Wall clock time and date at job start Tue Mar 31 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.05551 * 2 1 4 4 C 1.54268 * 110.02863 * 238.59096 * 2 1 3 5 5 C 1.54897 * 104.19359 * 217.10524 * 4 2 1 6 6 C 1.54882 * 102.74839 * 37.94171 * 5 4 2 7 7 C 1.53876 * 110.03340 * 121.42420 * 2 1 3 8 8 H 1.09002 * 110.03018 * 238.61553 * 7 2 1 9 9 N 1.46495 * 110.03029 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99951 * 205.00251 * 9 7 2 11 11 O 1.21586 * 119.99552 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00021 * 179.97438 * 10 9 7 13 13 C 1.47019 * 125.64831 * 0.02562 * 12 10 9 14 14 C 1.54326 * 107.27052 * 181.02028 * 13 12 10 15 15 C 1.55152 * 102.94142 * 22.19303 * 14 13 12 16 16 O 1.42895 * 111.00730 * 82.60874 * 15 14 13 17 17 C 1.50707 * 111.00373 * 206.42321 * 15 14 13 18 18 H 1.07991 * 120.00028 * 359.97438 * 17 15 14 19 19 C 1.37879 * 119.99731 * 179.97438 * 17 15 14 20 20 N 1.31513 * 120.00454 * 0.02562 * 19 17 15 21 21 Si 1.86799 * 119.99931 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46790 * 60.00381 * 21 19 17 23 23 H 1.48495 * 109.47340 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47376 * 300.00728 * 21 19 17 25 25 C 1.47426 * 125.64714 * 179.71224 * 12 10 9 26 26 H 1.09000 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46934 * 299.95750 * 1 2 3 28 28 H 1.09001 * 109.47021 * 59.95530 * 1 2 3 29 29 H 1.08999 * 110.49069 * 98.43040 * 4 2 1 30 30 H 1.08999 * 110.60474 * 335.83867 * 4 2 1 31 31 H 1.08994 * 110.75328 * 156.26004 * 5 4 2 32 32 H 1.09004 * 110.75215 * 279.62712 * 5 4 2 33 33 H 1.09003 * 110.48391 * 80.73538 * 6 5 4 34 34 H 1.09004 * 110.48801 * 203.38079 * 6 5 4 35 35 H 0.97004 * 120.00317 * 24.99857 * 9 7 2 36 36 H 1.08994 * 109.88287 * 300.43865 * 13 12 10 37 37 H 1.08998 * 109.88437 * 61.60668 * 13 12 10 38 38 H 1.09001 * 110.71998 * 140.55741 * 14 13 12 39 39 H 1.09005 * 110.72430 * 263.65088 * 14 13 12 40 40 H 0.96698 * 114.00586 * 180.02562 * 16 15 14 41 41 H 0.96999 * 120.00604 * 179.97438 * 20 19 17 42 42 H 1.09001 * 110.37000 * 274.74899 * 25 12 10 43 43 H 1.09002 * 110.36348 * 37.06967 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7553 -1.2370 5 6 3.3137 -1.5007 -0.7194 6 6 2.8875 -1.9407 0.7032 7 6 2.0572 -0.7537 1.2336 8 1 2.6861 -0.0953 1.8328 9 7 0.9360 -1.2448 2.0386 10 6 1.1013 -1.4719 3.3568 11 8 2.1812 -1.2696 3.8777 12 7 0.0697 -1.9232 4.0974 13 6 -1.2832 -2.2091 3.5980 14 6 -2.1273 -2.6751 4.8029 15 6 -1.3585 -2.0855 6.0147 16 8 -1.7117 -0.7176 6.2290 17 6 -1.5993 -2.9036 7.2572 18 1 -2.2398 -3.7722 7.2161 19 6 -1.0019 -2.5431 8.4465 20 7 -0.2224 -1.4851 8.4967 21 14 -1.3010 -3.5568 9.9868 22 1 -0.8380 -4.9495 9.7604 23 1 -0.5509 -2.9638 11.1229 24 1 -2.7522 -3.5627 10.3015 25 6 0.1128 -2.2181 5.5412 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5132 0.8904 28 1 -0.3633 0.5145 -0.8896 29 1 2.3297 -0.0534 -2.0256 30 1 1.3152 -1.4657 -1.5991 31 1 3.5325 -2.3677 -1.3426 32 1 4.1710 -0.8290 -0.6754 33 1 2.2771 -2.8427 0.6567 34 1 3.7638 -2.1039 1.3306 35 1 0.0746 -1.4065 1.6229 36 1 -1.7178 -1.3070 3.1676 37 1 -1.2421 -2.9980 2.8470 38 1 -3.1357 -2.2647 4.7492 39 1 -2.1578 -3.7635 4.8546 40 1 -1.2559 -0.3060 6.9759 41 1 0.1976 -1.2313 9.3334 42 1 0.4786 -3.2308 5.7109 43 1 0.7438 -1.4945 6.0575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591954539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:30 Heat of formation + Delta-G solvation = -85.461488 kcal Electronic energy + Delta-G solvation = -23396.297016 eV Core-core repulsion = 20054.923919 eV Total energy + Delta-G solvation = -3341.373098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02697 -38.48671 -36.95423 -34.21136 -33.23300 -32.12277 -31.30764 -30.06176 -27.97751 -27.26290 -25.29686 -24.73270 -22.60983 -20.86188 -19.87744 -19.55464 -19.14038 -17.60221 -17.07308 -15.97524 -15.60197 -15.12241 -15.04619 -14.58392 -14.36939 -14.00008 -13.77424 -13.23648 -13.01742 -12.87580 -12.78857 -12.42390 -12.00548 -11.86148 -11.60308 -11.44784 -11.14036 -11.01522 -10.98825 -10.87308 -10.79398 -10.75349 -10.58658 -10.54361 -10.48031 -10.15974 -9.54685 -9.35859 -8.71038 -8.65368 -8.33631 -7.62660 -6.26634 -4.36408 3.20343 3.25414 3.29208 3.31324 3.80967 4.26916 4.39059 4.52908 4.56154 4.74934 5.00368 5.14682 5.27451 5.34800 5.38477 5.43869 5.49927 5.56620 5.66922 5.67551 5.73798 5.81642 5.82753 5.94439 6.02343 6.06012 6.09491 6.21479 6.22070 6.31316 6.53693 6.73582 6.90742 6.94204 7.02748 7.26966 7.35887 7.71154 7.76933 8.03288 8.60098 8.68573 9.22197 9.33370 9.49212 10.80566 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034793 B = 0.003988 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.557384 B = 7019.719329 C = 7332.254572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 H 0.080 0.920 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.135 4.135 7 C 0.163 3.837 8 H 0.089 0.911 9 N -0.747 5.747 10 C 0.714 3.286 11 O -0.599 6.599 12 N -0.628 5.628 13 C 0.106 3.894 14 C -0.116 4.116 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.539 4.539 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.112 3.888 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.386 0.614 41 H 0.272 0.728 42 H 0.056 0.944 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 0.608 -17.183 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 H 0.098 0.902 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.174 4.174 7 C 0.057 3.943 8 H 0.107 0.893 9 N -0.406 5.406 10 C 0.416 3.584 11 O -0.478 6.478 12 N -0.365 5.365 13 C -0.017 4.017 14 C -0.154 4.154 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.010 4.010 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.231 0.769 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.238 0.762 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.997 0.790 -17.198 17.331 hybrid contribution -0.120 -0.535 1.138 1.263 sum 1.876 0.255 -16.060 16.171 Atomic orbital electron populations 1.21828 0.94968 1.01597 1.02240 1.22018 0.96230 0.99742 0.94306 0.90180 1.22443 0.97513 0.98914 0.96771 1.22462 0.97625 0.99890 0.96250 1.22820 1.00271 0.98503 0.95801 1.21372 0.87365 0.94801 0.90759 0.89321 1.45533 1.14696 1.72848 1.07488 1.15599 0.83603 0.78329 0.80848 1.90867 1.25225 1.59896 1.71787 1.47893 1.09249 1.67875 1.11476 1.21903 0.83742 0.98577 0.97514 1.22596 0.98650 1.00334 0.93860 1.19617 0.87229 0.81160 0.91124 1.86052 1.70952 1.26448 1.55970 1.21469 1.30223 1.12662 0.93394 0.91546 1.25080 0.93660 0.95050 0.99399 1.69561 1.30702 1.25236 1.27846 0.86446 0.78463 0.80232 0.81665 1.20008 1.21064 1.20009 1.23171 1.02021 1.00068 0.75724 0.92544 0.91851 0.92320 0.91657 0.91465 0.91581 0.91379 0.91361 0.91124 0.76870 0.92768 0.93354 0.90818 0.90529 0.76191 0.91814 0.92584 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.73 37.16 0.29 -1.12 16 2 C -0.10 -1.04 3.50 -89.50 -0.31 -1.36 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -1.00 6.36 -25.07 -0.16 -1.16 16 5 C -0.12 -1.14 6.91 -24.74 -0.17 -1.31 16 6 C -0.13 -1.65 6.53 -25.07 -0.16 -1.82 16 7 C 0.16 2.20 3.23 -66.81 -0.22 1.98 16 8 H 0.09 1.39 7.56 -51.93 -0.39 1.00 16 9 N -0.75 -11.63 4.46 -57.58 -0.26 -11.89 16 10 C 0.71 14.90 8.49 -86.92 -0.74 14.16 16 11 O -0.60 -14.80 16.25 5.29 0.09 -14.71 16 12 N -0.63 -13.31 3.32 -176.10 -0.59 -13.90 16 13 C 0.11 1.88 6.15 -3.06 -0.02 1.86 16 14 C -0.12 -2.31 6.12 -24.90 -0.15 -2.47 16 15 C 0.25 6.10 0.89 -89.50 -0.08 6.02 16 16 O -0.58 -15.17 13.19 -35.23 -0.46 -15.63 16 17 C -0.54 -14.07 8.25 -34.44 -0.28 -14.35 16 18 H 0.07 1.68 7.76 -52.49 -0.41 1.27 16 19 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 20 N -0.89 -24.09 10.72 55.43 0.59 -23.49 16 21 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.11 2.76 5.64 -2.41 -0.01 2.75 16 26 H 0.06 0.51 6.84 -51.93 -0.36 0.15 16 27 H 0.06 0.69 7.80 -51.93 -0.40 0.28 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 7.86 -51.93 -0.41 0.14 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.86 8.05 -51.93 -0.42 0.44 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.39 5.28 4.79 -40.82 -0.20 5.08 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.43 8.02 -51.93 -0.42 1.01 16 40 H 0.39 10.42 6.93 45.56 0.32 10.74 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 43 H 0.08 2.23 7.64 -51.93 -0.40 1.84 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -29.94 336.76 -9.12 -39.07 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -6.44 Total: 15.15 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -2.12 Total: 4.96 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.25 Total: -49.28 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.38 Total: -30.35 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.94 -9.12 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591954539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.392 kcal (2) G-P(sol) polarization free energy of solvation -29.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds