Wall clock time and date at job start Tue Mar 31 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.67537 * 2 1 4 4 C 1.53348 * 109.67322 * 239.46632 * 2 1 3 5 5 C 1.52915 * 108.67319 * 172.73891 * 4 2 1 6 6 N 1.45745 * 110.49290 * 50.74968 * 5 4 2 7 7 C 1.33356 * 124.10543 * 340.92604 * 6 5 4 8 8 O 1.21287 * 118.24670 * 182.22358 * 7 6 5 9 9 C 1.50169 * 123.50956 * 2.22381 * 7 6 5 10 10 H 1.08999 * 109.33383 * 222.33066 * 9 7 6 11 11 N 1.46496 * 109.40475 * 102.54573 * 9 7 6 12 12 C 1.34777 * 120.00344 * 84.56872 * 11 9 7 13 13 O 1.21281 * 119.99845 * 0.02562 * 12 11 9 14 14 C 1.50696 * 120.00077 * 180.02562 * 12 11 9 15 15 C 1.53005 * 109.47133 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47090 * 179.97438 * 15 14 12 17 17 C 1.53002 * 109.46736 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47153 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 H 1.08999 * 109.47032 * 299.50214 * 1 2 3 27 27 H 1.08998 * 109.47406 * 59.50057 * 1 2 3 28 28 H 1.08997 * 109.47490 * 179.50208 * 1 2 3 29 29 H 1.09004 * 109.59901 * 292.49232 * 4 2 1 30 30 H 1.09002 * 109.60270 * 52.97754 * 4 2 1 31 31 H 1.09006 * 109.30029 * 171.06594 * 5 4 2 32 32 H 1.09008 * 109.29946 * 290.43582 * 5 4 2 33 33 H 0.97000 * 117.95129 * 160.92561 * 6 5 4 34 34 H 0.97004 * 120.00009 * 264.57719 * 11 9 7 35 35 H 1.08994 * 109.47692 * 60.00404 * 14 12 11 36 36 H 1.09001 * 109.47047 * 299.99883 * 14 12 11 37 37 H 1.09007 * 109.47086 * 59.99616 * 15 14 12 38 38 H 1.09001 * 109.46760 * 299.99693 * 15 14 12 39 39 H 1.08999 * 109.46983 * 60.00393 * 16 15 14 40 40 H 1.08993 * 109.47310 * 299.99833 * 16 15 14 41 41 H 1.09004 * 109.47178 * 60.00488 * 17 16 15 42 42 H 1.08993 * 109.47411 * 300.00171 * 17 16 15 43 43 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0462 -0.7336 -1.2437 5 6 3.5642 -0.5643 -1.3171 6 7 4.1794 -0.9198 -0.0446 7 6 3.5209 -0.9789 1.1136 8 8 4.1474 -1.2469 2.1170 9 6 2.0453 -0.7315 1.2419 10 1 1.8572 -0.1216 2.1255 11 7 1.3471 -2.0122 1.3771 12 6 1.2331 -2.5932 2.5879 13 8 1.7083 -2.0555 3.5656 14 6 0.5153 -3.9109 2.7268 15 6 0.5277 -4.3464 4.1935 16 6 -0.2016 -5.6839 4.3346 17 6 -0.1886 -6.1195 5.8012 18 6 -0.9075 -7.4367 5.9404 19 1 -1.3309 -7.9154 5.0698 20 6 -1.0247 -8.0307 7.1791 21 7 -0.5044 -7.4504 8.2385 22 14 -1.9152 -9.6637 7.3515 23 1 -1.8975 -10.0895 8.7741 24 1 -3.3211 -9.5111 6.8979 25 1 -1.2351 -10.6886 6.5196 26 1 -0.3633 0.5061 0.8944 27 1 -0.3634 0.5216 -0.8854 28 1 -0.3634 -1.0276 -0.0089 29 1 1.7994 -1.7929 -1.1722 30 1 1.5871 -0.3081 -2.1361 31 1 3.9611 -1.2087 -2.1017 32 1 3.8000 0.4733 -1.5539 33 1 5.1271 -1.1263 -0.0397 34 1 0.9668 -2.4422 0.5952 35 1 1.0175 -4.6641 2.1197 36 1 -0.5154 -3.8005 2.3897 37 1 0.0253 -3.5931 4.8004 38 1 1.5583 -4.4567 4.5310 39 1 0.3005 -6.4373 3.7277 40 1 -1.2321 -5.5732 3.9973 41 1 -0.6904 -5.3662 6.4085 42 1 0.8420 -6.2303 6.1383 43 1 -0.0418 -6.6026 8.1490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588731364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:37 Heat of formation + Delta-G solvation = -106.747000 kcal Electronic energy + Delta-G solvation = -22172.235648 eV Core-core repulsion = 18829.939541 eV Total energy + Delta-G solvation = -3342.296107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18046 -39.16737 -37.34292 -35.38691 -34.90673 -33.01395 -32.68902 -30.02323 -29.30790 -27.84527 -25.18204 -24.04075 -22.47468 -21.90015 -20.72150 -20.11507 -19.37449 -17.68739 -16.96238 -16.87285 -16.57074 -16.25663 -15.53135 -15.48444 -14.79034 -14.21492 -14.01047 -13.78431 -13.71938 -13.64091 -13.17485 -12.92961 -12.81848 -12.38646 -12.27321 -12.22607 -11.79051 -11.46705 -11.20596 -11.06402 -10.90464 -10.60931 -10.53488 -10.42423 -10.06457 -9.84937 -9.69783 -9.48846 -9.42515 -9.15208 -8.42422 -8.23505 -6.26794 -3.95305 2.17538 2.67191 2.95317 3.24869 3.48076 3.50897 3.69675 3.99504 4.07856 4.11418 4.23359 4.61804 4.68704 4.76372 4.86607 4.92074 5.09617 5.18987 5.20389 5.27078 5.29164 5.34189 5.44546 5.50528 5.59793 5.75211 5.82202 6.08764 6.15781 6.24614 6.43141 6.48176 6.76679 6.93618 6.96079 7.09039 7.32634 7.54894 7.67838 7.95464 8.25383 8.32652 8.56300 8.98496 9.77574 11.14023 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034660 B = 0.002685 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.647002 B =10424.689961 C =10691.070923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.135 4.135 5 C 0.110 3.890 6 N -0.723 5.723 7 C 0.502 3.498 8 O -0.524 6.524 9 C 0.142 3.858 10 H 0.118 0.882 11 N -0.725 5.725 12 C 0.510 3.490 13 O -0.510 6.510 14 C -0.135 4.135 15 C -0.105 4.105 16 C -0.102 4.102 17 C 0.006 3.994 18 C -0.602 4.602 19 H 0.047 0.953 20 C 0.012 3.988 21 N -0.915 5.915 22 Si 1.069 2.931 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.289 1.289 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.398 0.602 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 17.466 -26.834 32.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.110 0.890 4 C -0.173 4.173 5 C -0.015 4.015 6 N -0.378 5.378 7 C 0.285 3.715 8 O -0.398 6.398 9 C 0.033 3.967 10 H 0.136 0.864 11 N -0.382 5.382 12 C 0.297 3.703 13 O -0.383 6.383 14 C -0.175 4.175 15 C -0.143 4.143 16 C -0.140 4.140 17 C -0.031 4.031 18 C -0.640 4.640 19 H 0.066 0.934 20 C -0.192 4.192 21 N -0.551 5.551 22 Si 0.898 3.102 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.236 0.764 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.232 16.607 -24.427 29.839 hybrid contribution 0.741 0.940 -1.804 2.164 sum 4.973 17.547 -26.230 31.948 Atomic orbital electron populations 1.21782 0.93243 1.02683 1.02567 1.21622 0.97568 1.00063 0.93106 0.88956 1.22001 0.94565 1.01760 0.98957 1.21373 0.93741 1.00944 0.85410 1.45556 1.13441 1.71113 1.07654 1.20692 0.90797 0.77109 0.82879 1.90853 1.67704 1.46080 1.35122 1.20859 0.87538 0.87396 1.00862 0.86417 1.45996 1.58865 1.22682 1.10680 1.21169 0.79540 0.87277 0.82342 1.90766 1.46022 1.64137 1.37363 1.21760 1.00905 0.93244 1.01612 1.21474 1.02032 0.98560 0.92227 1.21511 0.98403 0.93810 1.00291 1.19225 0.96417 0.96408 0.91011 1.22085 1.39117 1.06794 0.96027 0.93448 1.25863 0.97006 1.03922 0.92384 1.70760 1.34539 1.18667 1.31151 0.83548 0.75789 0.74897 0.75992 1.20799 1.21516 1.21521 0.91870 0.91887 0.92040 0.90842 0.89121 0.90409 0.91491 0.76614 0.76353 0.89203 0.89037 0.91779 0.91765 0.93348 0.93307 0.97488 0.97475 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.91 37.16 0.33 -0.35 16 2 C -0.10 -0.55 2.58 -90.40 -0.23 -0.78 16 3 H 0.09 0.42 8.13 -51.93 -0.42 0.00 16 4 C -0.14 -0.45 5.28 -26.59 -0.14 -0.59 16 5 C 0.11 0.40 7.17 -4.49 -0.03 0.37 16 6 N -0.72 -5.53 5.45 -61.39 -0.33 -5.87 16 7 C 0.50 5.99 7.24 -11.87 -0.09 5.91 16 8 O -0.52 -9.32 17.36 5.54 0.10 -9.23 16 9 C 0.14 1.40 2.27 -69.30 -0.16 1.24 16 10 H 0.12 1.43 7.58 -51.93 -0.39 1.04 16 11 N -0.73 -7.35 4.20 -55.15 -0.23 -7.58 16 12 C 0.51 7.50 7.78 -10.99 -0.09 7.41 16 13 O -0.51 -10.06 15.22 5.54 0.08 -9.98 16 14 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 15 C -0.10 -1.97 4.50 -26.73 -0.12 -2.09 16 16 C -0.10 -2.20 5.15 -26.73 -0.14 -2.34 16 17 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 18 C -0.60 -17.97 9.11 -34.44 -0.31 -18.28 16 19 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 20 C 0.01 0.35 5.46 -17.82 -0.10 0.26 16 21 N -0.91 -29.43 13.65 55.43 0.76 -28.68 16 22 Si 1.07 26.16 29.90 -169.99 -5.08 21.08 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.29 6.79 -51.93 -0.35 -0.06 16 29 H 0.07 0.27 6.96 -51.93 -0.36 -0.09 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.17 8.14 -51.92 -0.42 -0.25 16 33 H 0.40 2.88 8.80 -40.82 -0.36 2.52 16 34 H 0.40 2.74 6.56 -40.82 -0.27 2.47 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 38 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 42 H 0.01 0.20 8.00 -51.93 -0.42 -0.21 16 43 H 0.27 8.70 7.22 -40.82 -0.29 8.41 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -39.42 347.81 -7.95 -47.38 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.13 Total: -1.15 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.35 Total: -11.22 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.19 Total: -42.12 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.18 Total: -19.20 kcal Atomic # 14 Polarization: 26.16 SS G_CDS: -5.08 Total: 21.08 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -39.42 -7.95 -47.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588731364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.369 kcal (2) G-P(sol) polarization free energy of solvation -39.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds