97273 0.94658 0.90774 1.21331 1.48370 0.93532 0.92419 0.92717 1.25051 0.95640 0.94899 0.99068 1.69990 1.50641 1.08845 1.24023 0.86558 0.77762 0.80577 0.83218 1.19797 1.21076 1.21082 0.91769 0.91915 0.92083 0.89048 0.90423 0.91612 0.90395 0.76620 0.76411 0.89202 0.89184 0.91716 0.91830 0.93518 0.93514 0.96562 0.96578 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.12 37.16 0.34 -0.39 16 2 C -0.10 -0.53 2.30 -90.41 -0.21 -0.74 16 3 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 4 C -0.13 -0.47 5.31 -26.59 -0.14 -0.61 16 5 C 0.11 0.41 7.17 -4.48 -0.03 0.38 16 6 N -0.73 -5.58 5.45 -61.39 -0.33 -5.92 16 7 C 0.50 5.98 7.44 -11.87 -0.09 5.89 16 8 O -0.52 -9.24 16.58 4.63 0.08 -9.17 16 9 C 0.14 1.40 2.07 -69.30 -0.14 1.26 16 10 H 0.12 1.38 7.52 -51.93 -0.39 0.98 16 11 N -0.72 -7.85 4.70 -55.15 -0.26 -8.11 16 12 C 0.52 7.95 7.26 -10.99 -0.08 7.87 16 13 O -0.52 -10.38 15.22 4.63 0.07 -10.31 16 14 C -0.14 -1.96 5.70 -27.89 -0.16 -2.12 16 15 C -0.10 -1.99 4.50 -26.73 -0.12 -2.11 16 16 C -0.11 -2.37 5.15 -26.73 -0.14 -2.51 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 19 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -28.18 13.29 55.43 0.74 -27.45 16 22 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 26 H 0.06 0.37 7.97 -51.93 -0.41 -0.05 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.33 8.13 -51.93 -0.42 -0.10 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.40 2.88 8.80 -40.82 -0.36 2.52 16 34 H 0.40 3.03 8.59 -40.82 -0.35 2.68 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 38 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -38.80 352.59 -8.13 -46.93 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.39 Total: -1.81 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.32 Total: -6.82 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.14 Total: -41.48 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.15 Total: -19.47 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.80 -8.13 -46.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588731363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.001 kcal (2) G-P(sol) polarization free energy of solvation -38.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds